Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj8C695T10 Lonicera japonica HOM05D000250 ORTHO05D010805 3.9e-12 73.6 39 100.0
Lj8A716G16 Lonicera japonica HOM05D000250 ORTHO05D010805 5.1e-12 73.2 38 100.0
Lj7C721G3 Lonicera japonica HOM05D000250 ORTHO05D002477 1.4e-09 65.1 39 92.3
Oeu045545.1 Olea europaea HOM05D000250 ORTHO05D010805 1.4e-09 65.1 38 86.8
Oeu047071.5 Olea europaea HOM05D000250 ORTHO05D002477 1.4e-09 65.1 38 86.8
DCAR_006220 Daucus carota HOM05D000250 ORTHO05D002477 3.1e-09 63.9 39 89.7
Manes.16G121100 Manihot esculenta HOM05D000250 ORTHO05D002477 3.1e-09 63.9 38 84.2
CAN.G432.2 Capsicum annuum HOM05D000250 ORTHO05D002477 4.0e-09 63.5 38 81.6
PGR044G0202 Punica granatum HOM05D000250 ORTHO05D002477 4.0e-09 63.5 38 84.2
Sopen08g016260 Solanum pennellii HOM05D000250 ORTHO05D002477 4.0e-09 63.5 38 81.6
PGSC0003DMG400020781 Solanum tuberosum HOM05D000250 ORTHO05D002477 4.0e-09 63.5 38 81.6
COL.COLO4_18844 Corchorus olitorius HOM05D000250 ORTHO05D002477 6.9e-09 62.8 39 87.2
Solyc08g061000.4 Solanum lycopersicum HOM05D000250 ORTHO05D002477 6.9e-09 62.8 38 81.6
Thecc.09G026500 Theobroma cacao HOM05D000250 ORTHO05D002477 6.9e-09 62.8 39 87.2
Cpa.g.sc259.6 Carica papaya HOM05D000250 ORTHO05D002477 1.5e-08 61.6 39 84.6
Dinv15952 Davidia involucrata HOM05D000250 ORTHO05D002477 1.5e-08 61.6 39 84.6
Dinv18244 Davidia involucrata HOM05D000250 ORTHO05D002477 1.5e-08 61.6 39 84.6
Duzib150G1667 Durio zibethinus HOM05D000250 ORTHO05D002477 1.5e-08 61.6 39 84.6
Duzib187G1755 Durio zibethinus HOM05D000250 ORTHO05D002477 1.5e-08 61.6 39 84.6
Actinidia22352 Actinidia chinensis HOM05D000250 ORTHO05D002477 2.0e-08 61.2 39 84.6
Manes.03G015600 Manihot esculenta HOM05D000250 ORTHO05D002477 2.6e-08 60.8 39 84.6
PGR044G2045 Punica granatum HOM05D000250 ORTHO05D002477 2.6e-08 60.8 38 78.9
Gohir.A06G098202 Gossypium hirsutum HOM05D000250 ORTHO05D002477 3.4e-08 60.5 39 84.6
Gohir.A13G183300 Gossypium hirsutum HOM05D000250 ORTHO05D002477 3.4e-08 60.5 39 84.6
Gohir.D06G099400 Gossypium hirsutum HOM05D000250 ORTHO05D002477 3.4e-08 60.5 39 84.6
Gorai.010G114300 Gossypium raimondii HOM05D000250 ORTHO05D002477 3.4e-08 60.5 39 84.6
Nitab4.5_0005761g0080 Nicotiana tabacum HOM05D000250 ORTHO05D002477 3.4e-08 60.5 39 82.1
SGA_v2.0_scaffold20G09137 Striga asiatica HOM05D000250 ORTHO05D002477 3.4e-08 60.5 39 84.6
SGA_v2.0_scaffold64G21913 Striga asiatica HOM05D000250 ORTHO05D002477 3.4e-08 60.5 38 86.8
GSVIVG01035843001 Vitis vinifera HOM05D000250 ORTHO05D002477 3.4e-08 60.5 39 82.1
Cc08_g00800 Coffea canephora HOM05D000250 ORTHO05D010805 4.4e-08 60.1 39 82.1
Duzib168G0255 Durio zibethinus HOM05D000250 ORTHO05D002477 4.4e-08 60.1 39 82.1
Gohir.A05G054400 Gossypium hirsutum HOM05D000250 ORTHO05D002477 4.4e-08 60.1 39 84.6
Gohir.D05G056600 Gossypium hirsutum HOM05D000250 ORTHO05D002477 4.4e-08 60.1 39 84.6
Gorai.009G057600 Gossypium raimondii HOM05D000250 ORTHO05D002477 4.4e-08 60.1 39 84.6
