Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9C47T0 Lonicera japonica HOM05D001760 ORTHO05D001691 1.2e-46 189.5 98 100.0
Lj9C35T7 Lonicera japonica HOM05D001760 ORTHO05D001691 1.5e-15 86.3 52 86.5
vmacro05227 Vaccinium macrocarpon HOM05D001760 ORTHO05D001691 8.8e-13 77.0 54 75.9
Gohir.D03G026450 Gossypium hirsutum HOM05D001760 ORTHO05D001691 1.1e-10 70.1 49 73.5
PGR004G0267 Punica granatum HOM05D001760 ORTHO05D001691 5.9e-09 64.3 42 78.6
CANSAT01G1330 Cannabis sativa HOM05D001760 ORTHO05D001691 1.0e-08 63.5 41 78.0
CiPaw.01G008600 Carya illinoinensis HOM05D001760 ORTHO05D001691 1.0e-08 63.5 41 78.0
COL.COLO4_11514 Corchorus olitorius HOM05D001760 ORTHO05D001691 1.0e-08 63.5 41 78.0
MELO3C020869.2 Cucumis melo HOM05D000261 ORTHO05D002902 1.0e-08 63.5 41 78.0
CsaV3_2G016590 Cucumis sativus L. HOM05D001760 ORTHO05D001691 1.0e-08 63.5 41 78.0
Manes.12G109600 Manihot esculenta HOM05D001760 ORTHO05D001691 1.0e-08 63.5 41 78.0
Rhsim08G0096400 Rhododendron simsii HOM05D001760 ORTHO05D001691 1.0e-08 63.5 41 78.0
Sed0028090 Sechium edule HOM05D001760 ORTHO05D001691 1.0e-08 63.5 41 78.0
TAR365G0869 Trochodendron aralioides HOM05D001760 ORTHO05D001691 1.0e-08 63.5 51 64.7
Cfa004085 Carpinus fangiana HOM05D001760 ORTHO05D001691 1.3e-08 63.2 41 78.0
Cc07_g06640 Coffea canephora HOM05D001760 ORTHO05D001691 1.3e-08 63.2 41 78.0
Haze_15329 Corylus avellana HOM05D001760 ORTHO05D001691 1.3e-08 63.2 41 78.0
Gohir.A12G067900 Gossypium hirsutum HOM05D001760 ORTHO05D001691 1.3e-08 63.2 41 78.0
Gohir.A12G075033 Gossypium hirsutum HOM05D001760 ORTHO05D001691 1.3e-08 63.2 41 78.0
Gohir.D12G072400 Gossypium hirsutum HOM05D001760 ORTHO05D001691 1.3e-08 63.2 41 78.0
Lsat_1_v5_gn_4_162241 Lactuca sativa HOM05D001760 ORTHO05D001691 1.3e-08 63.2 41 78.0
Lj7C86G4 Lonicera japonica HOM05D001760 ORTHO05D001691 1.3e-08 63.2 41 78.0
Potri.005G144700 Populus trichocarpa HOM05D001760 ORTHO05D001691 1.3e-08 63.2 41 78.0
Potri.007G051000 Populus trichocarpa HOM05D001760 ORTHO05D001691 1.3e-08 63.2 41 78.0
Sabra05G0114600 Salix brachista HOM05D001760 ORTHO05D001691 1.3e-08 63.2 41 78.0
Sabra05G0115500 Salix brachista HOM05D001760 ORTHO05D001691 1.3e-08 63.2 41 78.0
Ca_15025_v3 Cicer arietinum L. HOM05D001760 ORTHO05D001691 1.7e-08 62.8 41 78.0
FAN28G2089 Fragaria x ananassa HOM05D001760 ORTHO05D001691 1.7e-08 62.8 41 78.0
Medtr3g466220 Medicago truncatula HOM05D001760 ORTHO05D001691 1.7e-08 62.8 41 78.0
Psat0s165g0040 Pisum sativum HOM05D001760 ORTHO05D001691 1.7e-08 62.8 41 78.0
Prupe.6G225600 Prunus persica HOM05D001760 ORTHO05D001691 1.7e-08 62.8 41 78.0
TPR.G24975 Trifolium pratense HOM05D001760 ORTHO05D001691 1.7e-08 62.8 41 78.0
AL7G13370 Arabidopsis lyrata HOM05D001760 ORTHO05D001691 2.2e-08 62.4 41 75.6
