Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
LjContig00141g0003223 Lotus japonicus HOM05D005540 ORTHO05D006932 4.2e-198 694.5 350 100.0
Medtr5g079730 Medicago truncatula HOM05D005540 ORTHO05D006932 4.4e-163 578.2 324 88.9
TPR.G3482 Trifolium pratense HOM05D005540 ORTHO05D006932 3.7e-162 575.1 340 86.2
Lalb_Chr18g0053271 Lupinus albus HOM05D005540 ORTHO05D006932 1.1e-161 573.5 316 89.6
Ca_05867_v3 Cicer arietinum L. HOM05D005540 ORTHO05D006932 3.4e-160 568.5 309 90.3
Psat2g040920 Pisum sativum HOM05D005540 ORTHO05D006932 5.9e-160 567.8 340 85.6
Glyma.18G038600 Glycine max HOM05D005540 ORTHO05D006932 8.5e-159 563.9 331 86.1
VMungo1383G3344 Vigna mungo HOM05D005540 ORTHO05D006932 8.5e-159 563.9 329 86.3
Phvul.001G232200 Phaseolus vulgaris HOM05D005540 ORTHO05D006932 1.2e-157 560.1 316 87.7
Glyma.11G218700 Glycine max HOM05D005540 ORTHO05D006932 8.0e-157 557.4 333 84.1
CiPaw.03G067900 Carya illinoinensis HOM05D005540 ORTHO05D006932 5.7e-155 551.2 316 87.0
Dinv14871 Davidia involucrata HOM05D005540 ORTHO05D006932 7.4e-155 550.8 316 86.7
CSS0010845 Camellia sinensis var. sinensis HOM05D005540 ORTHO05D006932 2.8e-154 548.9 316 86.1
Potri.017G129000 Populus trichocarpa HOM05D005540 ORTHO05D006932 8.2e-154 547.4 315 86.0
CANSAT78G2033 Cannabis sativa HOM05D005540 ORTHO05D006932 1.4e-153 546.6 314 86.0
Atru.chr4.1672 Acer truncatum HOM05D005540 ORTHO05D006932 1.8e-153 546.2 316 85.8
PGR004G0611 Punica granatum HOM05D005540 ORTHO05D006932 7.0e-153 544.3 339 81.4
Eucgr.F02818 Eucalyptus grandis HOM05D005540 ORTHO05D006932 5.9e-152 541.2 311 85.5
TAR629G0151 Trochodendron aralioides HOM05D005540 ORTHO05D006932 5.9e-152 541.2 316 83.9
Manes.07G054300 Manihot esculenta HOM05D005540 ORTHO05D006932 1.3e-151 540.0 309 85.4
Ciclev10012086m.g Citrus clementina HOM05D005540 ORTHO05D006932 2.2e-151 539.3 317 84.9
Cfa007847 Carpinus fangiana HOM05D005540 ORTHO05D006932 3.8e-151 538.5 316 83.9
COL.COLO4_15705 Corchorus olitorius HOM05D005540 ORTHO05D006932 6.5e-151 537.7 307 85.7
TWI77G0639 Tripterygium wilfordii HOM05D005540 ORTHO05D006932 1.5e-150 536.6 316 84.2
RcHm_v2.0_Chr2g0122561 Rosa chinensis HOM05D005540 ORTHO05D006932 2.5e-150 535.8 316 84.2
Duzib138G0816 Durio zibethinus HOM05D005540 ORTHO05D006932 3.2e-150 535.4 315 84.4
THA.LOC104822414 Tarenaya hassleriana HOM05D005540 ORTHO05D006932 7.2e-150 534.3 314 83.8
arahy.Tifrunner.gnm1.ann1.A8AWVV Arachis hypogaea HOM05D005540 ORTHO05D006932 1.2e-149 533.5 316 84.8
arahy.Tifrunner.gnm1.ann1.IJ36EI Arachis hypogaea HOM05D005540 ORTHO05D006932 1.2e-149 533.5 316 84.8
