Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9C409G5 Lonicera japonica HOM05D005082 ORTHO05D006474 5.6e-172 607.4 291 100.0
Nitab4.5_0001220g0040 Nicotiana tabacum HOM05D005082 ORTHO05D006474 6.1e-110 401.4 308 69.2
Actinidia20586 Actinidia chinensis HOM05D005082 ORTHO05D006474 1.5e-105 386.7 386 57.8
Lj5C170T16 Lonicera japonica HOM05D005082 ORTHO05D006474 3.4e-105 385.6 390 58.5
Sed0003916 Sechium edule HOM05D005082 ORTHO05D006474 1.0e-104 384.0 306 67.0
Dinv41859 Davidia involucrata HOM05D005082 ORTHO05D006474 6.5e-104 381.3 381 58.8
vmacro16288 Vaccinium macrocarpon HOM05D005082 ORTHO05D006474 1.9e-103 379.8 381 59.3
TAR628G0288 Trochodendron aralioides HOM05D005082 ORTHO05D006474 2.5e-103 379.4 377 58.1
MBI01_g28404_MAGBIO Magnolia biondii HOM05D005082 ORTHO05D006474 1.6e-102 376.7 373 58.7
Ah.01g017700 Amaranthus hybridus HOM05D005082 ORTHO05D006474 3.0e-101 372.5 375 56.5
EL10Ac9g21557 Beta vulgaris HOM05D005082 ORTHO05D006474 3.0e-101 372.5 377 56.2
Ciclev10028098m.g Citrus clementina HOM05D005082 ORTHO05D006474 6.7e-101 371.3 373 57.9
GSVIVG01023855001 Vitis vinifera HOM05D005082 ORTHO05D006474 8.8e-101 370.9 371 57.7
THA.LOC104800058 Tarenaya hassleriana HOM05D005082 ORTHO05D006474 1.1e-100 370.5 365 57.3
Aa31LG1G17860 Aethionema arabicum HOM05D005082 ORTHO05D006474 1.5e-100 370.2 365 57.5
ATR0605G166 Amborella trichopoda HOM05D005082 ORTHO05D006474 2.0e-100 369.8 374 57.8
AUR62013197 Chenopodium quinoa HOM05D005082 ORTHO05D006474 4.4e-100 368.6 378 57.1
CAN.G1645.8 Capsicum annuum HOM05D005082 ORTHO05D006474 5.7e-100 368.2 374 58.0
Solyc01g112290.4 Solanum lycopersicum HOM05D005082 ORTHO05D006474 9.7e-100 367.5 371 57.7
Atru.chr5.3580 Acer truncatum HOM05D005082 ORTHO05D006474 1.3e-99 367.1 335 60.6
ClCG02G003240 Citrullus lanatus HOM05D005082 ORTHO05D006474 1.3e-99 367.1 376 57.4
Sp2g27120 Schrenkiella parvula HOM05D005082 ORTHO05D006474 1.3e-99 367.1 363 57.6
Sc08g0002050 Simmondsia chinensis HOM05D005082 ORTHO05D006474 1.3e-99 367.1 373 57.9
CsaV3_7G002150 Cucumis sativus L. HOM05D005082 ORTHO05D006474 1.7e-99 366.7 376 57.4
AUR62010207 Chenopodium quinoa HOM05D005082 ORTHO05D006474 2.2e-99 366.3 380 56.6
Manes.02G091600 Manihot esculenta HOM05D005082 ORTHO05D006474 2.2e-99 366.3 340 59.7
CiPaw.05G095000 Carya illinoinensis HOM05D005082 ORTHO05D006474 2.8e-99 365.9 381 56.4
Glyma.03G097900 Glycine max HOM05D005082 ORTHO05D006474 2.8e-99 365.9 370 57.6
Sopen01g054400 Solanum pennellii HOM05D005082 ORTHO05D006474 2.8e-99 365.9 371 57.1
TWI59G1375 Tripterygium wilfordii HOM05D005082 ORTHO05D006474 2.8e-99 365.9 373 57.9
AT5G64050 Arabidopsis thaliana HOM05D005082 ORTHO05D006474 3.7e-99 365.5 363 57.6
MELO3C015693.2 Cucumis melo HOM05D005082 ORTHO05D006474 4.8e-99 365.2 374 57.0
AL8G41310 Arabidopsis lyrata HOM05D005082 ORTHO05D006474 6.3e-99 364.8 363 57.3
