Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj8A581G22 Lonicera japonica HOM05D004619 ORTHO05D005738 0.0e+00 1449.5 721 100.0
CSS0016966 Camellia sinensis var. sinensis HOM05D004619 ORTHO05D005738 0.0e+00 1179.9 722 80.6
CSS0048446 Camellia sinensis var. sinensis HOM05D004619 ORTHO05D005738 0.0e+00 1177.9 722 80.3
Hma1.2p1_0049F.1_g028570 Hydrangea macrophylla HOM05D004619 ORTHO05D005738 0.0e+00 1162.5 723 79.3
Nn8g39783 Nelumbo nucifera HOM05D004619 ORTHO05D005738 0.0e+00 1134.4 726 77.5
GSVIVG01035621001 Vitis vinifera HOM05D004619 ORTHO05D005738 0.0e+00 1127.1 722 76.7
Prupe.1G448000 Prunus persica HOM05D004619 ORTHO05D005738 0.0e+00 1114.0 730 74.7
QL12p041325 Quercus lobata HOM05D004619 ORTHO05D005738 0.0e+00 1106.7 726 75.8
Cfa013367 Carpinus fangiana HOM05D004619 ORTHO05D005738 0.0e+00 1102.8 726 74.8
MD15G1093200 Malus domestica HOM05D004619 ORTHO05D005738 0.0e+00 1100.5 730 74.1
Atru.chr7.2086 Acer truncatum HOM05D004619 ORTHO05D005738 0.0e+00 1100.1 697 76.3
Nitab4.5_0001515g0010 Nicotiana tabacum HOM05D004619 ORTHO05D005738 0.0e+00 1098.6 724 74.7
Nitab4.5_0003794g0010 Nicotiana tabacum HOM05D004619 ORTHO05D005738 0.0e+00 1091.6 724 74.0
HanXRQChr13g0402061 Helianthus annuus HOM05D004619 ORTHO05D005738 0.0e+00 1087.8 723 75.0
Peaxi162Scf00227g00812 Petunia axillaris HOM05D004619 ORTHO05D005738 0.0e+00 1087.4 720 74.2
Thecc.09G045500 Theobroma cacao HOM05D004619 ORTHO05D005738 0.0e+00 1086.2 722 75.6
FAN27G0819 Fragaria x ananassa HOM05D004619 ORTHO05D005738 0.0e+00 1085.5 722 74.1
Lsat_1_v5_gn_6_23120 Lactuca sativa HOM05D004619 ORTHO05D005738 0.0e+00 1084.7 723 74.6
FvH4_2g35520 Fragaria vesca HOM05D004619 ORTHO05D005738 0.0e+00 1083.9 722 74.0
Solyc08g066580.4 Solanum lycopersicum HOM05D004619 ORTHO05D005738 0.0e+00 1083.6 723 73.9
Sopen08g020420 Solanum pennellii HOM05D004619 ORTHO05D005738 0.0e+00 1081.2 723 73.7
CANSAT25G1337 Cannabis sativa HOM05D004619 ORTHO05D005738 0.0e+00 1080.5 731 73.6
Duzib168G0872 Durio zibethinus HOM05D004619 ORTHO05D005738 0.0e+00 1079.7 722 73.8
Eucgr.C00596 Eucalyptus grandis HOM05D004619 ORTHO05D005738 0.0e+00 1079.3 721 73.2
Ciclev10007610m.g Citrus clementina HOM05D004619 ORTHO05D005738 0.0e+00 1078.9 709 74.8
Cc08_g09590 Coffea canephora HOM05D004619 ORTHO05D005738 0.0e+00 1075.5 722 73.5
RcHm_v2.0_Chr6g0306261 Rosa chinensis HOM05D004619 ORTHO05D005738 4.9e-312 1074.3 722 73.7
Lalb_Chr14g0362511 Lupinus albus HOM05D004619 ORTHO05D005738 9.9e-312 1072.8 722 73.0
