Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
LjContig00155g0018941 Lotus japonicus HOM05D005446 ORTHO05D006597 4.0e-84 314.7 155 100.0
Glyma.14G188600 Glycine max HOM05D005446 ORTHO05D006597 3.1e-68 261.9 155 81.9
Glyma.02G221100 Glycine max HOM05D005446 ORTHO05D006597 6.8e-68 260.8 155 80.6
Ca_05549_v3 Cicer arietinum L. HOM05D005446 ORTHO05D006597 3.2e-65 251.9 154 77.3
Medtr5g068650 Medicago truncatula HOM05D005446 ORTHO05D006597 1.2e-64 250.0 154 77.3
Lalb_Chr10g0102991 Lupinus albus HOM05D005446 ORTHO05D006597 6.0e-64 247.7 155 76.1
Manes.18G108200 Manihot esculenta HOM05D005446 ORTHO05D006597 6.0e-64 247.7 155 76.8
Phvul.001G010300 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 1.3e-63 246.5 155 77.4
Phvul.008G188200 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 1.3e-63 246.5 155 77.4
Haze_00330 Corylus avellana HOM05D005446 ORTHO05D006597 1.5e-62 243.0 155 76.8
Phvul.003G000356 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 1.5e-62 243.0 155 76.8
Phvul.L008700 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 1.9e-62 242.7 155 76.1
Cfa016130 Carpinus fangiana HOM05D005446 ORTHO05D006597 4.3e-62 241.5 155 76.1
Haze_23920 Corylus avellana HOM05D005446 ORTHO05D006597 1.6e-61 239.6 155 76.1
Dinv17279 Davidia involucrata HOM05D005446 ORTHO05D006597 1.4e-60 236.5 155 73.5
COL.COLO4_20178 Corchorus olitorius HOM05D005446 ORTHO05D006597 1.8e-60 236.1 155 71.6
VMungo0647G1380 Vigna mungo HOM05D005446 ORTHO05D006597 1.8e-60 236.1 147 78.2
CiPaw.06G038600 Carya illinoinensis HOM05D005446 ORTHO05D006597 2.3e-60 235.7 155 72.3
Thecc.04G200100 Theobroma cacao HOM05D005446 ORTHO05D006597 2.3e-60 235.7 155 70.3
GSVIVG01038676001 Vitis vinifera HOM05D005446 ORTHO05D006597 2.3e-60 235.7 155 71.6
Duzib151G0274 Durio zibethinus HOM05D005446 ORTHO05D006597 4.0e-60 235.0 155 70.3
TPR.G5849 Trifolium pratense HOM05D005446 ORTHO05D006597 5.2e-60 234.6 154 73.4
Oeu029325.1 Olea europaea HOM05D005446 ORTHO05D006597 1.2e-59 233.4 155 73.5
QL09p006048 Quercus lobata HOM05D005446 ORTHO05D006597 3.4e-59 231.9 154 72.1
MBI12_g19204_MAGBIO Magnolia biondii HOM05D005446 ORTHO05D006597 4.4e-59 231.5 155 70.3
TAR383G0718 Trochodendron aralioides HOM05D005446 ORTHO05D006597 4.4e-59 231.5 155 69.7
unitig_0.g2433 Utricularia gibba HOM05D005446 ORTHO05D006597 4.9e-58 228.0 155 71.6
EL10Ac3g05135 Beta vulgaris HOM05D005446 ORTHO05D006597 6.4e-58 227.6 155 69.7
Potri.015G001200 Populus trichocarpa HOM05D005446 ORTHO05D006597 8.3e-58 227.3 155 71.6
Atru.chr12.2505 Acer truncatum HOM05D005446 ORTHO05D006597 1.4e-57 226.5 155 69.0
AUR62028113 Chenopodium quinoa HOM05D005446 ORTHO05D006597 1.4e-57 226.5 155 69.0
Gohir.A07G102600 Gossypium hirsutum HOM05D005446 ORTHO05D006597 2.4e-57 225.7 155 67.1
Hund09744 Selenicereus undatus HOM05D005446 ORTHO05D006597 2.4e-57 225.7 155 69.0
Atru.chr12.2528 Acer truncatum HOM05D005446 ORTHO05D006597 3.2e-57 225.3 155 68.4
AUR62005952 Chenopodium quinoa HOM05D005446 ORTHO05D006597 3.2e-57 225.3 155 69.0
Lj3A584T51 Lonicera japonica HOM05D005446 ORTHO05D006597 3.2e-57 225.3 155 69.0
