Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
LjContig00222g0005017 Lotus japonicus HOM05D005259 ORTHO05D006402 0.0e+00 2087.4 1045 100.0
Glyma.01G234600 Glycine max HOM05D005259 ORTHO05D006402 0.0e+00 1241.9 1070 64.0
Glyma.11G008300 Glycine max HOM05D005259 ORTHO05D006402 0.0e+00 1212.6 1070 62.9
VMungo1215G2763 Vigna mungo HOM05D005259 ORTHO05D006402 0.0e+00 1149.0 1066 59.7
arahy.Tifrunner.gnm1.ann1.SM0BS0 Arachis hypogaea HOM05D005259 ORTHO05D006402 0.0e+00 1085.9 1063 57.8
Phvul.002G042000 Phaseolus vulgaris HOM05D005259 ORTHO05D006402 0.0e+00 1075.5 1027 58.8
Lalb_Chr09g0320051 Lupinus albus HOM05D005259 ORTHO05D006402 7.9e-285 984.2 1076 53.6
Ca_24427_v3 Cicer arietinum L. HOM05D005259 ORTHO05D006402 3.0e-276 955.7 1074 54.1
TPR.G37888 Trifolium pratense HOM05D005259 ORTHO05D006402 2.9e-271 939.1 1101 53.3
Medtr5g007040 Medicago truncatula HOM05D005259 ORTHO05D006402 8.7e-268 927.5 1068 52.6
Psat2g189680 Pisum sativum HOM05D005259 ORTHO05D006402 2.2e-247 859.8 1066 49.6
Cfa008379 Carpinus fangiana HOM05D005259 ORTHO05D006402 1.2e-176 624.8 1103 38.5
Medtr6g046940 Medicago truncatula HOM05D005259 ORTHO05D006402 5.3e-172 609.4 938 44.0
Atru.chr4.2229 Acer truncatum HOM05D005259 ORTHO05D006402 1.1e-166 591.7 1084 37.5
Ciclev10004215m.g Citrus clementina HOM05D005259 ORTHO05D006402 1.4e-161 574.7 1139 37.4
Thecc.04G246200 Theobroma cacao HOM05D005259 ORTHO05D006402 1.2e-160 571.6 1113 37.6
CiPaw.01G190300 Carya illinoinensis HOM05D005259 ORTHO05D001287 4.3e-158 563.1 1104 36.4
Manes.03G168800 Manihot esculenta HOM05D005259 ORTHO05D006402 2.4e-156 557.4 1088 35.9
Prupe.1G030800 Prunus persica HOM05D005259 ORTHO05D006402 1.5e-155 554.7 1084 36.2
TAR362G0225 Trochodendron aralioides HOM05D005259 ORTHO05D006402 3.8e-154 550.1 1171 36.1
Duzib052G0218 Durio zibethinus HOM05D005259 ORTHO05D006402 6.5e-154 549.3 1092 36.7
QL06p015741 Quercus lobata HOM05D005259 ORTHO05D006402 1.9e-153 547.7 1074 37.2
TAR633G1135 Trochodendron aralioides HOM05D005259 ORTHO05D006402 2.5e-153 547.4 1156 34.9
Duzib151G0402 Durio zibethinus HOM05D005259 ORTHO05D006402 1.3e-151 541.6 1115 36.4
Duzib212G1015 Durio zibethinus HOM05D005259 ORTHO05D006402 3.9e-151 540.0 1098 36.6
Glyma.10G185100 Glycine max HOM05D005259 ORTHO05D006402 1.1e-150 538.5 777 47.7
Potri.008G162500 Populus trichocarpa HOM05D005259 ORTHO05D006402 3.1e-148 530.4 1107 35.4
CiPaw.02G116300 Carya illinoinensis HOM05D005259 ORTHO05D006402 9.0e-148 528.9 1060 34.5
COL.COLO4_15792 Corchorus olitorius HOM05D005259 ORTHO05D006402 1.1e-145 521.9 1120 35.8