Thecc.04G122100 Theobroma cacao HOM05D005540 ORTHO05D006932 2.7e-149 532.3 324 82.4
CsaV3_3G021680 Cucumis sativus L. HOM05D005540 ORTHO05D006932 8.0e-149 530.8 309 83.2
MSTRG.23613 Avicennia marina HOM05D005540 ORTHO05D006932 1.0e-148 530.4 317 83.0
C04p44790 Brassica napus HOM05D005540 ORTHO05D006932 3.0e-148 528.9 324 81.5
BraA04t16769Z Brassica rapa HOM05D005540 ORTHO05D006932 4.0e-148 528.5 318 82.4
vmacro18057 Vaccinium macrocarpon HOM05D005540 ORTHO05D006932 8.8e-148 527.3 326 80.4
BcaC02g09619 Brassica carinata HOM05D005540 ORTHO05D006932 1.2e-147 526.9 307 84.4
BolC4t26053H Brassica oleracea HOM05D005540 ORTHO05D006932 1.2e-147 526.9 321 82.6
ECA232G3523 Erigeron canadensis HOM05D005540 ORTHO05D006932 1.2e-147 526.9 307 84.0
Migut.H00866 Erythranthe guttata HOM05D005540 ORTHO05D006932 1.2e-147 526.9 307 83.4
BcaB06g27151 Brassica carinata HOM05D005540 ORTHO05D006932 1.5e-147 526.6 318 82.4
ClCG05G010900 Citrullus lanatus HOM05D005540 ORTHO05D006932 2.0e-147 526.2 319 81.2
Sed0009967 Sechium edule HOM05D005540 ORTHO05D006932 2.6e-147 525.8 307 83.1
Cc07_g08210 Coffea canephora HOM05D005540 ORTHO05D006932 5.7e-147 524.6 321 81.6
Gohir.D11G168100 Gossypium hirsutum HOM05D005540 ORTHO05D006932 5.7e-147 524.6 308 85.1
Gorai.007G179400 Gossypium raimondii HOM05D005540 ORTHO05D006932 5.7e-147 524.6 308 85.1
GSVIVG01030869001 Vitis vinifera HOM05D005540 ORTHO05D006932 5.7e-147 524.6 315 82.9
A04p11070 Brassica napus HOM05D005540 ORTHO05D006932 9.7e-147 523.9 319 82.1
Aqoxy3G00138 Aquilegia oxysepala HOM05D005540 ORTHO05D006932 1.7e-146 523.1 310 83.9
Thhalv10027854m.g Eutrema salsugineum HOM05D005540 ORTHO05D006932 2.8e-146 522.3 307 83.4
Gohir.A11G161800 Gossypium hirsutum HOM05D005540 ORTHO05D006932 1.4e-145 520.0 308 84.4
Sp7g04170 Schrenkiella parvula HOM05D005540 ORTHO05D006932 1.8e-145 519.6 307 83.1
AT5G37850 Arabidopsis thaliana HOM05D005540 ORTHO05D006932 3.1e-145 518.8 307 83.4
Aa31LG9G17310 Aethionema arabicum HOM05D005540 ORTHO05D006932 4.1e-145 518.5 315 81.9
Carub.0007s3304 Capsella rubella HOM05D005540 ORTHO05D006932 4.1e-145 518.5 320 80.9
CARHR214890 Cardamine hirsuta HOM05D005540 ORTHO05D006932 4.1e-145 518.5 315 82.2
Actinidia39198 Actinidia chinensis HOM05D005540 ORTHO05D006932 7.0e-145 517.7 306 84.3
Solyc02g091340.4 Solanum lycopersicum HOM05D005540 ORTHO05D006932 1.2e-144 516.9 307 82.4
Sopen02g035960 Solanum pennellii HOM05D005540 ORTHO05D006932 1.2e-144 516.9 307 82.4
AL7G46750 Arabidopsis lyrata HOM05D005540 ORTHO05D006932 1.7e-143 513.1 307 82.4
Nitab4.5_0004399g0070 Nicotiana tabacum HOM05D005540 ORTHO05D006932 2.2e-143 512.7 344 75.6
