Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9C35T7 Lonicera japonica HOM05D001760 ORTHO05D001691 7.4e-43 176.8 89 100.0
Lj9C47T0 Lonicera japonica HOM05D001760 ORTHO05D001691 5.9e-16 87.4 52 86.5
vmacro05227 Vaccinium macrocarpon HOM05D001760 ORTHO05D001691 1.1e-14 83.2 52 82.7
Gohir.D03G026450 Gossypium hirsutum HOM05D001760 ORTHO05D001691 4.2e-14 81.3 82 57.3
Gorai.003G028100 Gossypium raimondii HOM05D001760 ORTHO05D001691 5.7e-11 70.9 41 87.8
Cc07_g06640 Coffea canephora HOM05D001760 ORTHO05D001691 9.8e-11 70.1 41 87.8
MELO3C020869.2 Cucumis melo HOM05D000261 ORTHO05D002902 9.8e-11 70.1 41 87.8
CsaV3_2G016590 Cucumis sativus L. HOM05D001760 ORTHO05D001691 9.8e-11 70.1 41 87.8
Lsat_1_v5_gn_4_162241 Lactuca sativa HOM05D001760 ORTHO05D001691 9.8e-11 70.1 41 87.8
Lj7C86G4 Lonicera japonica HOM05D001760 ORTHO05D001691 9.8e-11 70.1 41 87.8
Sed0028090 Sechium edule HOM05D001760 ORTHO05D001691 9.8e-11 70.1 41 87.8
PGR004G0267 Punica granatum HOM05D001760 ORTHO05D001691 1.7e-10 69.3 42 85.7
CANSAT01G1330 Cannabis sativa HOM05D001760 ORTHO05D001691 2.2e-10 68.9 41 85.4
CiPaw.01G008600 Carya illinoinensis HOM05D001760 ORTHO05D001691 2.2e-10 68.9 41 85.4
COL.COLO4_11514 Corchorus olitorius HOM05D001760 ORTHO05D001691 2.2e-10 68.9 41 85.4
Gohir.A12G067900 Gossypium hirsutum HOM05D001760 ORTHO05D001691 2.2e-10 68.9 41 85.4
Gohir.A12G075033 Gossypium hirsutum HOM05D001760 ORTHO05D001691 2.2e-10 68.9 41 85.4
Gohir.D12G072400 Gossypium hirsutum HOM05D001760 ORTHO05D001691 2.2e-10 68.9 41 85.4
Manes.12G109600 Manihot esculenta HOM05D001760 ORTHO05D001691 2.2e-10 68.9 41 85.4
Potri.005G144700 Populus trichocarpa HOM05D001760 ORTHO05D001691 2.2e-10 68.9 41 85.4
Potri.007G051000 Populus trichocarpa HOM05D001760 ORTHO05D001691 2.2e-10 68.9 41 85.4
Rhsim08G0096400 Rhododendron simsii HOM05D001760 ORTHO05D001691 2.2e-10 68.9 41 85.4
Sabra05G0114600 Salix brachista HOM05D001760 ORTHO05D001691 2.2e-10 68.9 41 85.4
Sabra05G0115500 Salix brachista HOM05D001760 ORTHO05D001691 2.2e-10 68.9 41 85.4
TAR365G0869 Trochodendron aralioides HOM05D001760 ORTHO05D001691 2.8e-10 68.6 52 65.4
Aa31LG7G13770 Aethionema arabicum HOM05D001760 ORTHO05D001691 4.9e-10 67.8 41 82.9
AL4G12980 Arabidopsis lyrata HOM05D001760 ORTHO05D001691 4.9e-10 67.8 41 82.9
AT2G23140 Arabidopsis thaliana HOM05D001760 ORTHO05D001691 4.9e-10 67.8 41 82.9
Carub.0004s0235 Capsella rubella HOM05D001760 ORTHO05D001691 4.9e-10 67.8 41 82.9
CARHR114370 Cardamine hirsuta HOM05D001760 ORTHO05D001691 4.9e-10 67.8 41 82.9
Cfa004085 Carpinus fangiana HOM05D001760 ORTHO05D001691 4.9e-10 67.8 41 85.4
Ca_15025_v3 Cicer arietinum L. HOM05D001760 ORTHO05D001691 4.9e-10 67.8 41 85.4