FAN12G0451 Fragaria x ananassa HOM05D005259 ORTHO05D006402 3.9e-143 513.5 1098 35.1
MD16G1208700 Malus domestica HOM05D005259 ORTHO05D006402 1.3e-141 508.4 1069 34.1
FAN22G1888 Fragaria x ananassa HOM05D005259 ORTHO05D006402 6.3e-141 506.1 1103 34.9
FvH4_4g02690 Fragaria vesca HOM05D005259 ORTHO05D006402 1.4e-140 505.0 1107 35.2
Potri.010G076700 Populus trichocarpa HOM05D005259 ORTHO05D006402 3.1e-140 503.8 1098 35.1
Sabra08G0123900 Salix brachista HOM05D005259 ORTHO05D006402 9.1e-140 502.3 1082 33.5
RcHm_v2.0_Chr4g0390511 Rosa chinensis HOM05D005259 ORTHO05D006402 1.0e-138 498.8 1080 34.5
CSS0027429 Camellia sinensis var. sinensis HOM05D005259 ORTHO05D006402 2.7e-136 490.7 1122 33.3
TWI73G0531 Tripterygium wilfordii HOM05D005259 ORTHO05D006402 7.9e-136 489.2 1099 34.8
FAN17G1158 Fragaria x ananassa HOM05D005259 ORTHO05D006402 1.0e-135 488.8 1119 34.4
CSS0043582 Camellia sinensis var. sinensis HOM05D005259 ORTHO05D006402 5.1e-135 486.5 1121 33.9
VMungo0720G1316 Vigna mungo HOM05D005259 ORTHO05D006402 2.0e-134 484.6 768 44.0
Manes.15G037000 Manihot esculenta HOM05D005259 ORTHO05D006402 4.8e-133 479.9 1046 34.0
Hma1.2p1_0650F.1_g195420 Hydrangea macrophylla HOM05D005259 ORTHO05D006402 1.5e-129 468.4 1092 34.7
Cpa.g.sc58.48 Carica papaya HOM05D005259 ORTHO05D006402 1.9e-129 468.0 1112 34.1
Sabra10G0032100 Salix brachista HOM05D005259 ORTHO05D006402 3.0e-127 460.7 1048 32.8
Lalb_Chr02g0150411 Lupinus albus HOM05D005259 ORTHO05D006402 3.9e-127 460.3 766 42.6
GSVIVG01018119001 Vitis vinifera HOM05D005259 ORTHO05D006402 5.7e-126 456.4 1109 33.1
Lalb_Chr06g0169311 Lupinus albus HOM05D005259 ORTHO05D006402 1.6e-123 448.4 755 42.3
Actinidia04478 Actinidia chinensis HOM05D005259 ORTHO05D002253 4.7e-120 436.8 1060 33.5
Phvul.007G125900 Phaseolus vulgaris HOM05D005259 ORTHO05D006402 4.4e-118 430.3 754 42.0
MD13G1207300 Malus domestica HOM05D005259 ORTHO05D006402 1.4e-116 425.2 1079 31.8
MBI04_g07579_MAGBIO Magnolia biondii HOM05D005259 ORTHO05D006402 5.9e-115 419.9 1173 31.1
Lj5g0013708 Lotus japonicus HOM05D005259 ORTHO05D006402 4.2e-113 413.7 762 41.7
Nitab4.5_0004798g0010 Nicotiana tabacum HOM05D005259 ORTHO05D006402 1.6e-112 411.8 1043 32.1
Peaxi162Scf00813g00016 Petunia axillaris HOM05D005259 ORTHO05D006402 4.7e-112 410.2 1061 31.6
Sopen09g032310 Solanum pennellii HOM05D005259 ORTHO05D006402 8.0e-112 409.5 1059 32.7
CAN.G1007.13 Capsicum annuum HOM05D005259 ORTHO05D006402 1.5e-110 405.2 1049 31.9
