Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj8C169T22 Lonicera japonica HOM05D003917 ORTHO05D005104 4.7e-106 387.9 199 100.0
GSVIVG01037650001 Vitis vinifera HOM05D003917 ORTHO05D005104 1.0e-60 237.3 206 64.1
Nitab4.5_0004829g0030 Nicotiana tabacum HOM05D003917 ORTHO05D005104 3.9e-60 235.3 202 65.3
Sc16g0006040 Simmondsia chinensis HOM05D003917 ORTHO05D005104 8.8e-60 234.2 204 64.2
Peaxi162Scf00834g00044 Petunia axillaris HOM05D003917 ORTHO05D005104 1.1e-59 233.8 199 66.3
TAR626G1684 Trochodendron aralioides HOM05D003917 ORTHO05D005104 1.1e-59 233.8 205 63.9
ECA240G3908 Erigeron canadensis HOM05D003917 ORTHO05D005104 2.6e-59 232.6 206 63.1
EL10Ac4g07805 Beta vulgaris HOM05D003917 ORTHO05D005104 3.3e-59 232.3 198 64.6
Ca_01713_v3 Cicer arietinum L. HOM05D003917 ORTHO05D005104 3.3e-59 232.3 204 62.3
CSS0021043 Camellia sinensis var. sinensis HOM05D003917 ORTHO05D005104 4.4e-59 231.9 206 63.1
RhsimUnG0250500 Rhododendron simsii HOM05D003917 ORTHO05D005104 5.7e-59 231.5 207 61.8
CiPaw.12G129800 Carya illinoinensis HOM05D003917 ORTHO05D005104 1.3e-58 230.3 206 61.2
Duzib213G0954 Durio zibethinus HOM05D003917 ORTHO05D005104 2.8e-58 229.2 202 63.9
PGR083G1099 Punica granatum HOM05D003917 ORTHO05D005104 2.8e-58 229.2 202 62.9
QL08p010140 Quercus lobata HOM05D003917 ORTHO05D005104 3.7e-58 228.8 202 61.9
MD03G1200800 Malus domestica HOM05D003917 ORTHO05D005104 4.8e-58 228.4 206 62.6
Hma1.2p1_0673F.1_g201365 Hydrangea macrophylla HOM05D003917 ORTHO05D005104 6.3e-58 228.0 204 62.7
Hma1.2p1_0673F.1_g201370 Hydrangea macrophylla HOM05D003917 ORTHO05D005104 6.3e-58 228.0 204 62.7
Glyma.18G096900 Glycine max HOM05D003917 ORTHO05D005104 8.2e-58 227.6 204 60.3
Gohir.D13G142900 Gossypium hirsutum HOM05D003917 ORTHO05D005104 8.2e-58 227.6 201 63.2
HanXRQChr03g0076521 Helianthus annuus HOM05D003917 ORTHO05D005104 1.1e-57 227.3 204 62.7
Cfa020343 Carpinus fangiana HOM05D003917 ORTHO05D005104 1.8e-57 226.5 207 61.4
MD11G1217800 Malus domestica HOM05D003917 ORTHO05D005104 2.4e-57 226.1 206 62.6
Prupe.4G213500 Prunus persica HOM05D003917 ORTHO05D005104 2.4e-57 226.1 206 61.7
Thecc.07G036800 Theobroma cacao HOM05D003917 ORTHO05D005104 2.4e-57 226.1 203 63.5
VMungo0647G2080 Vigna mungo HOM05D003917 ORTHO05D005104 2.4e-57 226.1 205 61.5
CsaV3_3G005080 Cucumis sativus L. HOM05D003917 ORTHO05D005104 3.1e-57 225.7 203 63.1
Gohir.A13G138100 Gossypium hirsutum HOM05D003917 ORTHO05D005104 3.1e-57 225.7 201 62.7
ClCG10G005360 Citrullus lanatus HOM05D003917 ORTHO05D005104 4.1e-57 225.3 203 62.6
