Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj8P682T19 Lonicera japonica HOM05D000068 ORTHO05D026885 3.5e-42 174.5 84 100.0
Lju41A19T29 Lonicera japonica HOM05D000068 ORTHO05D000084 6.2e-31 137.1 80 82.5
HanXRQChr15g0487851 Helianthus annuus HOM05D000068 ORTHO05D000084 6.8e-30 133.7 80 78.8
Duzib147G0145 Durio zibethinus HOM05D000068 ORTHO05D000084 1.2e-29 132.9 80 78.8
Duzib264G0420 Durio zibethinus HOM05D000068 ORTHO05D000084 1.2e-29 132.9 80 78.8
COL.COLO4_04791 Corchorus olitorius HOM05D000068 ORTHO05D000084 1.5e-29 132.5 80 77.5
ECA232G4238 Erigeron canadensis HOM05D000068 ORTHO05D000084 1.5e-29 132.5 80 78.8
Gohir.A09G019000 Gossypium hirsutum HOM05D000068 ORTHO05D000084 1.5e-29 132.5 80 78.8
Thecc.04G079200 Theobroma cacao HOM05D000068 ORTHO05D000084 1.5e-29 132.5 80 77.5
Gohir.D09G018400 Gossypium hirsutum HOM05D000068 ORTHO05D000084 2.0e-29 132.1 80 77.5
Gorai.006G021600 Gossypium raimondii HOM05D000068 ORTHO05D000084 2.0e-29 132.1 80 77.5
Cfa007533 Carpinus fangiana HOM05D000068 ORTHO05D000084 3.4e-29 131.3 80 76.2
Haze_14554 Corylus avellana HOM05D000068 ORTHO05D000084 3.4e-29 131.3 80 76.2
Lsat_1_v5_gn_4_178061 Lactuca sativa HOM05D000068 ORTHO05D000084 3.4e-29 131.3 80 80.0
CiPaw.03G028400 Carya illinoinensis HOM05D000068 ORTHO05D000084 7.5e-29 130.2 80 75.0
Gohir.A07G214800 Gossypium hirsutum HOM05D000068 ORTHO05D000084 9.8e-29 129.8 80 76.2
Gohir.D07G221700 Gossypium hirsutum HOM05D000068 ORTHO05D000084 9.8e-29 129.8 80 76.2
Gorai.001G256100 Gossypium raimondii HOM05D000068 ORTHO05D000084 9.8e-29 129.8 80 76.2
CSS0003241 Camellia sinensis var. sinensis HOM05D000068 ORTHO05D000084 1.3e-28 129.4 80 77.5
CSS0040546 Camellia sinensis var. sinensis HOM05D000068 ORTHO05D000084 1.3e-28 129.4 80 77.5
Cc07_g03250 Coffea canephora HOM05D000068 ORTHO05D000084 1.3e-28 129.4 80 77.5
Dinv06531 Davidia involucrata HOM05D000068 ORTHO05D000084 1.3e-28 129.4 80 76.2
Oeu050217.1 Olea europaea HOM05D000068 ORTHO05D000084 1.3e-28 129.4 80 77.5
ECA238G1368 Erigeron canadensis HOM05D000068 ORTHO05D000084 1.7e-28 129.0 80 77.5
HanXRQChr14g0449861 Helianthus annuus HOM05D000068 ORTHO05D000084 1.7e-28 129.0 80 77.5
HanXRQChr09g0265281 Helianthus annuus HOM05D000068 ORTHO05D000084 2.2e-28 128.6 80 75.0
Manes.17G024294 Manihot esculenta HOM05D000068 ORTHO05D000084 2.2e-28 128.6 80 76.2
Sabra17G0072400 Salix brachista HOM05D000068 ORTHO05D000084 2.2e-28 128.6 80 76.2
Atru.chr8.133 Acer truncatum HOM05D000068 ORTHO05D000084 2.9e-28 128.3 80 75.0
Atru.chr8.207 Acer truncatum HOM05D000068 ORTHO05D000084 2.9e-28 128.3 80 75.0
Hma1.2p1_0489F.1_g164010 Hydrangea macrophylla HOM05D000068 ORTHO05D000084 2.9e-28 128.3 80 75.0
Lsat_1_v5_gn_2_89101 Lactuca sativa HOM05D000068 ORTHO05D000084 2.9e-28 128.3 80 76.2
Oeu027780.1 Olea europaea HOM05D000068 ORTHO05D000084 2.9e-28 128.3 80 76.2