Sabra18G0030900 Salix brachista HOM05D000037 ORTHO05D002477 4.4e-08 60.1 39 82.1
Gohir.D08G274000 Gossypium hirsutum HOM05D000250 ORTHO05D002477 7.6e-08 59.3 39 82.1
Gorai.004G292500 Gossypium raimondii HOM05D000250 ORTHO05D002477 7.6e-08 59.3 39 82.1
Nitab4.5_0008357g0020 Nicotiana tabacum HOM05D000250 ORTHO05D002477 7.6e-08 59.3 39 79.5
Peaxi162Scf00073g00720 Petunia axillaris HOM05D000250 ORTHO05D002477 9.9e-08 58.9 39 79.5
Potri.018G028600 Populus trichocarpa HOM05D000250 ORTHO05D002477 9.9e-08 58.9 39 79.5
BcaC03g13357 Brassica carinata HOM05D000250 ORTHO05D002477 1.3e-07 58.5 38 76.3
BcaNung01918 Brassica carinata HOM05D000250 ORTHO05D002477 1.3e-07 58.5 38 76.3
Potri.006G253100 Populus trichocarpa HOM05D000250 ORTHO05D002477 1.3e-07 58.5 39 79.5
SGA_v2.0_scaffold169G38729 Striga asiatica HOM05D000250 ORTHO05D002477 1.3e-07 58.5 40 85.0
Cc05_g01320 Coffea canephora HOM05D000250 ORTHO05D010805 1.7e-07 58.2 39 82.1
Nitab4.5_0000109g0310 Nicotiana tabacum HOM05D000250 ORTHO05D002477 1.7e-07 58.2 39 79.5
Sc23g0006840 Simmondsia chinensis HOM05D000250 ORTHO05D002477 1.7e-07 58.2 39 79.5
Gohir.A08G252400 Gossypium hirsutum HOM05D000250 ORTHO05D002477 2.2e-07 57.8 39 79.5
AL6G21800 Arabidopsis lyrata HOM05D000250 ORTHO05D002477 2.9e-07 57.4 38 73.7
AL6G21810 Arabidopsis lyrata HOM05D000250 ORTHO05D002477 3.8e-07 57.0 38 73.7
AT5G11200 Arabidopsis thaliana HOM05D000250 ORTHO05D002477 3.8e-07 57.0 38 73.7
C02p04900 Brassica napus HOM05D000250 ORTHO05D002477 3.8e-07 57.0 38 73.7
Carub.0006s0966 Capsella rubella HOM05D000250 ORTHO05D002477 3.8e-07 57.0 38 73.7
Carub.0006s0968 Capsella rubella HOM05D000250 ORTHO05D002477 3.8e-07 57.0 38 73.7
CAN.G287.9 Capsicum annuum HOM05D000250 ORTHO05D002477 3.8e-07 57.0 39 74.4
Migut.E01796 Erythranthe guttata HOM05D000250 ORTHO05D002477 3.8e-07 57.0 39 79.5
Thhalv10013628m.g Eutrema salsugineum HOM05D000250 ORTHO05D002477 3.8e-07 57.0 38 73.7
DCAR_025504 Daucus carota HOM05D000250 ORTHO05D010805 4.9e-07 56.6 39 82.1
Gohir.D13G189600 Gossypium hirsutum HOM05D000250 ORTHO05D002477 4.9e-07 56.6 39 76.9
Gorai.013G215200 Gossypium raimondii HOM05D000250 ORTHO05D002477 4.9e-07 56.6 39 76.9
Hma1.2p1_0000F.1_g000210 Hydrangea macrophylla HOM05D000250 ORTHO05D002477 4.9e-07 56.6 39 76.9
TWI32G0439 Tripterygium wilfordii HOM05D000250 ORTHO05D002477 4.9e-07 56.6 39 76.9
CSS0003560 Camellia sinensis var. sinensis HOM05D000250 ORTHO05D002477 6.4e-07 56.2 39 79.5
CSS0010059 Camellia sinensis var. sinensis HOM05D000250 ORTHO05D002477 6.4e-07 56.2 39 79.5
Thhalv10022698m.g Eutrema salsugineum HOM05D000250 ORTHO05D002477 6.4e-07 56.2 38 73.7
Sabra06G0197700 Salix brachista HOM05D000250 ORTHO05D002477 6.4e-07 56.2 39 79.5
AUR62012405 Chenopodium quinoa HOM05D000250 ORTHO05D002477 8.4e-07 55.8 39 74.4
AUR62031501 Chenopodium quinoa HOM05D000250 ORTHO05D002477 8.4e-07 55.8 39 74.4
vmacro05183 Vaccinium macrocarpon HOM05D000250 ORTHO05D002477 8.4e-07 55.8 38 73.7