Haze_15329 Corylus avellana HOM05D001760 ORTHO05D001691 4.9e-10 67.8 41 85.4
FAN28G2089 Fragaria x ananassa HOM05D001760 ORTHO05D001691 4.9e-10 67.8 41 82.9
Gohir.D11G205000 Gossypium hirsutum HOM05D001760 ORTHO05D001691 4.9e-10 67.8 42 83.3
Gorai.007G219900 Gossypium raimondii HOM05D001760 ORTHO05D001691 4.9e-10 67.8 42 83.3
Medtr3g466220 Medicago truncatula HOM05D001760 ORTHO05D001691 4.9e-10 67.8 41 85.4
Psat0s165g0040 Pisum sativum HOM05D001760 ORTHO05D001691 4.9e-10 67.8 41 85.4
Prupe.6G225600 Prunus persica HOM05D001760 ORTHO05D001691 4.9e-10 67.8 41 82.9
TPR.G24975 Trifolium pratense HOM05D001760 ORTHO05D001691 4.9e-10 67.8 41 85.4
Glyma.11G161500 Glycine max HOM05D001760 ORTHO05D001691 8.3e-10 67.0 41 82.9
Glyma.18G055200 Glycine max HOM05D001760 ORTHO05D001691 8.3e-10 67.0 41 82.9
TWI73G0164 Tripterygium wilfordii HOM05D001760 ORTHO05D001691 8.3e-10 67.0 42 83.3
Atru.chr3.218 Acer truncatum HOM05D001760 ORTHO05D001691 1.1e-09 66.6 41 82.9
Atru.chr3.229 Acer truncatum HOM05D001760 ORTHO05D001691 1.1e-09 66.6 41 82.9
arahy.Tifrunner.gnm1.ann1.6H61SH Arachis hypogaea HOM05D001760 ORTHO05D001691 1.1e-09 66.6 41 80.5
arahy.Tifrunner.gnm1.ann1.PHM8DT Arachis hypogaea HOM05D001760 ORTHO05D001691 1.1e-09 66.6 41 80.5
Gohir.A02G153900 Gossypium hirsutum HOM05D001760 ORTHO05D001691 1.1e-09 66.6 41 82.9
Gorai.008G079700 Gossypium raimondii HOM05D001760 ORTHO05D001691 1.1e-09 66.6 41 82.9
Hund25681 Selenicereus undatus HOM05D001760 ORTHO05D001691 1.1e-09 66.6 41 82.9
Thecc.01G066800 Theobroma cacao HOM05D001760 ORTHO05D001691 1.1e-09 66.6 41 82.9
Cpa.g.sc6.66 Carica papaya HOM05D001760 ORTHO05D001691 1.4e-09 66.2 41 82.9
Duzib187G1688 Durio zibethinus HOM05D001760 ORTHO05D001691 1.4e-09 66.2 41 82.9
Duzib264G0410 Durio zibethinus HOM05D001760 ORTHO05D001691 1.4e-09 66.2 41 82.9
Gohir.A11G218700 Gossypium hirsutum HOM05D001760 ORTHO05D001691 1.4e-09 66.2 41 82.9
Actinidia07395 Actinidia chinensis HOM05D001760 ORTHO05D001691 1.8e-09 65.9 41 82.9
Lalb_Chr15g0085981 Lupinus albus HOM05D001760 ORTHO05D001691 1.8e-09 65.9 41 82.9
Rhsim10G0104900 Rhododendron simsii HOM05D001760 ORTHO05D001691 1.8e-09 65.9 41 82.9
Lalb_Chr18g0054361 Lupinus albus HOM05D001760 ORTHO05D001691 2.4e-09 65.5 41 82.9
Phvul.008G249400 Phaseolus vulgaris HOM05D001760 ORTHO05D001691 2.4e-09 65.5 41 78.0
Solyc01g014230.4 Solanum lycopersicum HOM05D001760 ORTHO05D001691 2.4e-09 65.5 41 80.5
Sopen01g008310 Solanum pennellii HOM05D001760 ORTHO05D001691 2.4e-09 65.5 41 80.5
AL7G13370 Arabidopsis lyrata HOM05D001760 ORTHO05D001691 3.1e-09 65.1 41 78.0
Dinv26889 Davidia involucrata HOM05D001760 ORTHO05D001691 3.1e-09 65.1 41 82.9