Potri.017G081100 Populus trichocarpa HOM05D000068 ORTHO05D000084 2.9e-28 128.3 80 75.0
Solyc02g087870.3 Solanum lycopersicum HOM05D000068 ORTHO05D000084 2.9e-28 128.3 80 75.0
Sopen02g032590 Solanum pennellii HOM05D000068 ORTHO05D000084 2.9e-28 128.3 80 75.0
PGSC0003DMG400001419 Solanum tuberosum HOM05D000068 ORTHO05D000084 2.9e-28 128.3 80 75.0
Lj7A396T69 Lonicera japonica HOM05D000068 ORTHO05D000084 3.7e-28 127.9 80 76.2
Nitab4.5_0000564g0140 Nicotiana tabacum HOM05D000068 ORTHO05D000084 3.7e-28 127.9 80 75.0
Nitab4.5_0006318g0030 Nicotiana tabacum HOM05D000068 ORTHO05D000084 3.7e-28 127.9 80 75.0
Migut.H00909 Erythranthe guttata HOM05D000068 ORTHO05D000084 6.4e-28 127.1 80 76.2
Manes.15G177400 Manihot esculenta HOM05D000068 ORTHO05D000084 6.4e-28 127.1 80 75.0
SalBow1G2626 Salvia bowleyana HOM05D000068 ORTHO05D000084 6.4e-28 127.1 80 76.2
AUR62039825 Chenopodium quinoa HOM05D000068 ORTHO05D000084 8.3e-28 126.7 80 76.2
Ca_04275_v3 Cicer arietinum L. HOM05D000068 ORTHO05D000084 8.3e-28 126.7 80 75.0
DCAR_011141 Daucus carota HOM05D000068 ORTHO05D000084 8.3e-28 126.7 80 75.0
Lj2g0025427 Lotus japonicus HOM05D000068 ORTHO05D000084 8.3e-28 126.7 80 73.8
Prupe.3G269400 Prunus persica HOM05D000068 ORTHO05D000084 8.3e-28 126.7 80 75.0
PGR083G0283 Punica granatum HOM05D000068 ORTHO05D000084 8.3e-28 126.7 80 73.8
Rhsim10G0040500 Rhododendron simsii HOM05D000068 ORTHO05D000084 8.3e-28 126.7 80 76.2
Psat1g074600 Pisum sativum HOM05D000068 ORTHO05D000084 1.1e-27 126.3 80 73.8
QL02p081508 Quercus lobata HOM05D000068 ORTHO05D000084 1.1e-27 126.3 80 73.8
Lalb_Chr02g0159651 Lupinus albus HOM05D000068 ORTHO05D000084 1.4e-27 125.9 80 73.8
vmacro05707 Vaccinium macrocarpon HOM05D000068 ORTHO05D000084 1.4e-27 125.9 80 75.0
MSTRG.15479 Avicennia marina HOM05D000068 ORTHO05D000084 1.9e-27 125.6 80 75.0
Eucgr.J01214 Eucalyptus grandis HOM05D000068 ORTHO05D000084 1.9e-27 125.6 80 75.0
Glyma.19G021500 Glycine max HOM05D000068 ORTHO05D000084 1.9e-27 125.6 80 72.5
Actinidia36020 Actinidia chinensis HOM05D000068 ORTHO05D000084 2.4e-27 125.2 80 76.2
FvH4_6g48960 Fragaria vesca HOM05D000068 ORTHO05D000084 2.4e-27 125.2 80 73.8
FAN05G0634 Fragaria x ananassa HOM05D000068 ORTHO05D000084 2.4e-27 125.2 80 73.8
FAN09G2019 Fragaria x ananassa HOM05D000068 ORTHO05D000084 2.4e-27 125.2 80 73.8
Nn3g17178 Nelumbo nucifera HOM05D000068 ORTHO05D000084 2.4e-27 125.2 80 73.8
Actinidia06082 Actinidia chinensis HOM05D000068 ORTHO05D000084 3.2e-27 124.8 80 76.2
Glyma.13G063700 Glycine max HOM05D000068 ORTHO05D000084 3.2e-27 124.8 80 72.5
Phvul.004G027800 Phaseolus vulgaris HOM05D000068 ORTHO05D000084 3.2e-27 124.8 80 72.5
VMungo0464G1138 Vigna mungo HOM05D000068 ORTHO05D000084 3.2e-27 124.8 80 72.5
CAN.G206.141 Capsicum annuum HOM05D000068 ORTHO05D000084 4.1e-27 124.4 80 75.0