Gohir.D06G092300 Gossypium hirsutum HOM05D004619 ORTHO05D005738 1.7e-310 1068.9 723 74.3
COL.COLO4_20972 Corchorus olitorius HOM05D004619 ORTHO05D005738 2.9e-310 1068.1 722 74.4
Gorai.010G106300 Gossypium raimondii HOM05D004619 ORTHO05D005738 1.1e-309 1066.2 723 74.3
FAN20G0141 Fragaria x ananassa HOM05D004619 ORTHO05D005738 2.4e-309 1065.1 733 72.4
Rhsim07G0146900 Rhododendron simsii HOM05D004619 ORTHO05D005738 3.5e-308 1061.2 710 74.6
TPR.G24498 Trifolium pratense HOM05D004619 ORTHO05D005738 1.7e-307 1058.9 712 71.9
ECA233G0099 Erigeron canadensis HOM05D004619 ORTHO05D005738 1.5e-306 1055.8 736 71.3
DCAR_004468 Daucus carota HOM05D004619 ORTHO05D005738 1.9e-306 1055.4 721 73.0
Aqoxy7G03899 Aquilegia oxysepala HOM05D004619 ORTHO05D005738 2.5e-306 1055.0 727 72.1
Ca_12754_v3 Cicer arietinum L. HOM05D004619 ORTHO05D005738 3.6e-305 1051.2 712 71.8
MBI01_g18389_MAGBIO Magnolia biondii HOM05D004619 ORTHO05D005738 3.6e-305 1051.2 723 71.5
Medtr1g006690 Medicago truncatula HOM05D004619 ORTHO05D005738 6.8e-304 1047.0 712 71.8
Gohir.A06G092700 Gossypium hirsutum HOM05D004619 ORTHO05D005738 8.9e-304 1046.6 723 73.4
Lj1g0001172 Lotus japonicus HOM05D004619 ORTHO05D005738 1.2e-303 1046.2 712 72.2
arahy.Tifrunner.gnm1.ann1.Z9IJD2 Arachis hypogaea HOM05D004619 ORTHO05D005738 3.4e-303 1044.6 721 71.4
PSO210G5473 Papaver somniferum HOM05D004619 ORTHO05D005738 3.4e-303 1044.6 721 71.0
Glyma.17G193800 Glycine max HOM05D004619 ORTHO05D005738 4.4e-303 1044.3 712 72.9
arahy.Tifrunner.gnm1.ann1.CES4LM Arachis hypogaea HOM05D004619 ORTHO05D005738 1.1e-301 1039.6 721 71.4
PSO210G6185 Papaver somniferum HOM05D004619 ORTHO05D005738 1.1e-301 1039.6 721 70.7
TAR636G2525 Trochodendron aralioides HOM05D004619 ORTHO05D005738 3.5e-300 1034.6 662 77.0
MSTRG.1660 Avicennia marina HOM05D004619 ORTHO05D005738 1.0e-299 1033.1 723 71.5
Migut.E01528 Erythranthe guttata HOM05D004619 ORTHO05D005738 1.5e-298 1029.2 720 70.8
EL10Ac2g04016 Beta vulgaris HOM05D004619 ORTHO05D005738 4.7e-297 1024.2 723 69.2
CAN.G400.8 Capsicum annuum HOM05D004619 ORTHO05D005738 4.7e-297 1024.2 659 75.7
SGA_v2.0_scaffold169G38654 Striga asiatica HOM05D004619 ORTHO05D005738 6.8e-296 1020.4 723 70.4
Sc23g0005210 Simmondsia chinensis HOM05D004619 ORTHO05D005738 2.4e-293 1011.9 704 69.3
CiPaw.07G204000 Carya illinoinensis HOM05D004619 ORTHO05D005738 5.4e-293 1010.7 633 76.9
SalBow1G6937 Salvia bowleyana HOM05D004619 ORTHO05D005738 6.6e-291 1003.8 731 68.8