AL4G12980 Arabidopsis lyrata HOM05D001760 ORTHO05D001691 2.9e-08 62.0 41 75.6
AT2G23140 Arabidopsis thaliana HOM05D001760 ORTHO05D001691 2.9e-08 62.0 41 75.6
Carub.0004s0235 Capsella rubella HOM05D001760 ORTHO05D001691 2.9e-08 62.0 41 75.6
CARHR114370 Cardamine hirsuta HOM05D001760 ORTHO05D001691 2.9e-08 62.0 41 75.6
Gorai.003G028100 Gossypium raimondii HOM05D001760 ORTHO05D001691 2.9e-08 62.0 41 75.6
arahy.Tifrunner.gnm1.ann1.6H61SH Arachis hypogaea HOM05D001760 ORTHO05D001691 5.0e-08 61.2 41 73.2
arahy.Tifrunner.gnm1.ann1.PHM8DT Arachis hypogaea HOM05D001760 ORTHO05D001691 5.0e-08 61.2 41 73.2
Glyma.11G161500 Glycine max HOM05D001760 ORTHO05D001691 5.0e-08 61.2 41 75.6
Glyma.18G055200 Glycine max HOM05D001760 ORTHO05D001691 5.0e-08 61.2 41 75.6
Gohir.A02G153900 Gossypium hirsutum HOM05D001760 ORTHO05D001691 5.0e-08 61.2 41 75.6
Rhsim08G0096500 Rhododendron simsii HOM05D001760 ORTHO05D001691 5.0e-08 61.2 39 82.1
Hund25681 Selenicereus undatus HOM05D001760 ORTHO05D001691 5.0e-08 61.2 41 75.6
Thecc.01G066800 Theobroma cacao HOM05D001760 ORTHO05D001691 5.0e-08 61.2 41 75.6
Aa31LG7G13770 Aethionema arabicum HOM05D001760 ORTHO05D001691 6.5e-08 60.8 41 75.6
Cpa.g.sc6.66 Carica papaya HOM05D001760 ORTHO05D001691 6.5e-08 60.8 41 75.6
Duzib187G1688 Durio zibethinus HOM05D001760 ORTHO05D001691 6.5e-08 60.8 41 75.6
Duzib264G0410 Durio zibethinus HOM05D001760 ORTHO05D001691 6.5e-08 60.8 41 75.6
Gorai.008G079700 Gossypium raimondii HOM05D001760 ORTHO05D001691 6.5e-08 60.8 41 75.6
Phvul.008G249400 Phaseolus vulgaris HOM05D001760 ORTHO05D001691 6.5e-08 60.8 41 75.6
Actinidia07395 Actinidia chinensis HOM05D001760 ORTHO05D001691 8.5e-08 60.5 41 75.6
Gohir.D11G205000 Gossypium hirsutum HOM05D001760 ORTHO05D001691 8.5e-08 60.5 42 73.8
Gorai.007G219900 Gossypium raimondii HOM05D001760 ORTHO05D001691 8.5e-08 60.5 42 73.8
Rhsim10G0104900 Rhododendron simsii HOM05D001760 ORTHO05D001691 8.5e-08 60.5 41 75.6
Atru.chr3.218 Acer truncatum HOM05D001760 ORTHO05D001691 1.1e-07 60.1 41 73.2
Atru.chr3.229 Acer truncatum HOM05D001760 ORTHO05D001691 1.1e-07 60.1 41 73.2
arahy.Tifrunner.gnm1.ann1.6XZA8Y Arachis hypogaea HOM05D001760 ORTHO05D001691 1.1e-07 60.1 41 75.6
arahy.Tifrunner.gnm1.ann1.K7JVVM Arachis hypogaea HOM05D001760 ORTHO05D001691 1.1e-07 60.1 41 75.6
Lalb_Chr15g0085981 Lupinus albus HOM05D001760 ORTHO05D001691 1.1e-07 60.1 41 75.6
Ciclev10024899m.g Citrus clementina HOM05D001760 ORTHO05D001691 1.5e-07 59.7 41 73.2
Dinv26889 Davidia involucrata HOM05D001760 ORTHO05D001691 1.5e-07 59.7 41 75.6
Lalb_Chr18g0054361 Lupinus albus HOM05D001760 ORTHO05D001691 1.5e-07 59.7 41 75.6
MBI18_g27142_MAGBIO Magnolia biondii HOM05D001760 ORTHO05D001691 1.5e-07 59.7 41 75.6