Lj6g0025956 Lotus japonicus HOM05D003917 ORTHO05D005104 4.1e-57 225.3 205 60.0
CSS0032620 Camellia sinensis var. sinensis HOM05D003917 ORTHO05D005104 5.3e-57 224.9 206 59.2
Glyma.14G023600 Glycine max HOM05D003917 ORTHO05D005104 5.3e-57 224.9 203 62.6
DCAR_016705 Daucus carota HOM05D003917 ORTHO05D005104 6.9e-57 224.6 205 62.0
Eucgr.L03176 Eucalyptus grandis HOM05D003917 ORTHO05D005104 1.2e-56 223.8 207 60.4
vmacro09714 Vaccinium macrocarpon HOM05D003917 ORTHO05D005104 1.5e-56 223.4 209 59.3
Eucgr.F00763 Eucalyptus grandis HOM05D003917 ORTHO05D005104 2.0e-56 223.0 207 60.4
Psat5g178840 Pisum sativum HOM05D003917 ORTHO05D005104 2.0e-56 223.0 203 60.1
Gorai.013G159800 Gossypium raimondii HOM05D003917 ORTHO05D005104 3.4e-56 222.2 208 61.1
COL.COLO4_09663 Corchorus olitorius HOM05D003917 ORTHO05D005104 4.5e-56 221.9 202 63.4
Ah.06g186000 Amaranthus hybridus HOM05D003917 ORTHO05D005104 5.9e-56 221.5 205 59.5
Migut.H01827 Erythranthe guttata HOM05D003917 ORTHO05D005104 5.9e-56 221.5 203 63.5
FvH4_3g22680 Fragaria vesca HOM05D003917 ORTHO05D005104 5.9e-56 221.5 206 60.7
FAN21G1759 Fragaria x ananassa HOM05D003917 ORTHO05D005104 5.9e-56 221.5 206 60.7
FAN25G1034 Fragaria x ananassa HOM05D003917 ORTHO05D005104 5.9e-56 221.5 206 60.7
AUR62015777 Chenopodium quinoa HOM05D003917 ORTHO05D005104 1.7e-55 219.9 204 61.3
Glyma.08G316200 Glycine max HOM05D003917 ORTHO05D005104 1.7e-55 219.9 204 59.3
Phvul.006G043400 Phaseolus vulgaris HOM05D003917 ORTHO05D005104 1.7e-55 219.9 204 59.8
Hund01991 Selenicereus undatus HOM05D003917 ORTHO05D005104 2.2e-55 219.5 205 60.5
MBI18_g14473_MAGBIO Magnolia biondii HOM05D003917 ORTHO05D005104 2.9e-55 219.2 210 59.5
PSO832G0061 Papaver somniferum HOM05D003917 ORTHO05D005104 2.9e-55 219.2 203 61.1
AUR62020441 Chenopodium quinoa HOM05D003917 ORTHO05D005104 3.8e-55 218.8 206 60.2
Lsat_1_v5_gn_5_3940 Lactuca sativa HOM05D003917 ORTHO05D005104 3.8e-55 218.8 174 66.7
Medtr3g051740 Medicago truncatula HOM05D003917 ORTHO05D005104 3.8e-55 218.8 204 60.3
Solyc10g006290.3 Solanum lycopersicum HOM05D003917 ORTHO05D005104 3.8e-55 218.8 201 61.2
Sopen10g002240 Solanum pennellii HOM05D003917 ORTHO05D005104 3.8e-55 218.8 201 60.7
ECA246G4209 Erigeron canadensis HOM05D003917 ORTHO05D005104 5.0e-55 218.4 174 67.2
PGSC0003DMG400014388 Solanum tuberosum HOM05D003917 ORTHO05D005104 5.0e-55 218.4 201 61.2
Atru.chr2.3409 Acer truncatum HOM05D003917 ORTHO05D005104 8.5e-55 217.6 207 59.9
VMungo0540G1915 Vigna mungo HOM05D003917 ORTHO05D005104 8.5e-55 217.6 204 59.3
