Gene: Potri.018G028600

General Information

Structural Information

  • Species Populus trichocarpa
  • Gene Identifier Potri.018G028600
  • Transcript Identifier Potri.018G028600.1
  • Gene Type Coding gene
  • Location Chr18 : 2111946-2116458 : positive

Gene Family Information

  • ID HOM05D000250
  • #Genes/#Species 1697/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • id Potri.018G028600.v4.1
  • pacid 42800476
  • synonym POPTR_0018s01620

Descriptions

  • Description K13182 - ATP-dependent RNA helicase DDX39 [EC:3.6.4.13] (DDX39)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009555
ISO
PLAZA Integrative Orthologypollen development Os01g0550000
GO:0046686
ISO
PLAZA Integrative Orthologyresponse to cadmium ion AT5G11170
GO:0048653
ISO
PLAZA Integrative Orthologyanther development Os01g0550000

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
InterPronucleic acid binding
GO:0005524
IEA
InterProATP binding
GO:0016887
ISO
PLAZA Integrative OrthologyATP hydrolysis activity AT5G11200
GO:0003690
ISO
PLAZA Integrative Orthologydouble-stranded DNA binding AT5G11200
GO:0003697
ISO
PLAZA Integrative Orthologysingle-stranded DNA binding AT5G11200
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT5G11200
GO:0003724
ISO
PLAZA Integrative OrthologyRNA helicase activity AT5G11200
GO:0003725
ISO
PLAZA Integrative Orthologydouble-stranded RNA binding AT5G11200
GO:0003727
ISO
PLAZA Integrative Orthologysingle-stranded RNA binding AT5G11170
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT5G11200

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005730
ISO
PLAZA Integrative Orthologynucleolus AT5G11170
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT5G11200
GO:0009506
ISO
PLAZA Integrative Orthologyplasmodesma AT5G11170

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR014001 Helicase superfamily 1/2, ATP-binding domain
IPR001650 Helicase, C-terminal
IPR011545 DEAD/DEAH box helicase domain
Mapman id Description
16.10.1.3 RNA processing.messenger ribonucleoparticle (mRNP) export.TREX/THO mRNP trafficking complex.helicase (UAP56)
16.2.7.1.1 RNA processing.pre-mRNA splicing.spliceosome assembly and disassembly.RNA helicase activities.RNA helicase (Sub2)