Actinidia12004 Actinidia chinensis HOM05D001760 ORTHO05D001691 4.1e-09 64.7 41 80.5
arahy.Tifrunner.gnm1.ann1.6XZA8Y Arachis hypogaea HOM05D001760 ORTHO05D001691 4.1e-09 64.7 41 82.9
arahy.Tifrunner.gnm1.ann1.K7JVVM Arachis hypogaea HOM05D001760 ORTHO05D001691 4.1e-09 64.7 41 82.9
Thhalv10000047m.g Eutrema salsugineum HOM05D001760 ORTHO05D001691 4.1e-09 64.7 41 80.5
MBI18_g27142_MAGBIO Magnolia biondii HOM05D001760 ORTHO05D001691 4.1e-09 64.7 41 80.5
Oeu023079.1 Olea europaea HOM05D001760 ORTHO05D001691 4.1e-09 64.7 41 80.5
PSO675G5165 Papaver somniferum HOM05D001760 ORTHO05D001691 4.1e-09 64.7 41 82.9
THA.LOC104807616 Tarenaya hassleriana HOM05D001760 ORTHO05D001691 4.1e-09 64.7 41 78.0
BcaB06g27883 Brassica carinata HOM05D001760 ORTHO05D001691 5.4e-09 64.3 41 80.5
BcaC02g08567 Brassica carinata HOM05D001760 ORTHO05D001691 5.4e-09 64.3 41 80.5
BcaC07g41004 Brassica carinata HOM05D001760 ORTHO05D001691 5.4e-09 64.3 41 80.5
A04p17690 Brassica napus HOM05D001760 ORTHO05D001691 5.4e-09 64.3 41 78.0
A09p57060 Brassica napus HOM05D000702 ORTHO05D001691 5.4e-09 64.3 41 80.5
C08p40050 Brassica napus HOM05D000702 ORTHO05D001796 5.4e-09 64.3 41 80.5
BolC4t26820H Brassica oleracea HOM05D001760 ORTHO05D001691 5.4e-09 64.3 41 80.5
BolC8t51576H Brassica oleracea HOM05D000702 ORTHO05D001796 5.4e-09 64.3 41 80.5
BraA04t17388Z Brassica rapa HOM05D001760 ORTHO05D001691 5.4e-09 64.3 41 78.0
BraA09t41098Z Brassica rapa HOM05D000702 ORTHO05D001796 5.4e-09 64.3 41 80.5
Ciclev10024899m.g Citrus clementina HOM05D001760 ORTHO05D001691 5.4e-09 64.3 41 80.5
Hma1.2p1_0239F.1_g099870 Hydrangea macrophylla HOM05D001760 ORTHO05D001691 5.4e-09 64.3 41 82.9
PSO541G4419 Papaver somniferum HOM05D001760 ORTHO05D001691 5.4e-09 64.3 41 80.5
TWI09G0363 Tripterygium wilfordii HOM05D001760 ORTHO05D001691 5.4e-09 64.3 41 80.5
VMungo0647G1663 Vigna mungo HOM05D001760 ORTHO05D001691 5.4e-09 64.3 41 75.6
Aqoxy1G01481 Aquilegia oxysepala HOM05D001760 ORTHO05D001691 7.0e-09 63.9 41 80.5
CAN.G442.7 Capsicum annuum HOM05D001760 ORTHO05D001691 7.0e-09 63.9 41 80.5
CAN.G7501.1 Capsicum annuum HOM05D001760 ORTHO05D001691 7.0e-09 63.9 40 82.5
DCAR_015275 Daucus carota HOM05D001760 ORTHO05D001691 7.0e-09 63.9 43 76.7
Phvul.006G076000 Phaseolus vulgaris HOM05D001760 ORTHO05D001691 7.0e-09 63.9 41 80.5
ATR0165G061 Amborella trichopoda HOM05D001760 ORTHO05D001691 9.2e-09 63.5 42 78.6
Sabra07G0045100 Salix brachista HOM05D001760 ORTHO05D001691 1.2e-08 63.2 41 75.6
Rhsim08G0096500 Rhododendron simsii HOM05D001760 ORTHO05D001691 1.6e-08 62.8 39 79.5
SEGI_05429 Sequoiadendron giganteum HOM05D001760 ORTHO05D001691 1.6e-08 62.8 41 75.6
Glyma.14G202000 Glycine max HOM05D001760 ORTHO05D001691 2.0e-08 62.4 42 73.8