arahy.Tifrunner.gnm1.ann1.YBSA71 Arachis hypogaea HOM05D003917 ORTHO05D005104 1.1e-54 217.2 204 60.8
arahy.Tifrunner.gnm1.ann1.ZCST78 Arachis hypogaea HOM05D003917 ORTHO05D005104 1.1e-54 217.2 204 60.8
Cc05_g13680 Coffea canephora HOM05D003917 ORTHO05D005104 1.1e-54 217.2 203 62.1
CANSAT01G2526 Cannabis sativa HOM05D003917 ORTHO05D005104 1.9e-54 216.5 200 61.5
Lalb_Chr20g0113861 Lupinus albus HOM05D003917 ORTHO05D005104 1.9e-54 216.5 200 60.5
RcHm_v2.0_Chr5g0039491 Rosa chinensis HOM05D003917 ORTHO05D005104 3.2e-54 215.7 206 59.7
MSTRG.14435 Avicennia marina HOM05D003917 ORTHO05D005104 7.2e-54 214.5 197 60.9
HanXRQChr05g0159361 Helianthus annuus HOM05D003917 ORTHO05D005104 7.2e-54 214.5 197 59.9
CAN.G1781.2 Capsicum annuum HOM05D003917 ORTHO05D005104 9.4e-54 214.2 174 65.5
LjContig00272g0007438 Lotus japonicus HOM05D003917 ORTHO05D005104 9.4e-54 214.2 203 59.1
Os07g0516200 Oryza sativa ssp. japonica HOM05D003917 ORTHO05D005104 9.4e-54 214.2 191 63.9
PSO210G5830 Papaver somniferum HOM05D003917 ORTHO05D005104 1.2e-53 213.8 203 60.6
Lalb_Chr15g0081161 Lupinus albus HOM05D003917 ORTHO05D005104 3.6e-53 212.2 206 58.7
SGA_v2.0_scaffold8G04319 Striga asiatica HOM05D003917 ORTHO05D005104 6.1e-53 211.5 203 60.1
Ciclev10009443m.g Citrus clementina HOM05D003917 ORTHO05D005104 7.9e-53 211.1 233 56.7
Dinv22262 Davidia involucrata HOM05D006187 ORTHO05D007621 1.0e-52 210.7 189 61.9
Sed0004226 Sechium edule HOM05D003917 ORTHO05D005104 1.0e-52 210.7 190 62.6
TWI39G1026 Tripterygium wilfordii HOM05D003917 ORTHO05D005104 1.4e-52 210.3 203 59.6
CDE11G0283 Ceratophyllum demersum HOM05D000789 ORTHO05D005104 3.9e-52 208.8 186 61.3
Duzib093G2089 Durio zibethinus HOM05D003917 ORTHO05D005104 5.2e-52 208.4 203 59.6
HPP92_004132 Vanilla planifolia HOM05D003917 ORTHO05D005104 6.7e-52 208.0 205 57.6
Medtr5g092740 Medicago truncatula HOM05D003917 ORTHO05D005104 8.8e-52 207.6 208 58.7
Dinv40754 Davidia involucrata HOM05D003917 ORTHO05D005104 1.5e-51 206.8 201 58.2
TPR.G1217 Trifolium pratense HOM05D003917 ORTHO05D005104 1.5e-51 206.8 200 59.0
Lalb_Chr17g0348491 Lupinus albus HOM05D003917 ORTHO05D005104 2.0e-51 206.5 186 61.8
Psat2g010880 Pisum sativum HOM05D003917 ORTHO05D005104 2.0e-51 206.5 200 59.5
THA.LOC104816925 Tarenaya hassleriana HOM05D003917 ORTHO05D005104 2.6e-51 206.1 207 59.4
Aa31LG8G7200 Aethionema arabicum HOM05D003917 ORTHO05D005104 3.3e-51 205.7 194 60.3
Potri.011G139600 Populus trichocarpa HOM05D003917 ORTHO05D005104 3.3e-51 205.7 207 57.0
