Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj8C49G2 Lonicera japonica HOM05D002705 ORTHO05D004955 0.0e+00 2484.1 1308 100.0
Actinidia13623 Actinidia chinensis HOM05D002705 ORTHO05D004955 0.0e+00 1488.4 1331 62.1
Dinv34540 Davidia involucrata HOM05D002705 ORTHO05D004955 0.0e+00 1456.8 1332 61.0
DCAR_014643 Daucus carota HOM05D002705 ORTHO05D004955 0.0e+00 1361.7 1398 56.5
Cc00_g24340 Coffea canephora HOM05D002705 ORTHO05D004955 0.0e+00 1333.5 1343 57.3
Rhsim03G0158700 Rhododendron simsii HOM05D002705 ORTHO05D004955 0.0e+00 1319.7 1334 57.4
TAR636G2282 Trochodendron aralioides HOM05D002705 ORTHO05D004955 0.0e+00 1318.9 1325 57.2
Cfa013602 Carpinus fangiana HOM05D002705 ORTHO05D004955 0.0e+00 1315.8 1342 56.3
CiPaw.07G183200 Carya illinoinensis HOM05D002705 ORTHO05D004955 0.0e+00 1307.7 1100 63.5
ECA232G4016 Erigeron canadensis HOM05D002705 ORTHO05D004955 0.0e+00 1296.6 1342 56.6
QL09p027408 Quercus lobata HOM05D002705 ORTHO05D004955 0.0e+00 1295.8 1405 54.0
Migut.F01210 Erythranthe guttata HOM05D002705 ORTHO05D004955 0.0e+00 1295.4 1345 56.7
Sopen03g024730 Solanum pennellii HOM05D002705 ORTHO05D004955 0.0e+00 1285.4 1381 54.7
Potri.012G114100 Populus trichocarpa HOM05D002705 ORTHO05D004955 0.0e+00 1285.0 1103 63.6
vmacro06848 Vaccinium macrocarpon HOM05D002705 ORTHO05D004955 0.0e+00 1281.5 1300 57.3
HanXRQChr15g0493601 Helianthus annuus HOM05D002705 ORTHO05D004955 0.0e+00 1280.8 1338 56.6
TWI39G0103 Tripterygium wilfordii HOM05D002705 ORTHO05D004955 0.0e+00 1277.7 1325 54.7
GSVIVG01013853001 Vitis vinifera HOM05D002705 ORTHO05D004955 0.0e+00 1273.8 977 68.5
Haze_22224 Corylus avellana HOM05D002705 ORTHO05D004955 0.0e+00 1270.4 1334 55.5
Prupe.2G270600 Prunus persica HOM05D002705 ORTHO05D004955 0.0e+00 1269.2 1334 55.1
Atru.chr6.1980 Acer truncatum HOM05D002705 ORTHO05D004955 0.0e+00 1268.4 1333 53.9
Atru.chr6.2006 Acer truncatum HOM05D002705 ORTHO05D004955 0.0e+00 1268.1 1333 53.9
Ciclev10033740m.g Citrus clementina HOM05D002705 ORTHO05D004955 0.0e+00 1263.4 1336 53.6
Sabra12G0083000 Salix brachista HOM05D002705 ORTHO05D004955 0.0e+00 1257.7 1124 62.4
Nn1g00769 Nelumbo nucifera HOM05D002705 ORTHO05D004955 0.0e+00 1255.0 1361 53.7
SGA_v2.0_scaffold352G49687 Striga asiatica HOM05D002705 ORTHO05D004955 0.0e+00 1246.9 1361 54.8
RcHm_v2.0_Chr1g0373301 Rosa chinensis HOM05D002705 ORTHO05D004955 0.0e+00 1243.8 1094 62.1
Lsat_1_v5_gn_0_9880 Lactuca sativa HOM05D002705 ORTHO05D004955 0.0e+00 1242.3 1342 55.3
Gorai.006G273800 Gossypium raimondii HOM05D002705 ORTHO05D004955 0.0e+00 1239.9 1097 61.0
Thecc.03G145700 Theobroma cacao HOM05D002705 ORTHO05D004955 0.0e+00 1238.8 1054 62.7
FvH4_7g26710 Fragaria vesca HOM05D002705 ORTHO05D004955 0.0e+00 1232.6 1094 61.1
Aqoxy7G00864 Aquilegia oxysepala HOM05D002705 ORTHO05D004955 0.0e+00 1228.8 1339 53.5