Sc13g0005040 Simmondsia chinensis HOM05D005259 ORTHO05D006402 3.4e-110 404.1 1112 31.9
MELO3C006469.2 Cucumis melo HOM05D005259 ORTHO05D006402 9.8e-110 402.5 1073 31.5
PGSC0003DMG400001126 Solanum tuberosum HOM05D005259 ORTHO05D006402 2.8e-109 401.0 1047 31.8
Gohir.A09G223300 Gossypium hirsutum HOM05D005259 ORTHO05D006402 4.9e-109 400.2 1022 33.3
Rhsim04G0190300 Rhododendron simsii HOM05D005259 ORTHO05D006402 7.0e-108 396.4 1053 31.8
ClCG05G004600 Citrullus lanatus HOM05D005259 ORTHO05D006402 9.1e-108 396.0 1075 32.1
Gorai.006G246800 Gossypium raimondii HOM05D005259 ORTHO05D006402 2.0e-107 394.8 1022 33.2
Gohir.D09G225300 Gossypium hirsutum HOM05D005259 ORTHO05D006402 5.9e-107 393.3 1022 33.3
Nn1g02609 Nelumbo nucifera HOM05D005259 ORTHO05D006402 1.7e-106 391.7 1184 29.7
Cc03_g04860 Coffea canephora HOM05D005259 ORTHO05D006402 6.6e-106 389.8 1060 31.9
vmacro08412 Vaccinium macrocarpon HOM05D005259 ORTHO05D006402 4.2e-105 387.1 1056 31.1
Eucgr.H03158 Eucalyptus grandis HOM05D005259 ORTHO05D006402 2.3e-103 381.3 957 33.5
Nn3g19539 Nelumbo nucifera HOM05D005259 ORTHO05D006402 6.8e-103 379.8 1174 30.1
Sed0002321 Sechium edule HOM05D005259 ORTHO05D006402 8.9e-103 379.4 1064 31.9
PSO210G6035 Papaver somniferum HOM05D005259 ORTHO05D006402 2.6e-102 377.9 1095 30.1
CsaV3_3G012580 Cucumis sativus L. HOM05D005259 ORTHO05D006402 5.7e-102 376.7 1074 30.8
PSO832G3620 Papaver somniferum HOM05D005259 ORTHO05D006402 1.8e-100 371.7 1096 30.3
Oeu049793.2 Olea europaea HOM05D005259 ORTHO05D006402 3.2e-100 370.9 1085 30.1
Aqoxy5G00317 Aquilegia oxysepala HOM05D005259 ORTHO05D006402 1.7e-98 365.2 1161 28.5
Potri.008G162150 Populus trichocarpa HOM05D005259 ORTHO05D006402 1.7e-98 365.2 886 32.3
Sed0017180 Sechium edule HOM05D005259 ORTHO05D006402 8.6e-98 362.8 1086 30.8
Ca_09836_v3 Cicer arietinum L. HOM05D005259 ORTHO05D006402 1.2e-88 332.4 747 37.8
Actinidia40086 Actinidia chinensis HOM05D005259 ORTHO05D006402 8.9e-87 326.2 1012 30.1
MSTRG.9924 Avicennia marina HOM05D005259 ORTHO05D006402 1.2e-86 325.9 1055 30.2
Nitab4.5_0000525g0240 Nicotiana tabacum HOM05D005259 ORTHO05D006402 2.6e-86 324.7 1037 29.7
MSTRG.24702 Avicennia marina HOM05D005259 ORTHO05D006402 9.2e-84 316.2 1100 30.1
Dinv29911 Davidia involucrata HOM05D005259 ORTHO05D006402 5.1e-82 310.5 563 36.8
Sp2g08420 Schrenkiella parvula HOM05D005259 ORTHO05D006402 2.5e-81 308.1 1053 28.8
Aa31LG5G3600 Aethionema arabicum HOM05D005259 ORTHO05D006402 7.3e-81 306.6 1047 30.3
Thhalv10003150m.g Eutrema salsugineum HOM05D005259 ORTHO05D006402 2.6e-78 298.1 1046 28.4