Cpa.g.sc14.14 Carica papaya HOM05D000068 ORTHO05D000084 4.1e-27 124.4 80 76.2
AUR62034389 Chenopodium quinoa HOM05D000068 ORTHO05D000084 4.1e-27 124.4 80 75.0
EL10Ac2g02969 Beta vulgaris HOM05D000068 ORTHO05D000084 5.4e-27 124.0 80 75.0
Hund13220 Selenicereus undatus HOM05D000068 ORTHO05D000084 5.4e-27 124.0 80 75.0
Ciclev10010931m.g Citrus clementina HOM05D000068 ORTHO05D000084 7.0e-27 123.6 80 73.8
Peaxi162Scf00129g00314 Petunia axillaris HOM05D000068 ORTHO05D000084 9.2e-27 123.2 80 72.5
RcHm_v2.0_Chr2g0168761 Rosa chinensis HOM05D000068 ORTHO05D000084 9.2e-27 123.2 80 73.8
arahy.Tifrunner.gnm1.ann1.6J7SPU Arachis hypogaea HOM05D000068 ORTHO05D000084 1.2e-26 122.9 80 71.2
arahy.Tifrunner.gnm1.ann1.WT01JD Arachis hypogaea HOM05D000068 ORTHO05D000084 1.2e-26 122.9 80 71.2
Medtr6g011680 Medicago truncatula HOM05D000068 ORTHO05D000084 1.2e-26 122.9 80 71.2
TAR374G1464 Trochodendron aralioides HOM05D000068 ORTHO05D000084 1.2e-26 122.9 80 71.2
TAR622G0587 Trochodendron aralioides HOM05D000068 ORTHO05D000084 1.2e-26 122.9 80 71.2
FAN02G4098 Fragaria x ananassa HOM05D000068 ORTHO05D000084 1.6e-26 122.5 80 73.8
Sed0012935 Sechium edule HOM05D000068 ORTHO05D000084 1.6e-26 122.5 80 72.5
Sc10g0003700 Simmondsia chinensis HOM05D000068 ORTHO05D000084 1.6e-26 122.5 80 73.8
MSTRG.3232 Avicennia marina HOM05D000068 ORTHO05D000084 2.0e-26 122.1 80 72.5
ClCG09G018320 Citrullus lanatus HOM05D000068 ORTHO05D000084 2.0e-26 122.1 80 71.2
MELO3C021982.2 Cucumis melo HOM05D000068 ORTHO05D000084 2.0e-26 122.1 80 71.2
CsaV3_5G037960 Cucumis sativus L. HOM05D000068 ORTHO05D000084 2.0e-26 122.1 80 71.2
SalBow1G1281 Salvia bowleyana HOM05D000068 ORTHO05D000084 2.7e-26 121.7 80 73.8
SalBow1G1374 Salvia bowleyana HOM05D000068 ORTHO05D000084 2.7e-26 121.7 80 73.8
Zm00001eb424060 Zea mays HOM05D000068 ORTHO05D000084 3.5e-26 121.3 80 70.0
Ah.10g031360 Amaranthus hybridus HOM05D000068 ORTHO05D000084 4.6e-26 120.9 80 75.0
MBI02_g27153_MAGBIO Magnolia biondii HOM05D000068 ORTHO05D000084 4.6e-26 120.9 80 70.0
MBI02_g36695_MAGBIO Magnolia biondii HOM05D000068 ORTHO05D000084 4.6e-26 120.9 80 70.0
HanXRQChr10g0289161 Helianthus annuus HOM05D000068 ORTHO05D026885 6.0e-26 120.6 81 75.3
Hund15620 Selenicereus undatus HOM05D000068 ORTHO05D000084 6.0e-26 120.6 80 71.2
TWI60G0158 Tripterygium wilfordii HOM05D000068 ORTHO05D000084 6.0e-26 120.6 80 72.5
Os04g0459000 Oryza sativa ssp. japonica HOM05D000068 ORTHO05D000084 1.0e-25 119.8 80 71.2
Aqoxy3G00699 Aquilegia oxysepala HOM05D000068 ORTHO05D000084 1.3e-25 119.4 80 68.8
MBI05_g00386_MAGBIO Magnolia biondii HOM05D000068 ORTHO05D000084 1.3e-25 119.4 80 70.0
unitig_736.g22227 Utricularia gibba HOM05D000068 ORTHO05D000084 1.7e-25 119.0 80 70.0
CARHR151870 Cardamine hirsuta HOM05D000068 ORTHO05D000084 2.3e-25 118.6 80 70.0