A02p00880 Brassica napus HOM05D000250 ORTHO05D002477 1.1e-06 55.5 38 71.1
BraA02t05071Z Brassica rapa HOM05D000250 ORTHO05D002477 1.1e-06 55.5 38 71.1
Sopen06g024540 Solanum pennellii HOM05D000250 ORTHO05D002477 1.1e-06 55.5 39 74.4
PGSC0003DMG400020476 Solanum tuberosum HOM05D000250 ORTHO05D002477 1.1e-06 55.5 39 74.4
TWI63G0460 Tripterygium wilfordii HOM05D000250 ORTHO05D002477 1.1e-06 55.5 39 74.4
MSTRG.9433 Avicennia marina HOM05D000250 ORTHO05D002477 1.4e-06 55.1 39 79.5
EL10Ac2g04241 Beta vulgaris HOM05D000250 ORTHO05D002477 1.9e-06 54.7 39 74.4
GSVIVG01017308001 Vitis vinifera HOM05D000250 ORTHO05D002477 1.9e-06 54.7 39 76.9
C09p65680 Brassica napus HOM05D000250 ORTHO05D002477 2.4e-06 54.3 38 71.1
ECA246G2439 Erigeron canadensis HOM05D000250 ORTHO05D002477 2.4e-06 54.3 37 81.1
MBI01_g27634_MAGBIO Magnolia biondii HOM05D000250 ORTHO05D002477 2.4e-06 54.3 39 79.5
Prupe.1G479900 Prunus persica HOM05D000250 ORTHO05D002477 2.4e-06 54.3 38 76.3
Actinidia15675 Actinidia chinensis HOM05D000250 ORTHO05D002477 3.2e-06 53.9 39 76.9
MSTRG.26002 Avicennia marina HOM05D000250 ORTHO05D002477 3.2e-06 53.9 39 76.9
BcaB01g04700 Brassica carinata HOM05D000250 ORTHO05D002477 3.2e-06 53.9 38 71.1
CSS0035394 Camellia sinensis var. sinensis HOM05D000250 ORTHO05D002477 3.2e-06 53.9 39 76.9
CSS0035699 Camellia sinensis var. sinensis HOM05D000250 ORTHO05D002477 3.2e-06 53.9 39 76.9
Dinv38109 Davidia involucrata HOM05D000250 ORTHO05D002477 3.2e-06 53.9 39 76.9
Eucgr.C01749 Eucalyptus grandis HOM05D000250 ORTHO05D002477 3.2e-06 53.9 39 71.8
Eucgr.C02784 Eucalyptus grandis HOM05D000250 ORTHO05D002477 3.2e-06 53.9 39 74.4
TAR625G0780 Trochodendron aralioides HOM05D000250 ORTHO05D002477 3.2e-06 53.9 39 74.4
BolC2t06448H Brassica oleracea HOM05D000250 ORTHO05D002477 4.2e-06 53.5 38 68.4
Nitab4.5_0002007g0020 Nicotiana tabacum HOM05D000250 ORTHO05D002477 4.2e-06 53.5 39 74.4
Thecc.06G021000 Theobroma cacao HOM05D000250 ORTHO05D002477 4.2e-06 53.5 38 73.7
MD08G1154600 Malus domestica HOM05D000250 ORTHO05D002477 5.4e-06 53.1 38 73.7
MD15G1124400 Malus domestica HOM05D000250 ORTHO05D002477 5.4e-06 53.1 38 73.7
BcaB05g23836 Brassica carinata HOM05D000250 ORTHO05D002477 7.1e-06 52.8 38 71.1
A10p26530 Brassica napus HOM05D000250 ORTHO05D002477 7.1e-06 52.8 38 68.4
C03p05630 Brassica napus HOM05D000250 ORTHO05D002477 7.1e-06 52.8 38 68.4
BraA10t44710Z Brassica rapa HOM05D000250 ORTHO05D002477 7.1e-06 52.8 38 68.4
Rhsim08G0214400 Rhododendron simsii HOM05D000250 ORTHO05D002477 7.1e-06 52.8 39 74.4
Ah.10g035910 Amaranthus hybridus HOM05D000250 ORTHO05D002477 9.3e-06 52.4 39 71.8
Duzib160G0464 Durio zibethinus HOM05D000250 ORTHO05D002477 9.3e-06 52.4 38 71.1
Nn6g35411 Nelumbo nucifera HOM05D000250 ORTHO05D002477 9.3e-06 52.4 39 71.8
TWI18G0991 Tripterygium wilfordii HOM05D000250 ORTHO05D002477 9.3e-06 52.4 39 76.9
VMungo1309G1007 Vigna mungo HOM05D000250 ORTHO05D002477 9.3e-06 52.4 39 79.5


User provided reference genes

Program Settings