Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9C300G1 Lonicera japonica HOM05D003925 ORTHO05D004832 2.3e-238 828.6 428 100.0
Dinv19400 Davidia involucrata HOM05D003925 ORTHO05D004832 5.2e-142 508.4 441 63.9
Lj5C262G4 Lonicera japonica HOM05D003925 ORTHO05D005835 1.2e-138 497.3 433 63.7
Haze_10061 Corylus avellana HOM05D003925 ORTHO05D004832 1.1e-136 490.7 422 64.2
Actinidia39010 Actinidia chinensis HOM05D003925 ORTHO05D004832 1.9e-136 490.0 430 62.1
QL02p100243 Quercus lobata HOM05D003925 ORTHO05D004832 1.9e-136 490.0 433 63.0
Hma1.2p1_0884F.1_g232530 Hydrangea macrophylla HOM05D003925 ORTHO05D004832 2.5e-136 489.6 471 60.3
Nn5g27797 Nelumbo nucifera HOM05D003925 ORTHO05D004832 4.7e-135 485.3 455 59.1
COL.COLO4_17737 Corchorus olitorius HOM05D003925 ORTHO05D004832 5.2e-134 481.9 434 62.9
Actinidia00183 Actinidia chinensis HOM05D003925 ORTHO05D004832 8.9e-134 481.1 445 60.4
Duzib052G0643 Durio zibethinus HOM05D003925 ORTHO05D004832 4.4e-133 478.8 464 58.2
CSS0002231 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 5.7e-133 478.4 447 60.4
Aa31LG4G9470 Aethionema arabicum HOM05D003925 ORTHO05D004832 2.8e-132 476.1 460 58.3
TWI23G0121 Tripterygium wilfordii HOM05D003925 ORTHO05D004832 2.8e-132 476.1 440 62.0
Nn1g08458 Nelumbo nucifera HOM05D003925 ORTHO05D004832 3.7e-132 475.7 453 58.9
Hund15482 Selenicereus undatus HOM05D003925 ORTHO05D004832 8.3e-132 474.6 472 58.7
Gohir.A04G132700 Gossypium hirsutum HOM05D003925 ORTHO05D004832 1.4e-131 473.8 457 59.1
DCAR_006681 Daucus carota HOM05D003925 ORTHO05D004832 1.8e-131 473.4 435 59.5
THA.LOC104799820 Tarenaya hassleriana HOM05D003925 ORTHO05D004832 1.0e-129 467.6 456 59.6
Thhalv10024818m.g Eutrema salsugineum HOM05D003925 ORTHO05D004832 1.7e-129 466.8 429 60.6
Ciclev10000945m.g Citrus clementina HOM05D003925 ORTHO05D004832 2.3e-129 466.5 429 60.1
Lsat_1_v5_gn_7_76521 Lactuca sativa HOM05D003925 ORTHO05D004832 5.0e-129 465.3 456 58.6
Manes.07G023200 Manihot esculenta HOM05D003925 ORTHO05D004832 8.6e-129 464.5 426 60.8
TWI14G0879 Tripterygium wilfordii HOM05D003925 ORTHO05D004832 5.6e-128 461.8 436 60.3
Duzib132G1049 Durio zibethinus HOM05D003925 ORTHO05D004832 1.2e-127 460.7 436 59.9
Lsat_1_v5_gn_9_121141 Lactuca sativa HOM05D003925 ORTHO05D004832 2.8e-127 459.5 443 58.9
Prupe.1G577500 Prunus persica HOM05D003925 ORTHO05D004832 2.8e-127 459.5 440 59.5
PGR142G2211 Punica granatum HOM05D003925 ORTHO05D004832 3.6e-127 459.1 460 58.3
Carub.0007s1672 Capsella rubella HOM05D003925 ORTHO05D004832 8.0e-127 458.0 448 57.1
PGSC0003DMG400024923 Solanum tuberosum HOM05D003925 ORTHO05D004832 8.0e-127 458.0 440 58.0
MSTRG.5212 Avicennia marina HOM05D003925 ORTHO05D004832 1.0e-126 457.6 457 56.7
CARHR231760 Cardamine hirsuta HOM05D003925 ORTHO05D004832 1.0e-126 457.6 465 56.8
TAR381G0375 Trochodendron aralioides HOM05D003925 ORTHO05D004832 1.8e-126 456.8 460 55.2
Gohir.D04G176300 Gossypium hirsutum HOM05D003925 ORTHO05D004832 3.1e-126 456.1 446 58.3