TWI18G0511 Tripterygium wilfordii HOM05D005446 ORTHO05D006597 3.2e-57 225.3 155 68.4
MSTRG.26955 Avicennia marina HOM05D005446 ORTHO05D006597 4.1e-57 224.9 155 70.3
CSS0004780 Camellia sinensis var. sinensis HOM05D005446 ORTHO05D006597 9.2e-57 223.8 155 71.0
FAN01G0680 Fragaria x ananassa HOM05D005446 ORTHO05D006597 9.2e-57 223.8 155 71.0
Nn1g09694 Nelumbo nucifera HOM05D005446 ORTHO05D006597 9.2e-57 223.8 155 67.1
Migut.F00126 Erythranthe guttata HOM05D005446 ORTHO05D006597 1.6e-56 223.0 155 69.0
Gorai.001G114700 Gossypium raimondii HOM05D005446 ORTHO05D006597 1.6e-56 223.0 155 66.5
FAN10G1830 Fragaria x ananassa HOM05D005446 ORTHO05D006597 2.1e-56 222.6 155 70.3
Gohir.D07G001000 Gossypium hirsutum HOM05D005446 ORTHO05D006597 2.1e-56 222.6 155 66.5
Lj1A1031T79 Lonicera japonica HOM05D005446 ORTHO05D006597 2.1e-56 222.6 155 67.7
Peaxi162Scf00192g00016 Petunia axillaris HOM05D005446 ORTHO05D006597 2.1e-56 222.6 155 68.4
Eucgr.K00477 Eucalyptus grandis HOM05D005446 ORTHO05D006597 2.7e-56 222.2 155 67.7
FvH4_7g33290 Fragaria vesca HOM05D005446 ORTHO05D006597 2.7e-56 222.2 155 69.7
Actinidia08718 Actinidia chinensis HOM05D005446 ORTHO05D006597 3.5e-56 221.9 155 69.0
Ciclev10006132m.g Citrus clementina HOM05D005446 ORTHO05D006597 3.5e-56 221.9 155 71.0
Eucgr.K00475 Eucalyptus grandis HOM05D005446 ORTHO05D006597 4.6e-56 221.5 155 68.4
FAN03G2203 Fragaria x ananassa HOM05D005446 ORTHO05D006597 4.6e-56 221.5 155 70.3
Peaxi162Scf00038g02639 Petunia axillaris HOM05D005446 ORTHO05D006597 6.0e-56 221.1 155 67.7
Sabra15G0000700 Salix brachista HOM05D005446 ORTHO05D006597 6.0e-56 221.1 155 69.7
CANSAT64G2376 Cannabis sativa HOM05D005446 ORTHO05D006597 1.3e-55 219.9 155 69.0
Eucgr.L02508 Eucalyptus grandis HOM05D005446 ORTHO05D006597 1.3e-55 219.9 155 67.7
RcHm_v2.0_Chr1g0383271 Rosa chinensis HOM05D005446 ORTHO05D006597 1.3e-55 219.9 155 70.3
Cpa.g.sc3.182 Carica papaya HOM05D005446 ORTHO05D006597 2.3e-55 219.2 155 67.1
Gorai.001G000500 Gossypium raimondii HOM05D005446 ORTHO05D006597 2.3e-55 219.2 155 65.2
MD07G1303100 Malus domestica HOM05D005446 ORTHO05D006597 3.0e-55 218.8 155 68.4
vmacro06473 Vaccinium macrocarpon HOM05D005446 ORTHO05D006597 8.6e-55 217.2 155 67.7
Gohir.D07G106600 Gossypium hirsutum HOM05D005446 ORTHO05D006597 1.1e-54 216.9 155 65.2
Prupe.2G321800 Prunus persica HOM05D005446 ORTHO05D006597 3.3e-54 215.3 155 67.1
Potri.015G001000 Populus trichocarpa HOM05D005446 ORTHO05D006597 4.3e-54 214.9 155 68.4
Sopen01g002260 Solanum pennellii HOM05D005446 ORTHO05D006597 4.3e-54 214.9 155 64.5
PSO782G3129 Papaver somniferum HOM05D005446 ORTHO05D006597 7.3e-54 214.2 155 65.2
Rhsim03G0218300 Rhododendron simsii HOM05D005446 ORTHO05D006597 7.3e-54 214.2 155 67.7
SGA_v2.0_scaffold44G16871 Striga asiatica HOM05D005446 ORTHO05D006597 7.3e-54 214.2 174 62.6
PSO170G1626 Papaver somniferum HOM05D005446 ORTHO05D006597 9.5e-54 213.8 155 64.5
Cc02_g16080 Coffea canephora HOM05D005446 ORTHO05D006597 1.2e-53 213.4 155 67.7
Gohir.A03G015000 Gossypium hirsutum HOM05D005446 ORTHO05D006597 2.1e-53 212.6 155 65.8