Lj4C158T3 Lonicera japonica HOM05D001760 ORTHO05D001691 2.0e-08 62.4 42 76.2
Os08g0110500 Oryza sativa ssp. japonica HOM05D001760 ORTHO05D001691 2.7e-08 62.0 41 78.0
Zm00001eb174100 Zea mays HOM05D001760 ORTHO05D001691 2.7e-08 62.0 41 78.0
Zm00001eb260470 Zea mays HOM05D001760 ORTHO05D001691 2.7e-08 62.0 41 78.0
EL10Ac2g02554 Beta vulgaris HOM05D001760 ORTHO05D001691 3.5e-08 61.6 41 78.0
Sp4g02200 Schrenkiella parvula HOM05D001760 ORTHO05D001691 3.5e-08 61.6 41 78.0
TWI53G0727 Tripterygium wilfordii HOM05D001760 ORTHO05D001691 3.5e-08 61.6 41 70.7
Migut.A00589 Erythranthe guttata HOM05D001760 ORTHO05D001691 4.5e-08 61.2 41 80.5
BcaC04g23208 Brassica carinata HOM05D001760 ORTHO05D001691 5.9e-08 60.8 41 73.2
A09p09430 Brassica napus HOM05D001760 ORTHO05D001691 5.9e-08 60.8 41 73.2
C09p11110 Brassica napus HOM05D001760 ORTHO05D001691 5.9e-08 60.8 41 73.2
BolC9t54000H Brassica oleracea HOM05D001760 ORTHO05D001691 5.9e-08 60.8 41 73.2
BraA09t36592Z Brassica rapa HOM05D001760 ORTHO05D001691 5.9e-08 60.8 41 73.2
SHI32533 Sapria himalayana HOM05D000002 ORTHO05D000001 5.9e-08 60.8 41 78.0
BcaC02g09703 Brassica carinata HOM05D001760 ORTHO05D001691 1.0e-07 60.1 51 60.8
A04p05030 Brassica napus HOM05D001760 ORTHO05D001691 1.0e-07 60.1 51 60.8
C04p37530 Brassica napus HOM05D001760 ORTHO05D001691 1.0e-07 60.1 51 60.8
BolC4t25318H Brassica oleracea HOM05D001760 ORTHO05D001691 1.0e-07 60.1 51 60.8
Gohir.D03G026400 Gossypium hirsutum HOM05D000215 ORTHO05D001691 1.0e-07 60.1 41 75.6
Gorai.003G028000 Gossypium raimondii HOM05D001760 ORTHO05D001691 1.0e-07 60.1 41 75.6
GSVIVG01000169001 Vitis vinifera HOM05D001760 ORTHO05D001691 1.0e-07 60.1 41 78.0
ATR0736G209 Amborella trichopoda HOM05D001760 ORTHO05D001691 1.3e-07 59.7 42 73.8
CARHR280270 Cardamine hirsuta HOM05D001760 ORTHO05D001691 1.3e-07 59.7 41 73.2
Prupe.6G225500 Prunus persica HOM05D001760 ORTHO05D001691 1.3e-07 59.7 41 70.7
Carub.0008s2715 Capsella rubella HOM05D001760 ORTHO05D001691 1.7e-07 59.3 41 73.2
CDE08G0214 Ceratophyllum demersum HOM05D001760 ORTHO05D001691 1.7e-07 59.3 47 61.7
AUR62038395 Chenopodium quinoa HOM05D000154 ORTHO05D000092 1.7e-07 59.3 52 53.8
CiPaw.03G265400 Carya illinoinensis HOM05D001760 ORTHO05D001691 2.3e-07 58.9 42 71.4
LjContig00141g0000073 Lotus japonicus HOM05D001760 ORTHO05D001691 2.3e-07 58.9 41 75.6
AL8G43990 Arabidopsis lyrata HOM05D001760 ORTHO05D001691 3.9e-07 58.2 41 70.7
AT5G67340 Arabidopsis thaliana HOM05D001760 ORTHO05D001691 3.9e-07 58.2 41 70.7
Thhalv10003745m.g Eutrema salsugineum HOM05D001760 ORTHO05D001691 3.9e-07 58.2 41 70.7
Sp2g29320 Schrenkiella parvula HOM05D001760 ORTHO05D001691 3.9e-07 58.2 41 70.7