Sed0007447 Sechium edule HOM05D004619 ORTHO05D005738 1.8e-288 995.7 726 69.8
CsaV3_2G030840 Cucumis sativus L. HOM05D004619 ORTHO05D005738 2.4e-288 995.3 722 68.7
vmacro05371 Vaccinium macrocarpon HOM05D004619 ORTHO05D005738 5.2e-288 994.2 990 56.3
Haze_21890 Corylus avellana HOM05D004619 ORTHO05D005738 8.9e-288 993.4 734 69.2
Actinidia15739 Actinidia chinensis HOM05D004619 ORTHO05D005738 7.6e-287 990.3 722 71.6
Thhalv10024536m.g Eutrema salsugineum HOM05D004619 ORTHO05D005738 1.7e-286 989.2 725 67.7
THA.LOC104803757 Tarenaya hassleriana HOM05D004619 ORTHO05D005738 8.4e-286 986.9 728 68.3
Carub.0007s0758 Capsella rubella HOM05D004619 ORTHO05D005738 2.4e-285 985.3 721 68.1
AT4G32910 Arabidopsis thaliana HOM05D004619 ORTHO05D005738 9.3e-285 983.4 721 67.3
CARHR240910 Cardamine hirsuta HOM05D004619 ORTHO05D005738 1.6e-284 982.6 722 67.5
Manes.16G075300 Manihot esculenta HOM05D004619 ORTHO05D005738 4.6e-284 981.1 728 68.4
BcaC09g52091 Brassica carinata HOM05D004619 ORTHO05D005738 6.6e-283 977.2 725 66.6
C01p05790 Brassica napus HOM05D004619 ORTHO05D005738 1.5e-282 976.1 725 66.6
A01p05370 Brassica napus HOM05D004619 ORTHO05D005738 3.3e-282 974.9 725 66.6
Sp7g30680 Schrenkiella parvula HOM05D004619 ORTHO05D005738 1.3e-281 973.0 725 66.5
AL7G18800 Arabidopsis lyrata HOM05D004619 ORTHO05D005738 3.6e-281 971.5 721 66.7
ClCG08G012210 Citrullus lanatus HOM05D004619 ORTHO05D005738 6.2e-281 970.7 721 67.7
BolC1t00559H Brassica oleracea HOM05D004619 ORTHO05D005738 5.3e-280 967.6 721 66.4
BraA01t00511Z Brassica rapa HOM05D004619 ORTHO05D005738 5.3e-280 967.6 725 66.1
CDE02G4285 Ceratophyllum demersum HOM05D004619 ORTHO05D005738 1.1e-277 959.9 727 65.5
ATR0705G091 Amborella trichopoda HOM05D004619 ORTHO05D005738 1.4e-277 959.5 730 65.3
PGR031G0242 Punica granatum HOM05D004619 ORTHO05D005738 1.2e-276 956.4 713 67.5
Aa31sc131G40 Aethionema arabicum HOM05D004619 ORTHO05D005738 1.7e-275 952.6 738 65.2
Eucgr.C00551 Eucalyptus grandis HOM05D004619 ORTHO05D005738 8.7e-275 950.3 637 72.2
Phvul.001G074000 Phaseolus vulgaris HOM05D004619 ORTHO05D005738 1.8e-272 942.6 649 71.0
Dinv27905 Davidia involucrata HOM05D004619 ORTHO05D005738 3.4e-271 938.3 542 83.4
Hma1.2p1_0049F.1_g028580 Hydrangea macrophylla HOM05D004619 ORTHO05D005738 4.5e-271 937.9 587 78.5
Ah.10g035010 Amaranthus hybridus HOM05D004619 ORTHO05D005738 7.6e-271 937.2 721 64.8
HPP92_005572 Vanilla planifolia HOM05D004619 ORTHO05D005738 2.7e-268 928.7 726 64.2