ClCG09G010380 Citrullus lanatus HOM05D005446 ORTHO05D006597 3.6e-53 211.8 155 66.5
PGSC0003DMG400032145 Solanum tuberosum HOM05D005446 ORTHO05D006597 6.2e-53 211.1 155 63.2
ECA247G1253 Erigeron canadensis HOM05D005446 ORTHO05D006597 1.1e-52 210.3 156 67.3
CSS0007128 Camellia sinensis var. sinensis HOM05D005446 ORTHO05D006597 2.4e-52 209.1 156 66.0
CSS0045409 Camellia sinensis var. sinensis HOM05D005446 ORTHO05D006597 2.4e-52 209.1 156 66.0
DCAR_008034 Daucus carota HOM05D005446 ORTHO05D006597 2.4e-52 209.1 153 64.7
Sed0027394 Sechium edule HOM05D005446 ORTHO05D006597 3.1e-52 208.8 155 64.5
Aa31LG10G6780 Aethionema arabicum HOM05D005446 ORTHO05D006597 4.0e-52 208.4 154 63.0
RcHm_v2.0_Chr3g0479561 Rosa chinensis HOM05D005446 ORTHO05D006597 4.0e-52 208.4 155 67.7
CsaV3_7G024240 Cucumis sativus L. HOM05D005446 ORTHO05D006597 8.9e-52 207.2 155 66.5
TAR629G0354 Trochodendron aralioides HOM05D005446 ORTHO05D006597 1.5e-51 206.5 145 66.9
MD01G1231100 Malus domestica HOM05D005446 ORTHO05D006597 3.4e-51 205.3 147 68.7
CARHR003990 Cardamine hirsuta HOM05D005446 ORTHO05D006597 4.4e-51 204.9 156 62.2
HanXRQChr02g0037361 Helianthus annuus HOM05D005446 ORTHO05D006597 5.8e-51 204.5 155 65.8
Aqoxy5G00887 Aquilegia oxysepala HOM05D005446 ORTHO05D006597 7.6e-51 204.1 152 61.8
CAN.G140.1 Capsicum annuum HOM05D005446 ORTHO05D006597 1.3e-50 203.4 155 61.9
CDE07G1092 Ceratophyllum demersum HOM05D005446 ORTHO05D006597 1.3e-50 203.4 155 60.0
Lsat_1_v5_gn_1_26901 Lactuca sativa HOM05D005446 ORTHO05D006597 2.9e-50 202.2 156 67.3
Zm00001eb200370 Zea mays HOM05D005446 ORTHO05D006597 4.9e-50 201.4 153 62.1
ATR0579G170 Amborella trichopoda HOM05D005446 ORTHO05D006597 6.4e-50 201.1 135 68.1
MELO3C023673.2 Cucumis melo HOM05D005446 ORTHO05D006597 8.4e-50 200.7 155 64.5
Carub.0001s0387 Capsella rubella HOM05D005446 ORTHO05D006597 1.4e-49 199.9 156 60.9
Ah.13g071020 Amaranthus hybridus HOM05D005446 ORTHO05D006597 2.4e-49 199.1 214 50.9
Nitab4.5_0005132g0070 Nicotiana tabacum HOM05D005446 ORTHO05D006597 3.2e-49 198.7 133 71.4
AL1G14320 Arabidopsis lyrata HOM05D005446 ORTHO05D006597 4.2e-49 198.4 156 60.3
DCAR_019328 Daucus carota HOM05D005446 ORTHO05D006597 4.2e-49 198.4 148 66.2
HPP92_023794 Vanilla planifolia HOM05D005446 ORTHO05D006597 4.2e-49 198.4 155 60.0
Solyc01g006260.4 Solanum lycopersicum HOM05D005446 ORTHO05D006597 5.4e-49 198.0 145 63.4
HanXRQChr02g0037371 Helianthus annuus HOM05D005446 ORTHO05D006597 9.2e-49 197.2 151 64.2
Thhalv10009004m.g Eutrema salsugineum HOM05D005446 ORTHO05D006597 1.2e-48 196.8 156 60.3
AT1G04635 Arabidopsis thaliana HOM05D005446 ORTHO05D006597 1.6e-48 196.4 156 59.6
Nitab4.5_0022559g0010 Nicotiana tabacum HOM05D005446 ORTHO05D006597 6.0e-48 194.5 127 72.4
Psat2g060440 Pisum sativum HOM05D005446 ORTHO05D006597 6.0e-48 194.5 148 64.2
Os05g0270500 Oryza sativa ssp. japonica HOM05D005446 ORTHO05D006597 3.9e-47 191.8 136 69.9
QL04p035447 Quercus lobata HOM05D005446 ORTHO05D006597 3.9e-47 191.8 146 65.1
Os04g0295100 Oryza sativa ssp. japonica HOM05D005446 ORTHO05D006597 6.6e-47 191.0 163 62.0
MD07G1302900 Malus domestica HOM05D005446 ORTHO05D006597 1.1e-46 190.3 155 62.6