DCAR_002351 Daucus carota HOM05D005259 ORTHO05D006402 2.9e-77 294.7 857 28.9
Carub.0008s0502 Capsella rubella HOM05D005259 ORTHO05D006402 1.1e-71 276.2 742 30.2
AT5G43630 Arabidopsis thaliana HOM05D005259 ORTHO05D006402 1.4e-71 275.8 1041 28.0
Oeu003588.2 Olea europaea HOM05D005259 ORTHO05D006402 6.8e-71 273.5 844 29.1
arahy.Tifrunner.gnm1.ann1.7CP98C Arachis hypogaea HOM05D005259 ORTHO05D006402 6.4e-69 266.9 325 51.4
BcaC06g31686 Brassica carinata HOM05D005259 ORTHO05D006402 5.4e-68 263.8 1040 26.2
BolC7t43150H Brassica oleracea HOM05D005259 ORTHO05D006402 3.5e-67 261.2 726 31.3
BcaC06g34639 Brassica carinata HOM05D005259 ORTHO05D006402 4.6e-67 260.8 726 30.9
C07p26220 Brassica napus HOM05D005259 ORTHO05D006402 4.6e-67 260.8 726 30.9
A06p47780 Brassica napus HOM05D005259 ORTHO05D006402 4.3e-65 254.2 1037 26.1
BcaB07g30565 Brassica carinata HOM05D005259 ORTHO05D006402 9.6e-65 253.1 698 30.5
Dinv44635 Davidia involucrata HOM05D005259 ORTHO05D006402 1.3e-64 252.7 633 34.1
BraA06t27646Z Brassica rapa HOM05D005259 ORTHO05D006402 1.6e-64 252.3 1037 25.9
Medtr1g075280 Medicago truncatula HOM05D005259 ORTHO05D006402 2.6e-62 245.0 515 37.3
arahy.Tifrunner.gnm1.ann1.TEF2FC Arachis hypogaea HOM05D005259 ORTHO05D006402 3.8e-61 241.1 740 29.5
arahy.Tifrunner.gnm1.ann1.YIX0R7 Arachis hypogaea HOM05D005259 ORTHO05D006402 8.4e-61 240.0 742 29.5
TPR.G27199 Trifolium pratense HOM05D005259 ORTHO05D006402 2.7e-59 235.0 727 31.2
ATR0665G554 Amborella trichopoda HOM05D005259 ORTHO05D006402 2.3e-58 231.9 1107 24.8
CDE07G1991 Ceratophyllum demersum HOM05D000989 ORTHO05D006402 2.3e-58 231.9 730 28.5
Haze_11300 Corylus avellana HOM05D005259 ORTHO05D006402 2.2e-53 215.3 488 34.0
CARHR006260 Cardamine hirsuta HOM05D005259 ORTHO05D006402 1.4e-44 186.0 498 29.9
Actinidia08443 Actinidia chinensis HOM05D005259 ORTHO05D006402 2.5e-44 185.3 333 34.8
Solyc09g083390.3 Solanum lycopersicum HOM05D005259 ORTHO05D006402 5.5e-44 184.1 658 29.2
Migut.G00437 Erythranthe guttata HOM05D005259 ORTHO05D006402 1.2e-43 183.0 982 24.8
Dinv44634 Davidia involucrata HOM05D005259 ORTHO05D006402 3.9e-42 177.9 198 47.5
Nitab4.5_0004798g0040 Nicotiana tabacum HOM05D005259 ORTHO05D006402 4.8e-40 171.0 515 29.1
THA.LOC104815985 Tarenaya hassleriana HOM05D000856 ORTHO05D001792 2.6e-38 165.2 308 32.8
Migut.N00239 Erythranthe guttata HOM05D005259 ORTHO05D006402 1.1e-36 159.8 1066 24.6
Actinidia08442 Actinidia chinensis HOM05D005259 ORTHO05D006402 1.9e-36 159.1 527 29.6