TWI73G0164 Tripterygium wilfordii HOM05D001760 ORTHO05D001691 1.5e-07 59.7 42 73.8
VMungo0647G1663 Vigna mungo HOM05D001760 ORTHO05D001691 1.5e-07 59.7 41 73.2
Actinidia12004 Actinidia chinensis HOM05D001760 ORTHO05D001691 1.9e-07 59.3 41 73.2
Gohir.A11G218700 Gossypium hirsutum HOM05D001760 ORTHO05D001691 1.9e-07 59.3 41 73.2
Solyc01g014230.4 Solanum lycopersicum HOM05D001760 ORTHO05D001691 1.9e-07 59.3 41 70.7
Sopen01g008310 Solanum pennellii HOM05D001760 ORTHO05D001691 1.9e-07 59.3 41 70.7
CAN.G7501.1 Capsicum annuum HOM05D001760 ORTHO05D001691 2.5e-07 58.9 40 75.0
Thhalv10000047m.g Eutrema salsugineum HOM05D001760 ORTHO05D001691 2.5e-07 58.9 41 73.2
TWI09G0363 Tripterygium wilfordii HOM05D001760 ORTHO05D001691 2.5e-07 58.9 41 73.2
BcaB06g27883 Brassica carinata HOM05D001760 ORTHO05D001691 3.2e-07 58.5 41 73.2
BcaC02g08567 Brassica carinata HOM05D001760 ORTHO05D001691 3.2e-07 58.5 41 73.2
BcaC07g41004 Brassica carinata HOM05D001760 ORTHO05D001691 3.2e-07 58.5 41 73.2
A04p17690 Brassica napus HOM05D001760 ORTHO05D001691 3.2e-07 58.5 41 70.7
A09p57060 Brassica napus HOM05D000702 ORTHO05D001691 3.2e-07 58.5 41 73.2
C08p40050 Brassica napus HOM05D000702 ORTHO05D001796 3.2e-07 58.5 41 73.2
BolC4t26820H Brassica oleracea HOM05D001760 ORTHO05D001691 3.2e-07 58.5 41 73.2
BolC8t51576H Brassica oleracea HOM05D000702 ORTHO05D001796 3.2e-07 58.5 41 73.2
BraA04t17388Z Brassica rapa HOM05D001760 ORTHO05D001691 3.2e-07 58.5 41 70.7
BraA09t41098Z Brassica rapa HOM05D000702 ORTHO05D001796 3.2e-07 58.5 41 73.2
CAN.G442.7 Capsicum annuum HOM05D001760 ORTHO05D001691 3.2e-07 58.5 41 73.2
THA.LOC104807616 Tarenaya hassleriana HOM05D001760 ORTHO05D001691 3.2e-07 58.5 41 70.7
Aqoxy1G01481 Aquilegia oxysepala HOM05D001760 ORTHO05D001691 4.2e-07 58.2 41 73.2
Hma1.2p1_0239F.1_g099870 Hydrangea macrophylla HOM05D001760 ORTHO05D001691 4.2e-07 58.2 41 73.2
Lj4C158T3 Lonicera japonica HOM05D001760 ORTHO05D001691 4.2e-07 58.2 42 71.4
Oeu023079.1 Olea europaea HOM05D001760 ORTHO05D001691 4.2e-07 58.2 41 73.2
Phvul.006G076000 Phaseolus vulgaris HOM05D001760 ORTHO05D001691 4.2e-07 58.2 41 73.2
ATR0165G061 Amborella trichopoda HOM05D001760 ORTHO05D001691 5.5e-07 57.8 42 71.4
PSO541G4419 Papaver somniferum HOM05D001760 ORTHO05D001691 5.5e-07 57.8 41 70.7
SEGI_05429 Sequoiadendron giganteum HOM05D001760 ORTHO05D001691 5.5e-07 57.8 41 70.7
Glyma.14G202000 Glycine max HOM05D001760 ORTHO05D001691 7.2e-07 57.4 42 71.4
Sabra07G0045100 Salix brachista HOM05D001760 ORTHO05D001691 7.2e-07 57.4 41 68.3
BcaC02g09703 Brassica carinata HOM05D001760 ORTHO05D001691 9.4e-07 57.0 51 58.8
A04p05030 Brassica napus HOM05D001760 ORTHO05D001691 9.4e-07 57.0 51 58.8