FAN28G0493 Fragaria x ananassa HOM05D005540 ORTHO05D006932 2.9e-143 512.3 410 68.3
ATR0686G023 Amborella trichopoda HOM05D005540 ORTHO05D006932 1.5e-142 510.0 316 81.3
PSO017G2970 Papaver somniferum HOM05D005540 ORTHO05D006932 2.5e-142 509.2 317 79.2
Lj4A178T43 Lonicera japonica HOM05D005540 ORTHO05D006932 6.8e-140 501.1 344 76.5
Prupe.3G158100 Prunus persica HOM05D005540 ORTHO05D006932 8.8e-140 500.7 335 76.4
Os12g0600400 Oryza sativa ssp. japonica HOM05D005540 ORTHO05D006932 4.4e-139 498.4 307 78.2
Zm00001eb135500 Zea mays HOM05D005540 ORTHO05D006932 5.7e-139 498.0 305 79.3
Sed0014193 Sechium edule HOM05D005540 ORTHO05D006932 2.2e-138 496.1 310 79.0
EL10Ac2g04488 Beta vulgaris HOM05D005540 ORTHO05D006932 2.0e-136 489.6 348 73.9
CAN.G625.83 Capsicum annuum HOM05D005540 ORTHO05D006932 1.0e-135 487.3 307 79.5
Sabra17G0107500 Salix brachista HOM05D005540 ORTHO05D006932 6.5e-135 484.6 334 76.3
Lsat_1_v5_gn_4_154720 Lactuca sativa HOM05D005540 ORTHO05D006932 6.8e-132 474.6 344 71.8
Duzib133G1255 Durio zibethinus HOM05D005540 ORTHO05D006932 2.0e-131 473.0 307 77.9
SEGI_01535 Sequoiadendron giganteum HOM05D005540 ORTHO05D006932 2.6e-131 472.6 315 74.6
MD12G1075700 Malus domestica HOM05D005540 ORTHO05D006932 3.4e-131 472.2 355 70.1
HPP92_024102 Vanilla planifolia HOM05D005540 ORTHO05D006932 3.7e-130 468.8 364 67.3
Dinv19006 Davidia involucrata HOM05D005540 ORTHO05D006932 8.3e-130 467.6 272 84.6
unitig_0.g2608 Utricularia gibba HOM05D005540 ORTHO05D006932 1.1e-129 467.2 312 75.6
FAN23G2620 Fragaria x ananassa HOM05D005540 ORTHO05D006932 3.1e-129 465.7 318 76.1
arahy.Tifrunner.gnm1.ann1.32A9M8 Arachis hypogaea HOM05D005540 ORTHO05D006932 1.7e-127 459.9 289 80.3
Nitab4.5_0002248g0040 Nicotiana tabacum HOM05D005540 ORTHO05D006932 1.1e-126 457.2 336 71.4
Rhsim08G0085100 Rhododendron simsii HOM05D005540 ORTHO05D006932 1.9e-126 456.4 499 53.7
CDE04G3097 Ceratophyllum demersum HOM05D005540 ORTHO05D006932 3.6e-125 452.2 322 71.4
Peaxi162Scf00803g00528 Petunia axillaris HOM05D005540 ORTHO05D006932 1.3e-122 443.7 311 73.0
PSO478G5258 Papaver somniferum HOM05D005540 ORTHO05D006932 8.3e-122 441.0 259 82.6
QL11p004195 Quercus lobata HOM05D005540 ORTHO05D006932 5.4e-121 438.3 419 58.0
Pp3c7_20600 Physcomitrium patens HOM05D005540 ORTHO05D006932 1.2e-120 437.2 308 70.5
Atru.BG.179.p Acer truncatum HOM05D005540 ORTHO05D006932 1.1e-118 430.6 309 73.8
Mapoly0043s0025 Marchantia polymorpha HOM05D005540 ORTHO05D006932 7.3e-118 427.9 315 66.7
Lsat_1_v5_gn_0_4201 Lactuca sativa HOM05D005540 ORTHO05D006932 3.1e-116 422.5 285 77.2
Pp3c11_8570 Physcomitrium patens HOM05D005540 ORTHO05D006932 5.2e-116 421.8 306 67.3