Gohir.D09G249500 Gossypium hirsutum HOM05D002705 ORTHO05D004955 0.0e+00 1228.8 1097 60.8
FAN03G2179 Fragaria x ananassa HOM05D002705 ORTHO05D004955 0.0e+00 1226.8 1101 61.5
Glyma.20G198400 Glycine max HOM05D002705 ORTHO05D004955 0.0e+00 1226.8 1082 60.9
FAN06G0843 Fragaria x ananassa HOM05D002705 ORTHO05D004955 0.0e+00 1218.0 1101 60.7
Manes.14G040900 Manihot esculenta HOM05D002705 ORTHO05D004955 0.0e+00 1217.2 926 69.2
SalBow2G1886 Salvia bowleyana HOM05D002705 ORTHO05D004955 0.0e+00 1204.1 1375 53.1
CsaV3_5G005160 Cucumis sativus L. HOM05D002705 ORTHO05D004955 0.0e+00 1198.7 1108 59.5
Lj5g0005183 Lotus japonicus HOM05D002705 ORTHO05D004955 0.0e+00 1198.7 1105 59.6
MELO3C005443.2 Cucumis melo HOM05D002705 ORTHO05D004955 0.0e+00 1198.0 1096 59.7
Gohir.A09G248500 Gossypium hirsutum HOM05D002705 ORTHO05D004955 0.0e+00 1198.0 1099 59.3
Sed0003657 Sechium edule HOM05D002705 ORTHO05D004955 0.0e+00 1192.2 1098 59.4
Medtr1g072800 Medicago truncatula HOM05D002705 ORTHO05D004955 0.0e+00 1188.7 1350 51.9
TPR.G18561 Trifolium pratense HOM05D002705 ORTHO05D004955 0.0e+00 1185.6 1098 58.9
ClCG01G004930 Citrullus lanatus HOM05D002705 ORTHO05D004955 0.0e+00 1185.2 1120 58.8
Lalb_Chr06g0169611 Lupinus albus HOM05D002705 ORTHO05D004955 0.0e+00 1182.9 1107 58.4
Nitab4.5_0010058g0010 Nicotiana tabacum HOM05D002705 ORTHO05D004955 0.0e+00 1181.8 1374 52.0
PSO675G1384 Papaver somniferum HOM05D002705 ORTHO05D004955 0.0e+00 1181.8 980 65.4
Psat6g140240 Pisum sativum HOM05D002705 ORTHO05D004955 0.0e+00 1179.9 1085 59.4
PGR142G4199 Punica granatum HOM05D002705 ORTHO05D004955 0.0e+00 1176.0 1327 51.6
Eucgr.K00116 Eucalyptus grandis HOM05D002705 ORTHO05D004955 0.0e+00 1167.1 977 62.0
Aa31LG7G10510 Aethionema arabicum HOM05D002705 ORTHO05D004955 0.0e+00 1162.1 1097 57.4
Carub.0007s1591 Capsella rubella HOM05D002705 ORTHO05D004955 0.0e+00 1158.3 1101 58.1
THA.LOC104825051 Tarenaya hassleriana HOM05D002705 ORTHO05D004955 0.0e+00 1156.7 1113 56.9
AL7G28030 Arabidopsis lyrata HOM05D002705 ORTHO05D004955 0.0e+00 1156.0 1105 57.9
AT4G25120 Arabidopsis thaliana HOM05D002705 ORTHO05D004955 0.0e+00 1153.3 1101 57.7
MD07G1244800 Malus domestica HOM05D002705 ORTHO05D004955 0.0e+00 1151.0 1092 58.5
BcaC06g32837 Brassica carinata HOM05D002705 ORTHO05D004955 0.0e+00 1150.2 1121 57.5
COL.COLO4_37311 Corchorus olitorius HOM05D002705 ORTHO05D004955 0.0e+00 1149.8 1098 57.9
Thhalv10024258m.g Eutrema salsugineum HOM05D002705 ORTHO05D004955 0.0e+00 1148.3 1104 57.4
Hma1.2p1_2119F.1_g314370 Hydrangea macrophylla HOM05D002705 ORTHO05D004955 0.0e+00 1140.6 823 72.4
Phvul.L001885 Phaseolus vulgaris HOM05D002705 ORTHO05D004955 0.0e+00 1135.2 1035 60.5
Oeu044165.1 Olea europaea HOM05D002705 ORTHO05D004955 0.0e+00 1125.2 1048 61.1
FAN01G0508 Fragaria x ananassa HOM05D002705 ORTHO05D004955 0.0e+00 1122.1 1106 57.6