C04p37530 Brassica napus HOM05D001760 ORTHO05D001691 9.4e-07 57.0 51 58.8
BolC4t25318H Brassica oleracea HOM05D001760 ORTHO05D001691 9.4e-07 57.0 51 58.8
TWI53G0727 Tripterygium wilfordii HOM05D001760 ORTHO05D001691 9.4e-07 57.0 41 68.3
Os08g0110500 Oryza sativa ssp. japonica HOM05D001760 ORTHO05D001691 1.2e-06 56.6 41 70.7
PSO675G5165 Papaver somniferum HOM05D001760 ORTHO05D001691 1.2e-06 56.6 41 70.7
EL10Ac2g02554 Beta vulgaris HOM05D001760 ORTHO05D001691 1.6e-06 56.2 41 70.7
BcaC04g23208 Brassica carinata HOM05D001760 ORTHO05D001691 1.6e-06 56.2 41 65.9
A09p09430 Brassica napus HOM05D001760 ORTHO05D001691 1.6e-06 56.2 41 65.9
C09p11110 Brassica napus HOM05D001760 ORTHO05D001691 1.6e-06 56.2 41 65.9
BolC9t54000H Brassica oleracea HOM05D001760 ORTHO05D001691 1.6e-06 56.2 41 65.9
BraA09t36592Z Brassica rapa HOM05D001760 ORTHO05D001691 1.6e-06 56.2 41 65.9
Migut.A00589 Erythranthe guttata HOM05D001760 ORTHO05D001691 1.6e-06 56.2 41 73.2
Zm00001eb174100 Zea mays HOM05D001760 ORTHO05D001691 1.6e-06 56.2 41 70.7
Zm00001eb260470 Zea mays HOM05D001760 ORTHO05D001691 1.6e-06 56.2 41 70.7
DCAR_015275 Daucus carota HOM05D001760 ORTHO05D001691 2.1e-06 55.8 43 65.1
Sp4g02200 Schrenkiella parvula HOM05D001760 ORTHO05D001691 2.1e-06 55.8 41 70.7
AL8G43990 Arabidopsis lyrata HOM05D001760 ORTHO05D001691 3.6e-06 55.1 41 65.9
AT5G67340 Arabidopsis thaliana HOM05D001760 ORTHO05D001691 3.6e-06 55.1 41 65.9
GSVIVG01000169001 Vitis vinifera HOM05D001760 ORTHO05D001691 3.6e-06 55.1 41 70.7
BcaB06g27882 Brassica carinata HOM05D001760 ORTHO05D020003 4.7e-06 54.7 61 52.5
Carub.0005s2138 Capsella rubella HOM05D001760 ORTHO05D001691 4.7e-06 54.7 51 56.9
Carub.0008s2715 Capsella rubella HOM05D001760 ORTHO05D001691 4.7e-06 54.7 41 65.9
CARHR280270 Cardamine hirsuta HOM05D001760 ORTHO05D001691 4.7e-06 54.7 41 65.9
Haze_24643 Corylus avellana HOM05D001760 ORTHO05D001691 4.7e-06 54.7 41 68.3
Gohir.D03G026400 Gossypium hirsutum HOM05D000215 ORTHO05D001691 4.7e-06 54.7 41 68.3
Gorai.003G028000 Gossypium raimondii HOM05D001760 ORTHO05D001691 4.7e-06 54.7 41 68.3
Prupe.6G225500 Prunus persica HOM05D001760 ORTHO05D001691 4.7e-06 54.7 41 65.9
AT3G54790 Arabidopsis thaliana HOM05D001760 ORTHO05D001691 6.1e-06 54.3 51 56.9
Sp5g07650 Schrenkiella parvula HOM05D001760 ORTHO05D001691 6.1e-06 54.3 51 56.9
AL5G35870 Arabidopsis lyrata HOM05D001760 ORTHO05D001691 8.0e-06 53.9 51 54.9
AUR62038395 Chenopodium quinoa HOM05D000154 ORTHO05D000092 8.0e-06 53.9 54 51.9
Lalb_Chr17g0345551 Lupinus albus HOM05D001760 ORTHO05D001691 8.0e-06 53.9 41 65.9
SHI32533 Sapria himalayana HOM05D000002 ORTHO05D000001 8.0e-06 53.9 41 68.3


User provided reference genes

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