Sed0020521 Sechium edule HOM05D005082 ORTHO05D006474 1.1e-98 364.0 375 56.5
Cc09_g10910 Coffea canephora HOM05D005082 ORTHO05D006474 1.4e-98 363.6 395 54.4
CARHR277960 Cardamine hirsuta HOM05D005082 ORTHO05D006474 2.4e-98 362.8 370 56.8
Carub.0008s2483 Capsella rubella HOM05D005082 ORTHO05D006474 3.1e-98 362.5 364 57.1
PGR042G3506 Punica granatum HOM05D005082 ORTHO05D006474 4.1e-98 362.1 380 55.0
Aqoxy6G02995 Aquilegia oxysepala HOM05D005082 ORTHO05D006474 9.1e-98 360.9 377 55.2
VMungo0331G1808 Vigna mungo HOM05D005082 ORTHO05D006474 9.1e-98 360.9 370 57.3
Gohir.D01G012800 Gossypium hirsutum HOM05D005082 ORTHO05D006474 1.2e-97 360.5 378 55.8
Gorai.002G014600 Gossypium raimondii HOM05D005082 ORTHO05D006474 1.2e-97 360.5 378 55.8
Lj3g0023171 Lotus japonicus HOM05D005082 ORTHO05D006474 1.2e-97 360.5 370 55.7
Thecc.02G148100 Theobroma cacao HOM05D005082 ORTHO05D006474 1.2e-97 360.5 372 56.7
RcHm_v2.0_Chr6g0277491 Rosa chinensis HOM05D005082 ORTHO05D006474 2.0e-97 359.8 341 60.7
Peaxi162Scf00362g00137 Petunia axillaris HOM05D005082 ORTHO05D006474 2.6e-97 359.4 363 56.2
Atru.BG.54.p Acer truncatum HOM05D005082 ORTHO05D006474 4.5e-97 358.6 314 62.7
Cpa.g.c29182.1 Carica papaya HOM05D005082 ORTHO05D006474 5.9e-97 358.2 378 55.6
DCAR_001519 Daucus carota HOM05D005082 ORTHO05D006474 7.7e-97 357.8 336 58.9
Duzib248G1564 Durio zibethinus HOM05D005082 ORTHO05D006474 7.7e-97 357.8 363 57.0
Glyma.07G124000 Glycine max HOM05D005082 ORTHO05D006474 7.7e-97 357.8 370 56.5
Prupe.8G016800 Prunus persica HOM05D005082 ORTHO05D006474 7.7e-97 357.8 336 60.4
CDE06G2564 Ceratophyllum demersum HOM05D005082 ORTHO05D006474 1.0e-96 357.5 379 55.7
Potri.009G169700 Populus trichocarpa HOM05D005082 ORTHO05D006474 1.0e-96 357.5 366 56.3
A06p30760 Brassica napus HOM05D005082 ORTHO05D006474 1.3e-96 357.1 363 57.3
Haze_01956 Corylus avellana HOM05D005082 ORTHO05D006474 1.3e-96 357.1 367 56.1
Gohir.A01G011600 Gossypium hirsutum HOM05D005082 ORTHO05D006474 1.3e-96 357.1 378 55.3
PSO675G0919 Papaver somniferum HOM05D005082 ORTHO05D006474 1.3e-96 357.1 375 55.5
Phvul.010G038400 Phaseolus vulgaris HOM05D005082 ORTHO05D006474 1.3e-96 357.1 370 56.8
DCAR_006224 Daucus carota HOM05D005082 ORTHO05D006474 1.7e-96 356.7 333 60.7
BcaC01g02661 Brassica carinata HOM05D005082 ORTHO05D006474 2.9e-96 355.9 363 57.0
C03p62220 Brassica napus HOM05D005082 ORTHO05D006474 2.9e-96 355.9 363 57.0
BolC3t18485H Brassica oleracea HOM05D005082 ORTHO05D006474 2.9e-96 355.9 363 57.0
Eucgr.H05005 Eucalyptus grandis HOM05D005082 ORTHO05D006474 2.9e-96 355.9 379 55.1
Cfa005396 Carpinus fangiana HOM05D005082 ORTHO05D006474 5.0e-96 355.1 316 61.7
Ca_25889_v3 Cicer arietinum L. HOM05D005082 ORTHO05D006474 5.0e-96 355.1 374 55.1
Sabra04G0140300 Salix brachista HOM05D005082 ORTHO05D006474 5.0e-96 355.1 374 55.1