Gorai.012G167900 Gossypium raimondii HOM05D003925 ORTHO05D004832 4.0e-126 455.7 446 58.3
Actinidia26166 Actinidia chinensis HOM05D003925 ORTHO05D004832 8.9e-126 454.5 460 57.0
Sed0019914 Sechium edule HOM05D003925 ORTHO05D004832 2.6e-125 453.0 443 57.8
MD08G1240800 Malus domestica HOM05D003925 ORTHO05D004832 4.4e-125 452.2 434 59.4
AUR62040618 Chenopodium quinoa HOM05D003925 ORTHO05D004832 5.8e-125 451.8 460 56.7
SGA_v2.0_scaffold42G15910 Striga asiatica HOM05D003925 ORTHO05D004832 5.8e-125 451.8 449 57.0
CAN.G798.55 Capsicum annuum HOM05D003925 ORTHO05D004832 1.3e-124 450.7 433 58.2
Cpa.g.sc30.25 Carica papaya HOM05D003925 ORTHO05D004832 1.7e-124 450.3 453 57.6
Aqoxy5G03033 Aquilegia oxysepala HOM05D003925 ORTHO05D004832 2.9e-124 449.5 455 56.7
Glyma.12G167500 Glycine max HOM05D003925 ORTHO05D004832 3.7e-124 449.1 454 56.4
Thecc.02G024000 Theobroma cacao HOM05D003925 ORTHO05D004832 3.7e-124 449.1 433 58.9
Cfa004507 Carpinus fangiana HOM05D003925 ORTHO05D005835 1.1e-123 447.6 428 58.4
Dinv07476 Davidia involucrata HOM05D003925 ORTHO05D005835 1.1e-123 447.6 415 59.8
ECA240G1679 Erigeron canadensis HOM05D003925 ORTHO05D004832 1.1e-123 447.6 442 56.8
FAN04G1563 Fragaria x ananassa HOM05D003925 ORTHO05D004832 1.1e-123 447.6 447 58.2
Ah.03g136840 Amaranthus hybridus HOM05D003925 ORTHO05D004832 1.4e-123 447.2 423 59.6
CANSAT54G0877 Cannabis sativa HOM05D003925 ORTHO05D004832 5.4e-123 445.3 471 55.4
HanXRQChr07g0187361 Helianthus annuus HOM05D003925 ORTHO05D004832 7.0e-123 444.9 445 58.0
Actinidia06473 Actinidia chinensis HOM05D003925 ORTHO05D004832 9.2e-123 444.5 459 56.0
HanXRQChr16g0509421 Helianthus annuus HOM05D003925 ORTHO05D004832 3.5e-122 442.6 431 58.0
Phvul.006G218500 Phaseolus vulgaris HOM05D003925 ORTHO05D004832 3.5e-122 442.6 452 55.8
RcHm_v2.0_Chr7g0220701 Rosa chinensis HOM05D003925 ORTHO05D004832 4.6e-122 442.2 420 60.2
FvH4_5g28340 Fragaria vesca HOM05D003925 ORTHO05D004832 7.8e-122 441.4 447 57.7
MSTRG.16495 Avicennia marina HOM05D003925 ORTHO05D004832 1.0e-121 441.0 452 56.9
MD15G1434000 Malus domestica HOM05D003925 ORTHO05D004832 1.0e-121 441.0 423 59.3
AUR62041951 Chenopodium quinoa HOM05D003925 ORTHO05D004832 3.0e-121 439.5 448 56.5
CDE08G0951 Ceratophyllum demersum HOM05D003925 ORTHO05D004832 5.0e-121 438.7 461 55.3
Manes.10G119400 Manihot esculenta HOM05D003925 ORTHO05D004832 5.0e-121 438.7 458 55.7
Sc07g0004570 Simmondsia chinensis HOM05D003925 ORTHO05D004832 1.1e-120 437.6 473 55.2
Medtr2g005930 Medicago truncatula HOM05D003925 ORTHO05D004832 1.5e-120 437.2 463 52.9
Gohir.D01G174000 Gossypium hirsutum HOM05D003925 ORTHO05D004832 1.9e-120 436.8 454 55.9
Gorai.002G216100 Gossypium raimondii HOM05D003925 ORTHO05D004832 1.9e-120 436.8 454 55.9
Oeu023407.1 Olea europaea HOM05D003925 ORTHO05D004832 4.3e-120 435.6 449 54.3
Peaxi162Scf00011g00941 Petunia axillaris HOM05D003925 ORTHO05D004832 1.2e-119 434.1 455 54.5
EL10Ac6g14144 Beta vulgaris HOM05D003925 ORTHO05D004832 1.6e-119 433.7 419 57.5