Potri.001G435700 Populus trichocarpa HOM05D003917 ORTHO05D005104 5.7e-51 204.9 206 56.3
Carub.0003s2033 Capsella rubella HOM05D003917 ORTHO05D005104 7.4e-51 204.5 194 59.8
Oeu005531.1 Olea europaea HOM05D003917 ORTHO05D005104 1.3e-50 203.8 158 69.6
Nn1g03531 Nelumbo nucifera HOM05D003917 ORTHO05D005104 2.8e-50 202.6 244 51.6
Thhalv10021595m.g Eutrema salsugineum HOM05D003917 ORTHO05D005104 8.2e-50 201.1 194 58.2
Manes.15G071800 Manihot esculenta HOM05D003917 ORTHO05D005104 1.1e-49 200.7 208 56.7
A05p28510 Brassica napus HOM05D003917 ORTHO05D005104 1.4e-49 200.3 189 60.3
MD11G1218500 Malus domestica HOM05D003917 ORTHO05D005104 1.4e-49 200.3 206 56.8
Sp3g18400 Schrenkiella parvula HOM05D003917 ORTHO05D005104 1.4e-49 200.3 174 62.1
CARHR096100 Cardamine hirsuta HOM05D003917 ORTHO05D005104 2.4e-49 199.5 174 61.5
BcaB04g19109 Brassica carinata HOM05D003917 ORTHO05D005104 3.1e-49 199.1 191 58.6
BcaB06g26102 Brassica carinata HOM05D003917 ORTHO05D005104 3.1e-49 199.1 189 60.8
BcaB06g26104 Brassica carinata HOM05D003917 ORTHO05D005104 3.1e-49 199.1 189 60.8
BcaC05g28323 Brassica carinata HOM05D003917 ORTHO05D005104 4.1e-49 198.7 189 59.8
C05p43960 Brassica napus HOM05D003917 ORTHO05D005104 4.1e-49 198.7 189 59.8
BolC5t33114H Brassica oleracea HOM05D003917 ORTHO05D005104 4.1e-49 198.7 189 59.8
Haze_09691 Corylus avellana HOM05D003917 ORTHO05D005104 7.0e-49 198.0 159 67.3
Aqoxy1G03502 Aquilegia oxysepala HOM05D003917 ORTHO05D005104 9.1e-49 197.6 169 65.1
AT3G20390 Arabidopsis thaliana HOM05D003917 ORTHO05D005104 9.1e-49 197.6 194 57.7
A03p41760 Brassica napus HOM05D003917 ORTHO05D005104 9.1e-49 197.6 174 60.9
BraA03t13329Z Brassica rapa HOM05D003917 ORTHO05D005104 9.1e-49 197.6 174 60.9
AL3G34100 Arabidopsis lyrata HOM05D003917 ORTHO05D005104 1.2e-48 197.2 194 57.7
BcaC01g03555 Brassica carinata HOM05D003917 ORTHO05D005104 1.6e-48 196.8 177 61.6
C03p51140 Brassica napus HOM05D003917 ORTHO05D005104 1.6e-48 196.8 174 60.9
QL08p010146 Quercus lobata HOM05D003917 ORTHO05D005104 1.6e-48 196.8 158 65.8
unitig_22.g6623 Utricularia gibba HOM05D001290 ORTHO05D001180 4.5e-48 195.3 166 62.7
unitig_8.g3276 Utricularia gibba HOM05D003917 ORTHO05D005104 4.5e-48 195.3 202 55.4
Actinidia35344 Actinidia chinensis HOM05D006187 ORTHO05D007621 5.9e-48 194.9 186 57.5
Oeu007580.1 Olea europaea HOM05D003917 ORTHO05D005104 5.9e-48 194.9 158 66.5
Zm00001eb322650 Zea mays HOM05D003917 ORTHO05D005104 1.3e-47 193.7 196 57.1
Sabra16G0289800 Salix brachista HOM05D003917 ORTHO05D005104 2.9e-47 192.6 157 64.3