Sp7g23120 Schrenkiella parvula HOM05D002705 ORTHO05D004955 0.0e+00 1118.2 1005 59.8
FAN10G0038 Fragaria x ananassa HOM05D002705 ORTHO05D004955 0.0e+00 1115.9 1170 54.7
EL10As1g23078 Beta vulgaris HOM05D002705 ORTHO05D004955 0.0e+00 1100.5 1119 54.7
MD07G1243100 Malus domestica HOM05D002705 ORTHO05D004955 0.0e+00 1100.5 920 64.1
MSTRG.8400 Avicennia marina HOM05D002705 ORTHO05D004955 0.0e+00 1099.3 872 67.4
Nitab4.5_0000103g0340 Nicotiana tabacum HOM05D002705 ORTHO05D004955 0.0e+00 1090.5 878 66.1
Solyc03g093850.2 Solanum lycopersicum HOM05D002705 ORTHO05D004955 0.0e+00 1086.2 1108 57.0
BolC7t45891H Brassica oleracea HOM05D002705 ORTHO05D004955 0.0e+00 1083.2 1147 54.4
A03p55770 Brassica napus HOM05D002705 ORTHO05D004955 0.0e+00 1081.2 1160 53.9
Os07g0492100 Oryza sativa ssp. japonica HOM05D002705 ORTHO05D004955 0.0e+00 1079.7 1013 57.8
C07p54050 Brassica napus HOM05D002705 ORTHO05D004955 0.0e+00 1079.3 1137 54.6
Ah.02g115400 Amaranthus hybridus HOM05D002705 ORTHO05D004955 1.1e-310 1070.5 1096 54.4
BraA03t14645Z Brassica rapa HOM05D002705 ORTHO05D004955 1.1e-310 1070.5 1168 53.3
ATR0665G329 Amborella trichopoda HOM05D002705 ORTHO05D004955 9.8e-309 1063.9 1142 53.8
MD07G1245700 Malus domestica HOM05D002705 ORTHO05D004955 2.9e-305 1052.4 869 64.3
Cpa.g.sc13.232 Carica papaya HOM05D002705 ORTHO05D004955 2.9e-297 1025.8 824 65.9
MD07G1243600 Malus domestica HOM05D002705 ORTHO05D004955 4.4e-277 958.7 1091 52.2
CANSAT56G1220 Cannabis sativa HOM05D002705 ORTHO05D004955 1.3e-273 947.2 769 65.7
HPP92_003517 Vanilla planifolia HOM05D002705 ORTHO05D004955 1.2e-269 934.1 901 56.7
arahy.Tifrunner.gnm1.ann1.WYM0Y2 Arachis hypogaea HOM05D002705 ORTHO05D004955 3.4e-261 906.0 756 63.6
arahy.Tifrunner.gnm1.ann1.ZG0SUW Arachis hypogaea HOM05D002705 ORTHO05D004955 4.4e-261 905.6 754 63.5
Peaxi162Scf00073g01729 Petunia axillaris HOM05D002705 ORTHO05D004955 7.1e-259 898.3 594 76.8
unitig_578.g16613 Utricularia gibba HOM05D002705 ORTHO05D004955 6.6e-257 891.7 1080 49.4
MD07G1244300 Malus domestica HOM05D002705 ORTHO05D004955 7.3e-256 888.3 796 62.3
Mapoly0067s0049 Marchantia polymorpha HOM05D002705 ORTHO05D004955 1.1e-246 857.8 1078 46.3
AagrBONN_evm.TU.Sc2ySwM_117.709 Anthoceros agrestis HOM05D002705 ORTHO05D004955 9.6e-240 834.7 1089 44.8
Pp3c1_29170 Physcomitrium patens HOM05D002705 ORTHO05D004955 9.6e-240 834.7 1019 46.2
MD07G1241600 Malus domestica HOM05D002705 ORTHO05D004955 1.5e-232 810.8 693 62.8
Hma1.2p1_2119F.1_g314360 Hydrangea macrophylla HOM05D002705 ORTHO05D004955 4.8e-231 805.8 1125 49.0
CARHR232510 Cardamine hirsuta HOM05D002705 ORTHO05D004955 6.1e-226 788.9 678 61.9
AUR62042388 Chenopodium quinoa HOM05D002705 ORTHO05D004955 3.9e-225 786.2 1072 44.8
SMO263G0015 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 1.5e-224 784.3 925 47.2