Nitab4.5_0002596g0090 Nicotiana tabacum HOM05D003925 ORTHO05D004832 8.0e-119 431.4 445 54.8
FAN18G2864 Fragaria x ananassa HOM05D003925 ORTHO05D004832 1.4e-118 430.6 463 55.5
Psat1g223280 Pisum sativum HOM05D003925 ORTHO05D004832 1.4e-118 430.6 431 55.5
SalBow3G3816 Salvia bowleyana HOM05D003925 ORTHO05D004832 2.3e-118 429.9 450 54.4
Rhsim11G0124300 Rhododendron simsii HOM05D003925 ORTHO05D004832 3.1e-118 429.5 463 53.8
Nitab4.5_0000948g0030 Nicotiana tabacum HOM05D003925 ORTHO05D004832 1.5e-117 427.2 445 55.1
unitig_26.g9028 Utricularia gibba HOM05D003925 ORTHO05D005835 2.6e-117 426.4 458 53.5
Glyma.16G003600 Glycine max HOM05D003925 ORTHO05D004832 3.4e-117 426.0 446 54.9
Oeu000132.1 Olea europaea HOM05D003925 ORTHO05D004832 5.8e-117 425.2 469 53.7
Solyc01g103680.3 Solanum lycopersicum HOM05D003925 ORTHO05D004832 9.8e-117 424.5 435 54.9
Sopen01g046090 Solanum pennellii HOM05D003925 ORTHO05D004832 9.8e-117 424.5 435 54.9
TPR.G2147 Trifolium pratense HOM05D003925 ORTHO05D004832 2.9e-116 422.9 455 52.3
HanXRQChr06g0181341 Helianthus annuus HOM05D003925 ORTHO05D004832 4.9e-116 422.2 440 55.7
Sp6g11590 Schrenkiella parvula HOM05D003925 ORTHO05D004832 4.9e-116 422.2 467 52.7
Migut.N00826 Erythranthe guttata HOM05D003925 ORTHO05D004832 6.4e-116 421.8 462 53.5
VMungo0540G0371 Vigna mungo HOM05D003925 ORTHO05D004832 8.3e-116 421.4 449 54.3
AT4G24330 Arabidopsis thaliana HOM05D003925 ORTHO05D004832 5.4e-115 418.7 464 52.8
MELO3C016507.2 Cucumis melo HOM05D003925 ORTHO05D004832 9.2e-115 417.9 450 54.9
Lj6g0026503 Lotus japonicus HOM05D003925 ORTHO05D004832 1.2e-114 417.5 438 54.3
CiPaw.05G005700 Carya illinoinensis HOM05D003925 ORTHO05D004832 1.6e-114 417.2 462 54.8
vmacro01723 Vaccinium macrocarpon HOM05D003925 ORTHO05D004832 3.5e-114 416.0 435 54.0
ClCG10G007000 Citrullus lanatus HOM05D003925 ORTHO05D004832 6.0e-114 415.2 427 55.3
vmacro19868 Vaccinium macrocarpon HOM05D003925 ORTHO05D004832 1.7e-113 413.7 438 55.0
Sp7g22330 Schrenkiella parvula HOM05D003925 ORTHO05D004832 3.9e-113 412.5 429 55.2
Zm00001eb289240 Zea mays HOM05D003925 ORTHO05D004832 3.9e-113 412.5 425 54.4
Atru.chr6.812 Acer truncatum HOM05D003925 ORTHO05D004832 5.1e-113 412.1 459 52.3
Eucgr.L02024 Eucalyptus grandis HOM05D003925 ORTHO05D004832 6.6e-113 411.8 424 56.8
Atru.chr6.781 Acer truncatum HOM05D003925 ORTHO05D004832 8.6e-113 411.4 459 52.7
AL7G28890 Arabidopsis lyrata HOM05D003925 ORTHO05D004832 1.1e-112 411.0 465 52.7
THA.LOC104800040 Tarenaya hassleriana HOM05D003925 ORTHO05D004832 1.1e-112 411.0 462 53.2
ATR0584G077 Amborella trichopoda HOM05D003925 ORTHO05D004832 2.5e-112 409.8 450 52.2
CiPaw.06G173300 Carya illinoinensis HOM05D003925 ORTHO05D004832 4.3e-112 409.1 427 56.2
Gohir.A01G182900 Gossypium hirsutum HOM05D003925 ORTHO05D004832 7.3e-112 408.3 450 53.6
BraA01t01508Z Brassica rapa HOM05D003925 ORTHO05D004832 1.2e-111 407.5 431 54.8
BraA03t11971Z Brassica rapa HOM05D003925 ORTHO05D004832 1.6e-111 407.1 459 53.2