Lj1A872G53 Lonicera japonica HOM05D003917 ORTHO05D005104 5.0e-47 191.8 204 56.9
SMO144G0016 Selaginella moellendorffii HOM05D003917 ORTHO05D005104 6.5e-47 191.4 170 62.4
Sabra11G0125600 Salix brachista HOM05D003917 ORTHO05D005104 8.5e-47 191.0 157 65.0
Nitab4.5_0001393g0140 Nicotiana tabacum HOM05D003917 ORTHO05D005104 2.1e-45 186.4 202 54.0
Solyc07g064600.3 Solanum lycopersicum HOM05D003917 ORTHO05D005104 6.1e-45 184.9 191 52.9
Sopen07g032790 Solanum pennellii HOM05D003917 ORTHO05D005104 8.8e-44 181.0 191 52.4
AagrBONN_evm.TU.Sc2ySwM_117.1972 Anthoceros agrestis HOM05D003917 ORTHO05D005104 3.3e-43 179.1 158 62.7
MELO3C031909.2 Cucumis melo HOM05D003917 ORTHO05D005104 7.5e-43 177.9 179 59.8
BcaB04g20655 Brassica carinata HOM05D003917 ORTHO05D005104 9.7e-43 177.6 209 51.2
PGSC0003DMG400022217 Solanum tuberosum HOM05D003917 ORTHO05D005104 1.3e-42 177.2 189 51.9
Mapoly0108s0009 Marchantia polymorpha HOM05D003917 ORTHO05D005104 2.2e-42 176.4 157 58.6
Pp3c13_21770 Physcomitrium patens HOM05D003917 ORTHO05D005104 2.8e-42 176.0 157 60.5
BraA01t03528Z Brassica rapa HOM05D003917 ORTHO05D005104 3.7e-42 175.6 158 61.4
C01p43730 Brassica napus HOM05D003917 ORTHO05D005104 1.1e-41 174.1 158 60.1
A01p34300 Brassica napus HOM05D003917 ORTHO05D005104 1.4e-41 173.7 158 60.1
BcaC09g48993 Brassica carinata HOM05D003917 ORTHO05D005104 1.8e-41 173.3 197 53.3
BolC1t04332H Brassica oleracea HOM05D003917 ORTHO05D005104 1.8e-41 173.3 205 52.2
FAN11G2833 Fragaria x ananassa HOM05D003917 ORTHO05D005104 1.3e-39 167.2 175 55.4
CiPaw.11G189400 Carya illinoinensis HOM05D003917 ORTHO05D005104 8.5e-39 164.5 206 49.5
Lsat_1_v5_gn_9_93900 Lactuca sativa HOM05D003917 ORTHO05D005104 1.1e-38 164.1 170 54.7
Duzib093G1533 Durio zibethinus HOM05D003917 ORTHO05D005104 9.4e-38 161.0 172 55.8
Duzib093G1470 Durio zibethinus HOM05D003917 ORTHO05D005104 3.6e-37 159.1 172 55.2
A01p34290 Brassica napus HOM05D003917 ORTHO05D005104 2.6e-35 152.9 197 50.3
Glyma.02G291100 Glycine max HOM05D003917 ORTHO05D005104 8.3e-34 147.9 155 56.1
CBR_g32332 Chara braunii HOM05D003917 ORTHO05D005104 9.1e-33 144.4 158 50.0
ClCG10G005350 Citrullus lanatus HOM05D003917 ORTHO05D005104 1.2e-32 144.1 175 49.1
MELO3C025369.2 Cucumis melo HOM05D003917 ORTHO05D005104 2.9e-31 139.4 175 45.7
MCO11G845 Micromonas commoda HOM05D003917 ORTHO05D005104 1.5e-30 137.1 157 49.0
Cre16.g669650 Chlamydomonas reinhardtii HOM05D003917 ORTHO05D005104 7.2e-30 134.8 203 43.8
CsaV3_3G005070 Cucumis sativus L. HOM05D003917 ORTHO05D005104 9.5e-30 134.4 156 47.4