Aa31LG2G4350 Aethionema arabicum HOM05D000068 ORTHO05D000084 3.0e-25 118.2 80 71.2
AL5G18630 Arabidopsis lyrata HOM05D000068 ORTHO05D000084 3.0e-25 118.2 80 71.2
BcaB04g19487 Brassica carinata HOM05D000068 ORTHO05D000084 3.0e-25 118.2 80 70.0
BcaC06g33648 Brassica carinata HOM05D000068 ORTHO05D000084 3.0e-25 118.2 80 70.0
A06p40290 Brassica napus HOM05D000068 ORTHO05D000084 3.0e-25 118.2 80 70.0
C07p37780 Brassica napus HOM05D000068 ORTHO05D000084 3.0e-25 118.2 80 70.0
BolC7t44296H Brassica oleracea HOM05D000068 ORTHO05D000084 3.0e-25 118.2 80 70.0
BraA06t26947Z Brassica rapa HOM05D000068 ORTHO05D000084 3.0e-25 118.2 80 70.0
Thhalv10003528m.g Eutrema salsugineum HOM05D000068 ORTHO05D000084 3.0e-25 118.2 80 70.0
Lalb_Chr21g0318871 Lupinus albus HOM05D000068 ORTHO05D000084 3.0e-25 118.2 80 68.8
THA.LOC104805459 Tarenaya hassleriana HOM05D000068 ORTHO05D000084 3.0e-25 118.2 80 72.5
AT3G28860 Arabidopsis thaliana HOM05D000068 ORTHO05D000084 5.0e-25 117.5 80 70.0
MD09G1049400 Malus domestica HOM05D000068 ORTHO05D000084 5.0e-25 117.5 80 68.8
MD17G1049600 Malus domestica HOM05D000068 ORTHO05D000084 5.0e-25 117.5 80 70.0
Sed0000686 Sechium edule HOM05D000068 ORTHO05D000084 5.0e-25 117.5 80 67.5
THA.LOC104823199 Tarenaya hassleriana HOM05D000068 ORTHO05D000084 5.0e-25 117.5 80 70.0
Aqoxy3G03333_Aqoxy3G03334 Aquilegia oxysepala HOM05D000068 ORTHO05D000084 6.6e-25 117.1 80 70.0
BcaC06g30890 Brassica carinata HOM05D000068 ORTHO05D000084 6.6e-25 117.1 80 68.8
Sp2g17490 Schrenkiella parvula HOM05D000068 ORTHO05D000084 6.6e-25 117.1 80 68.8
HPP92_004321 Vanilla planifolia HOM05D000068 ORTHO05D000084 6.6e-25 117.1 80 68.8
BcaC04g23860 Brassica carinata HOM05D000068 ORTHO05D000084 1.1e-24 116.3 80 68.8
A09p03820 Brassica napus HOM05D000068 ORTHO05D000084 1.1e-24 116.3 80 68.8
C09p04050 Brassica napus HOM05D000068 ORTHO05D000084 1.1e-24 116.3 80 68.8
BolC9t53335H Brassica oleracea HOM05D000068 ORTHO05D000084 1.1e-24 116.3 80 68.8
BraA09t36020Z Brassica rapa HOM05D000068 ORTHO05D000084 1.1e-24 116.3 80 68.8
TWI32G1037 Tripterygium wilfordii HOM05D000068 ORTHO05D000084 1.1e-24 116.3 80 70.0
PSO063G3353 Papaver somniferum HOM05D000068 ORTHO05D000084 3.3e-24 114.8 80 67.5
THA.LOC104823913 Tarenaya hassleriana HOM05D000068 ORTHO05D000084 3.3e-24 114.8 80 70.0
PSO017G5503 Papaver somniferum HOM05D000068 ORTHO05D000084 7.3e-24 113.6 80 66.2
PSO478G0615 Papaver somniferum HOM05D000068 ORTHO05D000084 7.3e-24 113.6 80 66.2
Medtr2g042310 Medicago truncatula HOM05D000068 ORTHO05D026885 9.5e-24 113.2 73 71.2
PSO832G1212 Papaver somniferum HOM05D000068 ORTHO05D000084 9.5e-24 113.2 80 66.2
HPP92_013071 Vanilla planifolia HOM05D000068 ORTHO05D000084 1.2e-23 112.8 80 66.2
Zm00001eb431930 Zea mays HOM05D000068 ORTHO05D000084 1.2e-23 112.8 80 65.0
unitig_899.g15515 Utricularia gibba HOM05D000068 ORTHO05D000084 1.6e-23 112.5 80 67.5