Eucgr.I02754 Eucalyptus grandis HOM05D003925 ORTHO05D004832 2.1e-111 406.8 424 56.1
C07p53570 Brassica napus HOM05D003925 ORTHO05D004832 1.1e-110 404.4 419 53.7
BolC1t01894H Brassica oleracea HOM05D003925 ORTHO05D004832 1.1e-110 404.4 434 54.4
SEGI_07809 Sequoiadendron giganteum HOM05D003925 ORTHO05D004832 1.4e-110 404.1 452 51.1
C01p19670 Brassica napus HOM05D003925 ORTHO05D004832 2.3e-110 403.3 434 54.1
A01p15700 Brassica napus HOM05D003925 ORTHO05D004832 5.2e-110 402.1 430 54.2
CsaV3_3G006350 Cucumis sativus L. HOM05D003925 ORTHO05D004832 8.9e-110 401.4 463 52.3
Zm00001eb348650 Zea mays HOM05D003925 ORTHO05D004832 2.0e-109 400.2 425 53.6
CSS0020156 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 2.6e-109 399.8 351 61.0
Lalb_Chr15g0090731 Lupinus albus HOM05D003925 ORTHO05D004832 1.7e-108 397.1 438 52.1
arahy.Tifrunner.gnm1.ann1.D6FTCL Arachis hypogaea HOM05D003925 ORTHO05D004832 3.7e-108 396.0 423 53.4
CSS0030901 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 4.9e-108 395.6 342 62.3
BolC7t45848H Brassica oleracea HOM05D003925 ORTHO05D004832 7.1e-107 391.7 419 52.7
A03p55280 Brassica napus HOM05D003925 ORTHO05D004832 1.2e-106 391.0 454 51.5
Carub.0008s0983 Capsella rubella HOM05D003925 ORTHO05D004832 1.2e-106 391.0 460 50.7
Sabra01G0168900 Salix brachista HOM05D003925 ORTHO05D004832 1.6e-106 390.6 447 50.8
BcaC01g04841 Brassica carinata HOM05D003925 ORTHO05D004832 2.1e-106 390.2 472 50.6
Eucgr.L02026 Eucalyptus grandis HOM05D003925 ORTHO05D004832 4.6e-106 389.0 351 61.0
PSO170G6240 Papaver somniferum HOM05D003925 ORTHO05D004832 7.8e-106 388.3 458 50.0
BcaB01g02930 Brassica carinata HOM05D003925 ORTHO05D004832 1.7e-105 387.1 479 49.7
arahy.Tifrunner.gnm1.ann1.0HG9JC Arachis hypogaea HOM05D003925 ORTHO05D004832 6.6e-105 385.2 456 50.2
BcaC06g32885 Brassica carinata HOM05D003925 ORTHO05D004832 1.1e-104 384.4 368 57.1
BolC3t15651H Brassica oleracea HOM05D003925 ORTHO05D004832 1.5e-104 384.0 472 49.8
C03p33290 Brassica napus HOM05D003925 ORTHO05D004832 3.3e-104 382.9 472 49.6
Aa31LG3G6740 Aethionema arabicum HOM05D003925 ORTHO05D004832 5.6e-104 382.1 450 51.1
Potri.004G223000 Populus trichocarpa HOM05D003925 ORTHO05D004832 7.3e-104 381.7 462 49.8
AL8G23900 Arabidopsis lyrata HOM05D003925 ORTHO05D004832 9.5e-104 381.3 430 51.4
AT5G49945 Arabidopsis thaliana HOM05D003925 ORTHO05D004832 9.5e-104 381.3 430 52.1
BcaNung05636 Brassica carinata HOM05D003925 ORTHO05D004832 1.6e-103 380.6 459 49.9
BraA03t14587Z Brassica rapa HOM05D003925 ORTHO05D004832 1.6e-103 380.6 368 56.5
A03p27580 Brassica napus HOM05D003925 ORTHO05D004832 2.8e-103 379.8 459 50.8
Thhalv10013427m.g Eutrema salsugineum HOM05D003925 ORTHO05D004832 1.1e-102 377.9 454 50.2
PSO782G4904 Papaver somniferum HOM05D003925 ORTHO05D004832 1.1e-102 377.9 455 48.8
MBI09_g03430_MAGBIO Magnolia biondii HOM05D003925 ORTHO05D004832 1.1e-99 367.9 454 48.7
CARHR258770 Cardamine hirsuta HOM05D003925 ORTHO05D004832 2.1e-98 363.6 447 49.0
Ca_00045_v3 Cicer arietinum L. HOM05D003925 ORTHO05D004832 2.3e-97 360.1 432 49.1