Sed0024585 Sechium edule HOM05D003917 ORTHO05D005104 1.2e-29 134.0 176 47.2
PRCOL_00004025 Prasinoderma coloniale HOM05D003917 ORTHO05D005104 2.8e-29 132.9 158 45.6
Sed0017343 Sechium edule HOM05D003917 ORTHO05D005104 3.0e-28 129.4 156 48.1
Phvul.008G266800 Phaseolus vulgaris HOM05D003917 ORTHO05D005104 8.8e-28 127.9 156 50.0
ATR0776G085 Amborella trichopoda HOM05D003917 ORTHO05D005104 2.2e-26 123.2 135 48.9
BcaC05g28324 Brassica carinata HOM05D000399 ORTHO05D000304 3.7e-26 122.5 127 55.9
ATR0794G030 Amborella trichopoda HOM05D003917 ORTHO05D005104 8.3e-26 121.3 138 47.1
FAN16G0616 Fragaria x ananassa HOM05D003917 ORTHO05D005104 5.4e-25 118.6 100 63.0
FAN16G0676 Fragaria x ananassa HOM05D003917 ORTHO05D005104 1.6e-24 117.1 69 82.6
BcaC01g01693 Brassica carinata HOM05D003917 ORTHO05D005104 2.0e-24 116.7 110 59.1
ATR0794G138 Amborella trichopoda HOM05D003917 ORTHO05D005104 1.7e-23 113.6 136 44.9
BraA01t03527Z Brassica rapa HOM05D003917 ORTHO05D005104 1.9e-22 110.2 147 49.0
Gorai.002G088600 Gossypium raimondii HOM05D003917 ORTHO05D005104 2.5e-22 109.8 68 79.4
Gohir.D01G066600 Gossypium hirsutum HOM05D003917 ORTHO05D005104 9.5e-22 107.8 68 77.9
Oeu042771.1 Olea europaea HOM05D003917 ORTHO05D005104 1.6e-21 107.1 101 60.4
AUR62016539 Chenopodium quinoa HOM05D003917 ORTHO05D024981 8.3e-18 94.7 74 64.9
SGA_v2.0_scaffold698G53480 Striga asiatica HOM05D003917 ORTHO05D024981 7.0e-17 91.7 53 81.1
AUR62006502 Chenopodium quinoa HOM05D003917 ORTHO05D024981 1.6e-16 90.5 53 81.1
SGA_v2.0_scaffold31G12886 Striga asiatica HOM05D003917 ORTHO05D024981 1.6e-16 90.5 53 79.2
C01p43720 Brassica napus HOM05D003917 ORTHO05D005104 7.8e-16 88.2 91 57.1
BolC1t04330H Brassica oleracea HOM05D003917 ORTHO05D005104 1.7e-15 87.0 91 56.0
Oeu021198.1 Olea europaea HOM05D003917 ORTHO05D005104 2.5e-14 83.2 47 80.9
CBR_g3731 Chara braunii HOM05D003917 ORTHO05D028724 2.3e-12 76.6 125 39.2
Pp3s32_520 Physcomitrium patens HOM05D003917 ORTHO05D309786 3.1e-12 76.3 156 33.3
Aa31LG8G10060 Aethionema arabicum HOM05D002406 ORTHO05D007964 4.9e-10 68.9 68 52.9
BolC6t38526H Brassica oleracea HOM05D003917 ORTHO05D001048 1.1e-09 67.8 77 49.4
C05p25410 Brassica napus HOM05D003917 ORTHO05D001048 1.9e-09 67.0 77 49.4
BcaC05g26491 Brassica carinata HOM05D003917 ORTHO05D001048 4.1e-09 65.9 50 70.0
BolC6t39957H Brassica oleracea HOM05D003917 ORTHO05D001048 2.7e-08 63.2 77 46.8
RcHm_v2.0_Chr5g0039481 Rosa chinensis HOM05D003917 ORTHO05D347315 1.1e-06 57.8 31 87.1


User provided reference genes

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