SMO118G0423 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 4.8e-215 752.7 925 46.5
CSS0042603 Camellia sinensis var. sinensis HOM05D002705 ORTHO05D004955 2.3e-201 707.2 795 54.0
Ca_09785_v3 Cicer arietinum L. HOM05D002705 ORTHO05D004955 3.2e-195 686.8 619 60.1
Sc11g0004220 Simmondsia chinensis HOM05D002705 ORTHO05D004955 1.5e-192 677.9 485 69.7
Nn1g00770 Nelumbo nucifera HOM05D002705 ORTHO05D004955 6.6e-180 636.0 573 60.9
CAN.G408.1 Capsicum annuum HOM05D002705 ORTHO05D004955 1.1e-174 618.6 415 74.9
AagrBONN_evm.TU.Sc2ySwM_340.578 Anthoceros agrestis HOM05D002705 ORTHO05D004955 1.4e-153 548.5 816 40.3
CAN.G1654.1 Capsicum annuum HOM05D002705 ORTHO05D004955 2.4e-145 521.2 421 65.3
HPP92_027816 Vanilla planifolia HOM05D002705 ORTHO05D004955 1.6e-141 508.4 805 41.2
Manes.14G040200 Manihot esculenta HOM05D002705 ORTHO05D004955 4.9e-135 486.9 437 61.1
CAN.G1406.2 Capsicum annuum HOM05D002705 ORTHO05D004955 3.2e-134 484.2 348 71.0
MD07G1241700 Malus domestica HOM05D002705 ORTHO05D004955 5.0e-103 380.6 389 56.3
FAN05G3181 Fragaria x ananassa HOM05D002705 ORTHO05D004955 9.1e-97 359.8 361 57.3
CBR_g55304 Chara braunii HOM05D002705 ORTHO05D004955 7.2e-86 323.6 374 45.5
Hma1.2p1_2119F.1_g314380 Hydrangea macrophylla HOM05D002705 ORTHO05D004955 4.4e-67 261.2 227 58.1
SMO118G0116 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 2.2e-66 258.8 522 35.2
CAN.G1559.4 Capsicum annuum HOM05D002705 ORTHO05D004955 2.3e-63 248.8 384 43.0
CAN.G1406.1 Capsicum annuum HOM05D002705 ORTHO05D004955 3.1e-60 238.4 231 54.5
Pp3s32_280 Physcomitrium patens HOM05D020685 ORTHO05D022318 7.5e-59 233.8 656 30.2
FAN01G1045 Fragaria x ananassa HOM05D002705 ORTHO05D004955 1.7e-58 232.6 286 50.3
CAN.G1654.2 Capsicum annuum HOM05D002705 ORTHO05D004955 3.2e-57 228.4 165 67.9
MD07G1245200 Malus domestica HOM05D002705 ORTHO05D004955 1.6e-56 226.1 165 69.7
Cpa.g.sc13.234 Carica papaya HOM05D002705 ORTHO05D004955 1.2e-53 216.5 267 49.1
Solyc03g093840.3 Solanum lycopersicum HOM05D002705 ORTHO05D004955 1.9e-49 202.6 265 45.7
FAN17G2187 Fragaria x ananassa HOM05D002705 ORTHO05D004955 2.4e-49 202.2 274 48.5
Ca_09786_v3 Cicer arietinum L. HOM05D002705 ORTHO05D004955 1.1e-46 193.4 279 42.7
SEGI_07874 Sequoiadendron giganteum HOM05D002705 ORTHO05D004955 2.9e-42 178.7 293 39.2
Mapoly0020s0153 Marchantia polymorpha HOM05D002705 ORTHO05D004955 8.6e-39 167.2 681 26.4
SHI35079 Sapria himalayana HOM05D002705 ORTHO05D000001 1.5e-38 166.4 238 43.3
MCO05G634 Micromonas commoda HOM05D002705 ORTHO05D004955 1.9e-38 166.0 677 25.7
Peaxi162Scf00073g01719 Petunia axillaris HOM05D002705 ORTHO05D004955 3.3e-38 165.2 130 68.5
AagrBONN_evm.TU.Sc2ySwM_368.2221 Anthoceros agrestis HOM05D002705 ORTHO05D004955 4.3e-38 164.9 710 24.8
SMO118G0216 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 5.6e-38 164.5 266 39.1