CDE06G0202 Ceratophyllum demersum HOM05D003925 ORTHO05D004832 8.7e-97 358.2 445 50.1
HPP92_013757 Vanilla planifolia HOM05D003925 ORTHO05D004832 3.4e-93 346.3 447 48.1
CARHR231750 Cardamine hirsuta HOM05D003925 ORTHO05D004832 9.9e-93 344.7 317 58.0
Mapoly0037s0012 Marchantia polymorpha HOM05D003925 ORTHO05D004832 1.3e-92 344.4 458 47.4
SGA_v2.0_scaffold8G04435 Striga asiatica HOM05D003925 ORTHO05D004832 1.4e-91 340.9 327 56.0
Os05g0432400 Oryza sativa ssp. japonica HOM05D003925 ORTHO05D004832 4.6e-90 335.9 420 47.4
SMO356G0110 Selaginella moellendorffii HOM05D003925 ORTHO05D004832 2.1e-82 310.5 410 44.4
SEGI_11230 Sequoiadendron giganteum HOM05D003925 ORTHO05D004832 1.4e-78 297.7 272 57.7
ECA236G3450 Erigeron canadensis HOM05D003925 ORTHO05D004832 5.8e-77 292.4 410 48.0
Pp3c5_6620 Physcomitrium patens HOM05D003925 ORTHO05D004832 3.9e-73 279.6 422 40.3
BcaC09g50878 Brassica carinata HOM05D003925 ORTHO05D004832 9.6e-72 275.0 308 54.9
AagrBONN_evm.TU.Sc2ySwM_362.431 Anthoceros agrestis HOM05D003925 ORTHO05D004832 4.6e-58 229.6 302 43.7
CBR_g4722 Chara braunii HOM05D003925 ORTHO05D004832 1.0e-57 228.4 397 37.0
Cc02_g23030 Coffea canephora HOM05D003925 ORTHO05D004832 5.9e-53 212.6 229 56.3
SHI34757 Sapria himalayana HOM05D003925 ORTHO05D004832 1.1e-43 181.8 263 44.1
Haze_10058 Corylus avellana HOM05D003925 ORTHO05D004832 2.6e-40 170.6 129 72.9
BcaC01g04842 Brassica carinata HOM05D003925 ORTHO05D004832 4.4e-40 169.9 231 44.6
CAN.G697.8 Capsicum annuum HOM05D003925 ORTHO05D004832 1.7e-36 157.9 117 65.0
GSVIVG01023266001 Vitis vinifera HOM05D003925 ORTHO05D004832 1.0e-33 148.7 233 45.9
SEGI_10393 Sequoiadendron giganteum HOM05D003925 ORTHO05D004832 2.2e-28 131.0 143 51.7
CSS0013131 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 1.9e-27 127.9 137 56.9
Lalb_Chr20g0123671 Lupinus albus HOM05D003925 ORTHO05D004832 1.9e-27 127.9 137 52.6
CSS0019842 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 8.8e-25 119.0 129 57.4
Lj6g0024462 Lotus japonicus HOM05D003925 ORTHO05D004832 1.5e-24 118.2 336 31.2
Migut.B00784 Erythranthe guttata HOM05D003925 ORTHO05D004832 4.4e-24 116.7 129 55.8
CARHR216310 Cardamine hirsuta HOM05D003925 ORTHO05D004832 3.7e-23 113.6 99 58.6
Zm00001eb254380 Zea mays HOM05D002934 ORTHO05D004560 1.7e-20 104.8 139 39.6
Zm00001eb276420 Zea mays HOM05D002934 ORTHO05D004560 1.7e-20 104.8 139 39.6
Cre02.g106300 Chlamydomonas reinhardtii HOM05D003925 ORTHO05D004832 3.8e-20 103.6 380 29.5
CAN.G386.33 Capsicum annuum HOM05D003925 ORTHO05D004832 1.6e-13 81.6 70 51.4
AL3G33580 Arabidopsis lyrata HOM05D003925 ORTHO05D004832 2.7e-13 80.9 273 29.3
MCO13G620 Micromonas commoda HOM05D003925 ORTHO05D004832 2.5e-11 74.3 370 26.5
CAN.G963.3 Capsicum annuum HOM05D003925 ORTHO05D004832 1.6e-10 71.6 80 50.0
BolC8t48574H Brassica oleracea HOM05D003925 ORTHO05D004832 8.3e-07 59.3 106 41.5


User provided reference genes

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