SGA_v2.0_scaffold49G18144 Striga asiatica HOM05D005540 ORTHO05D006932 6.8e-116 421.4 252 81.3
Sed0021451 Sechium edule HOM05D005540 ORTHO05D006932 1.5e-115 420.2 306 69.0
Sc14g0004860 Simmondsia chinensis HOM05D005540 ORTHO05D006932 1.9e-113 413.3 236 84.3
Ah.10g037980 Amaranthus hybridus HOM05D005540 ORTHO05D006932 4.1e-113 412.1 307 70.0
CDE06G0494 Ceratophyllum demersum HOM05D005540 ORTHO05D006932 2.1e-112 409.8 292 71.9
FvH4_1g24900 Fragaria vesca HOM05D005540 ORTHO05D006932 1.0e-111 407.5 240 83.8
Hma1.2p1_0283F.1_g113550 Hydrangea macrophylla HOM05D005540 ORTHO05D006932 1.9e-110 403.3 307 70.0
SMO117G0213 Selaginella moellendorffii HOM05D005540 ORTHO05D006932 1.2e-109 400.6 300 65.3
SalBow3G0445 Salvia bowleyana HOM05D005540 ORTHO05D006932 1.3e-103 380.6 255 74.1
AagrBONN_evm.TU.Sc2ySwM_344.3276 Anthoceros agrestis HOM05D005540 ORTHO05D006932 1.7e-103 380.2 262 70.2
DCAR_025877 Daucus carota HOM05D005540 ORTHO05D006932 4.2e-97 359.0 219 80.8
MBI16_g05922_MAGBIO Magnolia biondii HOM05D005540 ORTHO05D006932 7.8e-96 354.8 244 72.5
Nn4g24119 Nelumbo nucifera HOM05D005540 ORTHO05D006932 9.6e-94 347.8 314 58.9
HPP92_024131 Vanilla planifolia HOM05D005540 ORTHO05D006932 8.1e-93 344.7 222 77.9
Sed0017329 Sechium edule HOM05D005540 ORTHO05D006932 4.9e-90 335.5 228 71.1
AUR62023244 Chenopodium quinoa HOM05D005540 ORTHO05D006932 8.4e-90 334.7 307 59.9
MCO05G093 Micromonas commoda HOM05D005540 ORTHO05D006932 5.1e-87 325.5 299 56.5
SGA_v2.0_scaffold6G03270 Striga asiatica HOM05D005540 ORTHO05D006932 1.8e-76 290.4 177 79.1
Hund16203 Selenicereus undatus HOM05D005540 ORTHO05D006932 2.4e-76 290.0 184 77.2
Cre03.g173800 Chlamydomonas reinhardtii HOM05D005540 ORTHO05D006932 1.1e-73 281.2 328 47.9
Migut.H00263 Erythranthe guttata HOM05D005540 ORTHO05D006932 4.3e-70 269.2 158 82.9
Haze_14219 Corylus avellana HOM05D005540 ORTHO05D006932 3.1e-68 263.1 202 68.8
FAN26G0473 Fragaria x ananassa HOM05D005540 ORTHO05D006932 1.3e-66 257.7 490 36.7
CBR_g12736 Chara braunii HOM05D005540 ORTHO05D006932 2.7e-64 250.0 153 77.8
Oeu030810.1 Olea europaea HOM05D005540 ORTHO05D006932 3.3e-62 243.0 157 78.3
Cpa.g.sc116.24 Carica papaya HOM05D005540 ORTHO05D006932 9.0e-60 235.0 155 77.4
Nn3g18203 Nelumbo nucifera HOM05D005540 ORTHO05D006932 4.2e-57 226.1 120 89.2
Cpa.g.sc116.26 Carica papaya HOM05D005540 ORTHO05D006932 1.6e-56 224.2 120 87.5
Hund16202 Selenicereus undatus HOM05D005540 ORTHO05D006932 1.8e-47 194.1 228 50.4
SHI09520 Sapria himalayana HOM05D005540 ORTHO05D006932 1.5e-46 191.0 113 79.6