Peaxi162Scf00073g01730 Petunia axillaris HOM05D002705 ORTHO05D004955 9.6e-38 163.7 513 34.1
Pp3s70_120 Physcomitrium patens HOM05D002705 ORTHO05D004955 9.9e-35 153.7 627 25.7
Cfa026800 Carpinus fangiana HOM05D002705 ORTHO05D004955 1.3e-34 153.3 671 25.2
Sc11g0004230 Simmondsia chinensis HOM05D002705 ORTHO05D004955 3.8e-34 151.8 173 48.6
AagrBONN_evm.TU.Sc2ySwM_362.2714 Anthoceros agrestis HOM05D002705 ORTHO05D004955 1.1e-33 150.2 810 23.5
SEGI_13522 Sequoiadendron giganteum HOM05D002705 ORTHO05D004955 1.1e-33 150.2 914 23.2
SMO222G0004 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 4.2e-33 148.3 157 49.7
SEGI_05624 Sequoiadendron giganteum HOM05D002705 ORTHO05D004955 4.6e-32 144.8 232 39.7
CDE06G1177 Ceratophyllum demersum HOM05D002705 ORTHO05D004955 8.7e-31 140.6 212 39.6
VMungo0720G0654 Vigna mungo HOM05D002705 ORTHO05D004955 7.6e-27 127.5 114 64.9
CBR_g46888 Chara braunii HOM05D002705 ORTHO05D004955 9.3e-25 120.6 134 51.5
CBR_g22322 Chara braunii HOM05D000019 ORTHO05D000002 1.2e-24 120.2 368 29.3
MD07G1244100 Malus domestica HOM05D002705 ORTHO05D004955 1.6e-24 119.8 72 77.8
Hund10671 Selenicereus undatus HOM05D002705 ORTHO05D004955 6.0e-24 117.9 83 66.3
SEGI_26843 Sequoiadendron giganteum HOM05D002705 ORTHO05D004955 1.1e-22 113.6 127 51.2
SMO119G0107 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 7.4e-22 110.9 564 23.4
PRCOL_00004767 Prasinoderma coloniale HOM05D002705 ORTHO05D004955 1.6e-21 109.8 729 23.6
ATR0789G167 Amborella trichopoda HOM05D002705 ORTHO05D004955 9.0e-20 104.0 284 26.1
CBR_g55305 Chara braunii HOM05D002705 ORTHO05D004955 1.2e-19 103.6 123 43.1
Cre07.g343333 Chlamydomonas reinhardtii HOM05D002705 ORTHO05D004955 2.9e-18 99.0 261 28.4
SEGI_07071 Sequoiadendron giganteum HOM05D002705 ORTHO05D004955 2.4e-17 95.9 536 25.9
Lsat_1_v5_gn_5_183700 Lactuca sativa HOM05D002705 ORTHO05D021366 2.1e-13 82.8 55 76.4
MD07G1244200 Malus domestica HOM05D002705 ORTHO05D004955 8.2e-13 80.9 202 30.7
Lsat_1_v5_gn_8_47661 Lactuca sativa HOM05D002705 ORTHO05D004955 1.8e-12 79.7 132 42.4
Medtr0675s0010 Medicago truncatula HOM05D002705 ORTHO05D004955 4.5e-11 75.1 656 24.2
SMO119G0278 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 5.8e-11 74.7 87 43.7
Cre07.g314400 Chlamydomonas reinhardtii HOM05D002705 ORTHO05D004955 7.6e-11 74.3 129 34.1
Lsat_1_v5_gn_5_52420 Lactuca sativa HOM05D002705 ORTHO05D004955 4.9e-10 71.6 109 43.1
Lsat_1_v5_gn_9_1780 Lactuca sativa HOM05D002705 ORTHO05D004955 7.1e-09 67.8 92 46.7
CDE06G2589 Ceratophyllum demersum HOM05D002705 ORTHO05D004955 2.5e-06 59.3 138 36.2
FAN03G1556 Fragaria x ananassa HOM05D002001 ORTHO05D004100 5.7e-06 58.2 183 31.1
FvH4_3g31690 Fragaria vesca HOM05D000769 ORTHO05D000598 9.7e-06 57.4 42 61.9


User provided reference genes

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