Hund06352 Selenicereus undatus HOM05D005082 ORTHO05D006474 6.5e-96 354.8 376 55.9
FAN20G1299 Fragaria x ananassa HOM05D005082 ORTHO05D006474 1.1e-95 354.0 373 55.8
PSO210G0895 Papaver somniferum HOM05D005082 ORTHO05D006474 1.9e-95 353.2 374 55.1
TPR.G17355 Trifolium pratense HOM05D005082 ORTHO05D006474 1.9e-95 353.2 371 55.3
Rhsim04G0008200 Rhododendron simsii HOM05D005082 ORTHO05D006474 3.2e-95 352.4 360 57.5
Lsat_1_v5_gn_8_119500 Lactuca sativa HOM05D005082 ORTHO05D006474 4.2e-95 352.1 345 58.0
QL11p056821 Quercus lobata HOM05D005082 ORTHO05D006474 4.2e-95 352.1 370 56.2
Lalb_Chr07g0194811 Lupinus albus HOM05D005082 ORTHO05D006474 5.5e-95 351.7 328 60.1
FvH4_2g14910 Fragaria vesca HOM05D005082 ORTHO05D006474 7.2e-95 351.3 329 59.6
FAN24G2999 Fragaria x ananassa HOM05D005082 ORTHO05D006474 7.2e-95 351.3 329 59.6
MD05G1011800 Malus domestica HOM05D005082 ORTHO05D006474 7.2e-95 351.3 336 59.8
ECA233G3220 Erigeron canadensis HOM05D005082 ORTHO05D006474 9.4e-95 350.9 355 55.8
arahy.Tifrunner.gnm1.ann1.44ERQ5 Arachis hypogaea HOM05D005082 ORTHO05D006474 1.2e-94 350.5 393 53.9
Os02g0121000 Oryza sativa ssp. japonica HOM05D005082 ORTHO05D006474 1.6e-94 350.1 372 55.1
arahy.Tifrunner.gnm1.ann1.M18VWQ Arachis hypogaea HOM05D005082 ORTHO05D006474 2.1e-94 349.7 352 57.7
HanXRQChr14g0455171 Helianthus annuus HOM05D005082 ORTHO05D006474 2.7e-94 349.4 345 56.5
Medtr8g009900 Medicago truncatula HOM05D005082 ORTHO05D006474 4.7e-94 348.6 372 54.8
Thhalv10003868m.g Eutrema salsugineum HOM05D005082 ORTHO05D006474 6.1e-94 348.2 390 53.1
MD10G1011800 Malus domestica HOM05D005082 ORTHO05D006474 1.0e-93 347.4 337 60.2
unitig_21.g20422 Utricularia gibba HOM05D005082 ORTHO05D006474 5.2e-93 345.1 329 58.1
Dinv14185 Davidia involucrata HOM05D005082 ORTHO05D006474 5.7e-92 341.7 208 82.2
Migut.B00003 Erythranthe guttata HOM05D005082 ORTHO05D006474 7.4e-92 341.3 371 54.2
FAN15G2332 Fragaria x ananassa HOM05D005082 ORTHO05D006474 9.7e-92 340.9 384 53.6
SalBow1G4726 Salvia bowleyana HOM05D005082 ORTHO05D006474 1.7e-91 340.1 368 52.4
BcaB02g09792 Brassica carinata HOM05D005082 ORTHO05D006474 2.8e-91 339.3 251 69.3
MSTRG.16959 Avicennia marina HOM05D005082 ORTHO05D006474 3.7e-91 339.0 314 58.6
Lalb_Chr12g0210191 Lupinus albus HOM05D005082 ORTHO05D006474 3.7e-91 339.0 250 68.4
Oeu006114.1 Olea europaea HOM05D005082 ORTHO05D006474 4.1e-90 335.5 249 68.7
COL.COLO4_03850 Corchorus olitorius HOM05D005082 ORTHO05D006474 5.3e-90 335.1 372 54.0
QL04p064927 Quercus lobata HOM05D005082 ORTHO05D006474 7.0e-90 334.7 267 66.3
CSS0015047 Camellia sinensis var. sinensis HOM05D005082 ORTHO05D006474 3.5e-89 332.4 394 52.8
BraA06t26018Z Brassica rapa HOM05D005082 ORTHO05D006474 1.1e-87 327.4 381 52.0
AagrBONN_evm.TU.Sc2ySwM_117.3203 Anthoceros agrestis HOM05D005082 ORTHO05D006474 1.0e-85 320.9 338 52.4