Zm00001eb068880 Zea mays HOM05D000068 ORTHO05D000084 3.6e-23 111.3 80 63.8
ATR0564G520 Amborella trichopoda HOM05D000068 ORTHO05D000084 8.1e-23 110.2 80 58.8
TPR.G10366 Trifolium pratense HOM05D000068 ORTHO05D000084 2.3e-22 108.6 68 76.5
CDE07G1282 Ceratophyllum demersum HOM05D000068 ORTHO05D000084 4.0e-22 107.8 80 63.8
Rhsim10G0040800 Rhododendron simsii HOM05D000068 ORTHO05D000084 6.8e-22 107.1 80 65.0
SHI06820 Sapria himalayana HOM05D000068 ORTHO05D000084 1.5e-21 105.9 80 61.2
SEGI_19159 Sequoiadendron giganteum HOM05D000068 ORTHO05D000084 1.5e-21 105.9 80 60.0
vmacro05708 Vaccinium macrocarpon HOM05D000068 ORTHO05D000084 7.5e-21 103.6 80 63.8
CDE04G0183 Ceratophyllum demersum HOM05D000068 ORTHO05D000084 1.3e-20 102.8 80 62.5
Rhsim10G0040700 Rhododendron simsii HOM05D000068 ORTHO05D000084 1.9e-19 99.0 80 58.8
vmacro05709 Vaccinium macrocarpon HOM05D000068 ORTHO05D000084 4.1e-19 97.8 80 60.0
Oeu060937.1 Olea europaea HOM05D000068 ORTHO05D000084 3.0e-17 91.7 63 68.3
Pp3c6_7260 Physcomitrium patens HOM05D000068 ORTHO05D000084 6.6e-09 63.9 78 35.9
DCAR_006729 Daucus carota HOM05D000068 ORTHO05D000084 3.3e-08 61.6 57 47.4
CDE09G1185 Ceratophyllum demersum HOM05D000068 ORTHO05D000084 3.6e-07 58.2 75 40.0
SEGI_01071 Sequoiadendron giganteum HOM05D000068 ORTHO05D000084 3.6e-07 58.2 76 34.2
SEGI_21452 Sequoiadendron giganteum HOM05D000068 ORTHO05D000084 3.6e-07 58.2 65 38.5
SMO116G0091 Selaginella moellendorffii HOM05D000068 ORTHO05D000084 8.1e-07 57.0 64 34.4
PSO339G0669 Papaver somniferum HOM05D000068 ORTHO05D000084 1.4e-06 56.2 68 38.2
PSO801G0252 Papaver somniferum HOM05D000068 ORTHO05D000084 1.4e-06 56.2 68 38.2
Atru.chr13.257_Atru.chr13.258 Acer truncatum HOM05D000068 ORTHO05D000084 1.8e-06 55.8 78 33.3
AagrBONN_evm.TU.Sc2ySwM_344.3114 Anthoceros agrestis HOM05D000068 ORTHO05D000084 1.8e-06 55.8 66 31.8
TWI12G1290 Tripterygium wilfordii HOM05D000068 ORTHO05D000084 1.8e-06 55.8 75 30.7
Prupe.1G363000 Prunus persica HOM05D000068 ORTHO05D000084 2.4e-06 55.5 74 32.4
RcHm_v2.0_Chr6g0303271 Rosa chinensis HOM05D000068 ORTHO05D033818 3.1e-06 55.1 78 28.2
EL10Ac7g16637 Beta vulgaris HOM05D000068 ORTHO05D000084 4.0e-06 54.7 77 36.4
Sed0013100 Sechium edule HOM05D000068 ORTHO05D000084 4.0e-06 54.7 66 36.4
CBR_g40861 Chara braunii HOM05D000068 ORTHO05D000084 5.2e-06 54.3 71 32.4
Ciclev10000054m.g Citrus clementina HOM05D000068 ORTHO05D000084 5.2e-06 54.3 68 35.3
Cc06_g04260 Coffea canephora HOM05D000068 ORTHO05D000084 5.2e-06 54.3 63 38.1
Haze_22663 Corylus avellana HOM05D000068 ORTHO05D000084 5.2e-06 54.3 78 30.8
Pp3c1_34680 Physcomitrium patens HOM05D000068 ORTHO05D000084 5.2e-06 54.3 71 36.6
Sc20g0005530 Simmondsia chinensis HOM05D000068 ORTHO05D000084 9.0e-06 53.5 63 39.7


User provided reference genes

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