Actinidia05464 Actinidia chinensis HOM05D005259 ORTHO05D006402 9.3e-36 156.8 164 49.4
Nitab4.5_0000525g0230 Nicotiana tabacum HOM05D005259 ORTHO05D006402 8.7e-34 150.2 501 30.3
SGA_v2.0_scaffold88G27281 Striga asiatica HOM05D005259 ORTHO05D006402 1.9e-33 149.1 468 28.0
HPP92_018440 Vanilla planifolia HOM05D005259 ORTHO05D006402 5.3e-31 141.0 743 24.6
Os01g0775100 Oryza sativa ssp. japonica HOM05D005259 ORTHO05D006402 9.0e-31 140.2 713 25.1
Lsat_1_v5_gn_5_72841 Lactuca sativa HOM05D005259 ORTHO05D006402 7.7e-30 137.1 163 44.2
Psat4g092760 Pisum sativum HOM05D005259 ORTHO05D006402 2.2e-29 135.6 420 29.8
Nitab4.5_0000036g0130 Nicotiana tabacum HOM05D005259 ORTHO05D006402 8.5e-29 133.7 159 45.9
Dinv29910 Davidia involucrata HOM05D005259 ORTHO05D006402 1.4e-28 132.9 461 30.6
ECA233G4142 Erigeron canadensis HOM05D005259 ORTHO05D006402 1.4e-28 132.9 200 39.5
HanXRQChr13g0424471 Helianthus annuus HOM05D005259 ORTHO05D006402 1.9e-28 132.5 133 46.6
HanXRQChr15g0468851 Helianthus annuus HOM05D005259 ORTHO05D006402 1.9e-28 132.5 136 46.3
Lsat_1_v5_gn_3_123200 Lactuca sativa HOM05D005259 ORTHO05D006402 2.7e-27 128.6 138 44.9
Lj6A656T71 Lonicera japonica HOM05D005259 ORTHO05D006402 2.3e-26 125.6 229 34.1
ECA240G1753 Erigeron canadensis HOM05D005259 ORTHO05D006402 2.5e-25 122.1 136 43.4
HanXRQChr03g0092361 Helianthus annuus HOM05D005259 ORTHO05D006402 2.5e-25 122.1 164 42.1
Cc00_g33140 Coffea canephora HOM05D005259 ORTHO05D006402 9.1e-23 113.6 113 53.1
Glyma.20G205250 Glycine max HOM05D005259 ORTHO05D006402 1.2e-22 113.2 168 45.8
Glyma.20G205301 Glycine max HOM05D005259 ORTHO05D006402 1.5e-22 112.8 181 43.6
SMO111G0058 Selaginella moellendorffii HOM05D007564 ORTHO05D013712 2.6e-22 112.1 305 26.6
SMO205G0008 Selaginella moellendorffii HOM05D007564 ORTHO05D009975 3.2e-20 105.1 313 26.8
MBI04_g45851_MAGBIO Magnolia biondii HOM05D005259 ORTHO05D006402 2.7e-19 102.1 428 27.6
SalBow3G4073 Salvia bowleyana HOM05D005259 ORTHO05D006402 6.1e-19 100.9 129 45.0
SMO276G0057 Selaginella moellendorffii HOM05D007564 ORTHO05D009975 7.9e-19 100.5 341 26.1
TPR.G17184 Trifolium pratense HOM05D005259 ORTHO05D006402 4.4e-17 94.7 59 76.3
RcHm_v2.0_Chr7g0198831 Rosa chinensis HOM05D005259 ORTHO05D006402 4.8e-16 91.3 99 39.4
Zm00001eb151720 Zea mays HOM05D005259 ORTHO05D006402 5.0e-13 81.3 1002 22.6
Cc00_g10240 Coffea canephora HOM05D005259 ORTHO05D006402 2.2e-08 65.9 66 47.0
Lj6A656T72 Lonicera japonica HOM05D005259 ORTHO05D006402 9.1e-07 60.5 79 41.8


User provided reference genes

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