PRCOL_00006483 Prasinoderma coloniale HOM05D005540 ORTHO05D006932 3.8e-42 176.4 267 35.6
Nn3g18202 Nelumbo nucifera HOM05D005540 ORTHO05D006932 7.4e-38 162.2 99 77.8
Haze_26639 Corylus avellana HOM05D005540 ORTHO05D006932 2.0e-35 154.1 287 33.8
Atru.chr4.2426 Acer truncatum HOM05D005540 ORTHO05D006932 1.8e-28 131.0 66 90.9
Cfa022314 Carpinus fangiana HOM05D005540 ORTHO05D006932 4.5e-27 126.3 303 29.4
FAN26G3341 Fragaria x ananassa HOM05D005540 ORTHO05D006932 1.2e-24 118.2 58 98.3
AUR62023196 Chenopodium quinoa HOM05D005540 ORTHO05D006932 8.0e-24 115.5 56 98.2
SalBow3G4194 Salvia bowleyana HOM05D005540 ORTHO05D006932 8.0e-24 115.5 90 71.1
Hma1.2p1_0179F.1_g079120 Hydrangea macrophylla HOM05D005540 ORTHO05D006932 2.3e-23 114.0 64 87.5
MELO3C031731.2 Cucumis melo HOM05D005540 ORTHO05D006932 2.6e-22 110.5 63 81.0
MELO3C020384.2 Cucumis melo HOM05D005540 ORTHO05D006932 8.3e-21 105.5 70 68.6
SHI09525 Sapria himalayana HOM05D005540 ORTHO05D006932 1.0e-18 98.6 67 76.1
SEGI_04261 Sequoiadendron giganteum HOM05D005540 ORTHO05D006932 1.1e-12 78.6 60 65.0
arahy.Tifrunner.gnm1.ann1.XYVL4V Arachis hypogaea HOM05D005540 ORTHO05D023714 1.6e-11 74.7 43 79.1
Hma1.2p1_0179F.1_g079130 Hydrangea macrophylla HOM05D005540 ORTHO05D006932 1.7e-10 71.2 33 93.9
SHI09501 Sapria himalayana HOM05D005540 ORTHO05D006932 2.3e-07 60.8 55 56.4
A09p41800 Brassica napus HOM05D005536 ORTHO05D006999 6.8e-07 59.3 90 37.8
BraA09t39668Z Brassica rapa HOM05D005536 ORTHO05D006999 6.8e-07 59.3 102 34.3
C05p22080 Brassica napus HOM05D005536 ORTHO05D006999 8.9e-07 58.9 90 37.8
BolC5t30904H Brassica oleracea HOM05D005536 ORTHO05D006999 8.9e-07 58.9 90 37.8
AT1G22940 Arabidopsis thaliana HOM05D005536 ORTHO05D006999 1.2e-06 58.5 102 34.3
BcaB07g32292 Brassica carinata HOM05D005536 ORTHO05D006999 1.5e-06 58.2 90 37.8
Sp1g20400 Schrenkiella parvula HOM05D005536 ORTHO05D006999 1.5e-06 58.2 90 36.7
AL1G36500 Arabidopsis lyrata HOM05D005536 ORTHO05D006999 2.0e-06 57.8 102 34.3
Duzib132G1177 Durio zibethinus HOM05D005536 ORTHO05D006999 2.0e-06 57.8 130 31.5
Thhalv10007358m.g Eutrema salsugineum HOM05D005536 ORTHO05D006999 2.0e-06 57.8 98 33.7
PGR042G3208 Punica granatum HOM05D005536 ORTHO05D006999 2.6e-06 57.4 110 31.8
unitig_748.g8492 Utricularia gibba HOM05D005540 ORTHO05D425961 4.4e-06 56.6 110 36.4
BcaC05g26200 Brassica carinata HOM05D005536 ORTHO05D006999 5.8e-06 56.2 90 36.7
CARHR023320 Cardamine hirsuta HOM05D005536 ORTHO05D006999 9.8e-06 55.5 145 30.3
Potri.003G015700 Populus trichocarpa HOM05D005536 ORTHO05D006999 9.8e-06 55.5 102 34.3


User provided reference genes

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