Psat4g215760 Pisum sativum HOM05D005082 ORTHO05D006474 3.7e-83 312.4 376 50.5
Psat6g037120 Pisum sativum HOM05D005082 ORTHO05D006474 3.7e-83 312.4 197 78.2
SEGI_01300 Sequoiadendron giganteum HOM05D005082 ORTHO05D006474 3.7e-83 312.4 251 62.5
Mapoly0005s0181 Marchantia polymorpha HOM05D005082 ORTHO05D006474 5.3e-82 308.5 319 53.3
Pp3c1_10010 Physcomitrium patens HOM05D005082 ORTHO05D006474 9.1e-82 307.8 341 51.9
SMO134G0063 Selaginella moellendorffii HOM05D005082 ORTHO05D006474 1.4e-77 293.9 344 49.1
CBR_g25940 Chara braunii HOM05D005082 ORTHO05D006474 2.0e-76 290.0 317 50.2
PRCOL_00001874 Prasinoderma coloniale HOM05D005082 ORTHO05D006474 6.3e-75 285.0 316 48.7
MCO11G616 Micromonas commoda HOM05D005082 ORTHO05D006474 4.1e-74 282.3 348 45.7
FAN27G0598 Fragaria x ananassa HOM05D005082 ORTHO05D006474 1.6e-73 280.4 156 88.5
Cre07.g313700 Chlamydomonas reinhardtii HOM05D005082 ORTHO05D006474 3.5e-73 279.3 344 45.1
Duzib132G0508 Durio zibethinus HOM05D005082 ORTHO05D006474 1.0e-72 277.7 147 91.2
Nitab4.5_0010601g0010 Nicotiana tabacum HOM05D005082 ORTHO05D006474 5.0e-72 275.4 328 51.5
SGA_v2.0_scaffold5G02667 Striga asiatica HOM05D005082 ORTHO05D006474 1.8e-69 266.9 334 47.6
Zm00001eb208250 Zea mays HOM05D005082 ORTHO05D006474 2.5e-63 246.5 131 88.5
Zm00001eb230310 Zea mays HOM05D005082 ORTHO05D006474 5.6e-63 245.4 131 87.8
HanXRQChr14g0432441 Helianthus annuus HOM05D005082 ORTHO05D006474 1.4e-50 204.1 107 89.7
Duzib052G0849 Durio zibethinus HOM05D005082 ORTHO05D006474 4.3e-47 192.6 209 54.1
RcHm_v2.0_Chr2g0162471 Rosa chinensis HOM05D005082 ORTHO05D006474 1.4e-42 177.6 227 48.5
Cfa023769 Carpinus fangiana HOM05D005082 ORTHO05D006474 1.3e-32 144.4 322 31.1
Haze_26742 Corylus avellana HOM05D005082 ORTHO05D006474 4.3e-31 139.4 137 47.4
Aqoxy144s004 Aquilegia oxysepala HOM05D005082 ORTHO05D006474 9.3e-26 121.7 143 40.6
Haze_26758 Corylus avellana HOM05D005082 ORTHO05D006474 3.0e-24 116.7 320 29.1
Zm00001eb428990 Zea mays HOM05D005082 ORTHO05D050782 6.6e-24 115.5 58 93.1
Aqoxy2G01868 Aquilegia oxysepala HOM05D005082 ORTHO05D006474 3.3e-23 113.2 129 51.9
Nitab4.5_0005317g0010 Nicotiana tabacum HOM05D005082 ORTHO05D006474 1.5e-20 104.4 51 94.1
HPP92_019666 Vanilla planifolia HOM05D005082 ORTHO05D006474 1.9e-18 97.4 51 84.3
FAN08G2453 Fragaria x ananassa HOM05D005082 ORTHO05D006474 6.2e-14 82.4 51 80.4
FAN04G1942 Fragaria x ananassa HOM05D005082 ORTHO05D006474 9.0e-13 78.6 51 78.4
SalBow6G7034 Salvia bowleyana HOM05D005082 ORTHO05D050782 2.6e-12 77.0 41 82.9
RcHm_v2.0_Chr3g0490481 Rosa chinensis HOM05D005082 ORTHO05D006474 1.9e-07 60.8 37 73.0
Pp3c2_37890 Physcomitrium patens HOM05D005082 ORTHO05D006474 1.6e-06 57.8 69 43.5


User provided reference genes

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