THA.LOC104820657 Tarenaya hassleriana HOM05D005446 ORTHO05D006597 1.1e-46 190.3 156 58.3
Eucgr.K00052 Eucalyptus grandis HOM05D005446 ORTHO05D006597 2.1e-45 186.0 150 62.7
SHI13471 Sapria himalayana HOM05D005446 ORTHO05D006597 2.8e-45 185.7 188 49.5
Eucgr.K00059 Eucalyptus grandis HOM05D005446 ORTHO05D006597 4.0e-44 181.8 150 62.0
BraA10t42580Z Brassica rapa HOM05D002401 ORTHO05D007109 7.6e-43 177.6 154 54.5
A10p03070 Brassica napus HOM05D002401 ORTHO05D007109 9.9e-43 177.2 154 53.9
BolC5t29066H Brassica oleracea HOM05D002401 ORTHO05D007109 9.9e-43 177.2 154 53.9
Sp4g14630 Schrenkiella parvula HOM05D005446 ORTHO05D006597 9.9e-43 177.2 152 53.9
C05p02830 Brassica napus HOM05D002401 ORTHO05D007109 1.3e-42 176.8 154 53.9
Sp1g03470 Schrenkiella parvula HOM05D005446 ORTHO05D006597 2.2e-42 176.0 153 54.9
Thhalv10017414m.g Eutrema salsugineum HOM05D005446 ORTHO05D006597 8.4e-42 174.1 128 61.7
PGR142G4477 Punica granatum HOM05D005446 ORTHO05D006597 8.7e-39 164.1 153 54.9
arahy.Tifrunner.gnm1.ann1.G1Q0KH Arachis hypogaea HOM05D005446 ORTHO05D006597 1.1e-38 163.7 106 69.8
arahy.Tifrunner.gnm1.ann1.PTVQ9K Arachis hypogaea HOM05D005446 ORTHO05D006597 1.9e-38 162.9 106 68.9
TAR362G0055 Trochodendron aralioides HOM05D005446 ORTHO05D006597 9.6e-38 160.6 114 68.4
Sc13g0010680 Simmondsia chinensis HOM05D005446 ORTHO05D006597 2.0e-35 152.9 99 73.7
Ciclev10023849m.g Citrus clementina HOM05D005446 ORTHO05D006597 1.3e-34 150.2 103 68.9
QL09p006020 Quercus lobata HOM05D005446 ORTHO05D006597 1.1e-33 147.1 91 75.8
FAN10G3034 Fragaria x ananassa HOM05D005446 ORTHO05D006597 1.9e-33 146.4 104 70.2
TPR.G27917 Trifolium pratense HOM05D005446 ORTHO05D006597 4.2e-33 145.2 154 52.6
SEGI_01150 Sequoiadendron giganteum HOM05D005446 ORTHO05D006597 5.4e-33 144.8 144 48.6
Pp3c14_9250 Physcomitrium patens HOM05D005446 ORTHO05D006597 8.1e-29 131.0 128 53.1
Oeu055421.1 Olea europaea HOM05D005446 ORTHO05D006597 9.0e-28 127.5 112 59.8
AagrBONN_evm.TU.Sc2ySwM_117.1519 Anthoceros agrestis HOM05D005446 ORTHO05D006597 1.2e-27 127.1 137 47.4
CDE05G0789 Ceratophyllum demersum HOM05D002553 ORTHO05D002767 5.8e-27 124.8 149 47.7
QL09p006057 Quercus lobata HOM05D000605 ORTHO05D001937 2.7e-24 115.9 83 66.3
Phvul.L004350 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 1.8e-20 103.2 68 73.5
SMO356G0648 Selaginella moellendorffii HOM05D005446 ORTHO05D006597 2.4e-20 102.8 153 37.9
Mapoly0096s0024 Marchantia polymorpha HOM05D005446 ORTHO05D006597 5.3e-20 101.7 131 40.5
Phvul.003G000382 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 5.3e-20 101.7 61 77.0
Phvul.L006525 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 5.3e-20 101.7 61 77.0
Psat2g148960 Pisum sativum HOM05D005446 ORTHO05D006597 1.6e-16 90.1 50 82.0
Cre01.g026100 Chlamydomonas reinhardtii HOM05D005446 ORTHO05D006597 8.7e-15 84.3 129 35.7
MELO3C018158.2 Cucumis melo HOM05D005446 ORTHO05D006597 6.5e-10 68.2 68 51.5
MCO15G566 Micromonas commoda HOM05D005446 ORTHO05D006597 6.5e-10 68.2 117 29.9


User provided reference genes

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