arahy.Tifrunner.gnm1.ann1.0JI0VP Arachis hypogaea HOM05D001760 ORTHO05D001691 5.0e-07 57.8 43 67.4
Carub.0005s2138 Capsella rubella HOM05D001760 ORTHO05D001691 5.0e-07 57.8 51 58.8
Haze_24643 Corylus avellana HOM05D001760 ORTHO05D001691 5.0e-07 57.8 41 70.7
Gorai.007G146800 Gossypium raimondii HOM05D001760 ORTHO05D001691 5.0e-07 57.8 43 69.8
Lalb_Chr17g0345551 Lupinus albus HOM05D001760 ORTHO05D001691 5.0e-07 57.8 41 70.7
AT3G54790 Arabidopsis thaliana HOM05D001760 ORTHO05D001691 6.6e-07 57.4 51 58.8
BcaB06g27882 Brassica carinata HOM05D001760 ORTHO05D020003 6.6e-07 57.4 52 59.6
Nn3g19669 Nelumbo nucifera HOM05D001760 ORTHO05D001691 6.6e-07 57.4 41 65.9
Sp5g07650 Schrenkiella parvula HOM05D001760 ORTHO05D001691 6.6e-07 57.4 51 58.8
TAR362G0200 Trochodendron aralioides HOM05D001760 ORTHO05D001691 6.6e-07 57.4 41 70.7
AL5G35870 Arabidopsis lyrata HOM05D001760 ORTHO05D001691 8.6e-07 57.0 51 56.9
TPR.G18475 Trifolium pratense HOM05D001760 ORTHO05D001691 8.6e-07 57.0 42 71.4
Zm00001eb145570 Zea mays HOM05D001760 ORTHO05D001691 1.1e-06 56.6 41 73.2
Psat0s3814g0040 Pisum sativum HOM05D001760 ORTHO05D001691 1.9e-06 55.8 43 67.4
TPR.G22315 Trifolium pratense HOM05D001760 ORTHO05D001691 1.9e-06 55.8 42 66.7
Ah.03g146250 Amaranthus hybridus HOM05D001760 ORTHO05D001691 2.5e-06 55.5 52 51.9
arahy.Tifrunner.gnm1.ann1.VNN39M Arachis hypogaea HOM05D001760 ORTHO05D001691 2.5e-06 55.5 43 62.8
unitig_37.g12640 Utricularia gibba HOM05D000518 ORTHO05D001691 2.5e-06 55.5 41 73.2
BraA09t40227Z Brassica rapa HOM05D001760 ORTHO05D001691 3.3e-06 55.1 51 54.9
CDE01G0383 Ceratophyllum demersum HOM05D001760 ORTHO05D001691 3.3e-06 55.1 41 73.2
Gohir.D11G137100 Gossypium hirsutum HOM05D001760 ORTHO05D001691 3.3e-06 55.1 43 67.4
MSTRG.1787 Avicennia marina HOM05D001760 ORTHO05D001691 4.3e-06 54.7 41 78.0
BcaB01g00162 Brassica carinata HOM05D001760 ORTHO05D001691 4.3e-06 54.7 49 57.1
A09p47700 Brassica napus HOM05D001760 ORTHO05D001691 5.6e-06 54.3 49 55.1
QL09p039285 Quercus lobata HOM05D001760 ORTHO05D001691 5.6e-06 54.3 41 65.9
Aqoxy2G03658 Aquilegia oxysepala HOM05D001760 ORTHO05D001691 7.3e-06 53.9 41 63.4
Ca_08679_v3 Cicer arietinum L. HOM05D001760 ORTHO05D001691 7.3e-06 53.9 42 64.3
Ca_09677_v3 Cicer arietinum L. HOM05D001760 ORTHO05D001691 7.3e-06 53.9 43 60.5
Glyma.10G037500 Glycine max HOM05D001760 ORTHO05D001691 7.3e-06 53.9 42 66.7
SEGI_26941 Sequoiadendron giganteum HOM05D001760 ORTHO05D001691 7.3e-06 53.9 41 68.3
Hund29371 Selenicereus undatus HOM05D001760 ORTHO05D001691 9.5e-06 53.5 41 58.5
Hund29374 Selenicereus undatus HOM05D001760 ORTHO05D001691 9.5e-06 53.5 41 58.5


User provided reference genes

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