MELO3C011139.2 Cucumis melo HOM05D004619 ORTHO05D005738 3.5e-268 928.3 729 64.5
Sabra18G0044200 Salix brachista HOM05D004619 ORTHO05D005738 2.3e-267 925.6 630 72.9
AUR62039705 Chenopodium quinoa HOM05D004619 ORTHO05D005738 7.4e-266 920.6 589 74.4
Sabra18G0044100 Salix brachista HOM05D004619 ORTHO05D005738 3.7e-265 918.3 627 72.4
Os01g0746200 Oryza sativa ssp. japonica HOM05D004619 ORTHO05D005738 1.2e-260 903.3 739 61.0
Zm00001eb152980 Zea mays HOM05D004619 ORTHO05D005738 4.6e-260 901.4 732 61.3
Hund19512 Selenicereus undatus HOM05D004619 ORTHO05D005738 1.5e-255 886.3 875 53.8
AUR62009276 Chenopodium quinoa HOM05D004619 ORTHO05D005738 9.7e-250 867.1 727 61.3
vmacro23276 Vaccinium macrocarpon HOM05D004619 ORTHO05D005738 9.7e-250 867.1 984 52.5
Psat6g038280 Pisum sativum HOM05D004619 ORTHO05D005738 2.4e-248 862.4 565 73.3
SHI18685 Sapria himalayana HOM05D004619 ORTHO05D005738 4.1e-224 781.9 729 57.8
Potri.018G044300 Populus trichocarpa HOM05D004619 ORTHO05D005738 3.6e-204 715.7 453 77.3
Oeu031693.1 Olea europaea HOM05D004619 ORTHO05D005738 2.9e-193 679.5 485 69.1
Pp3c16_3750 Physcomitrium patens HOM05D004619 ORTHO05D005738 3.2e-184 649.4 728 47.4
Mapoly0014s0066 Marchantia polymorpha HOM05D004619 ORTHO05D005738 9.3e-168 594.7 706 44.8
VMungo0647G0418 Vigna mungo HOM05D004619 ORTHO05D005738 5.8e-162 575.5 363 76.6
AagrBONN_evm.TU.Sc2ySwM_368.2349 Anthoceros agrestis HOM05D004619 ORTHO05D005738 2.1e-159 567.0 646 46.0
Actinidia14677 Actinidia chinensis HOM05D004619 ORTHO05D005738 2.4e-152 543.5 446 64.3
BcaC09g52090 Brassica carinata HOM05D004619 ORTHO05D005738 9.1e-131 471.9 384 61.2
Psat7g196840 Pisum sativum HOM05D004619 ORTHO05D005738 4.4e-109 399.8 263 71.1
SGA_v2.0_scaffold163G38073 Striga asiatica HOM05D004619 ORTHO05D005738 6.8e-102 375.9 254 72.4
Cpa.g.sc2198.1 Carica papaya HOM05D004619 ORTHO05D005738 3.4e-101 373.6 226 81.9
unitig_578.g16587 Utricularia gibba HOM05D004619 ORTHO05D005738 2.6e-85 320.9 291 58.4
VMungo0647G1361 Vigna mungo HOM05D004619 ORTHO05D005738 5.7e-85 319.7 267 59.6
Actinidia14676 Actinidia chinensis HOM05D004619 ORTHO05D005738 8.3e-76 289.3 167 85.6
unitig_578.g16586 Utricularia gibba HOM05D004619 ORTHO05D005738 1.9e-67 261.5 273 51.3
Cpa.g.c44012 Carica papaya HOM05D004619 ORTHO05D005738 1.1e-62 245.7 150 72.0
SMO146G0002 Selaginella moellendorffii HOM05D004619 ORTHO05D005738 4.5e-45 187.2 272 40.8
Lj5g0023577 Lotus japonicus HOM05D004619 ORTHO05D005738 1.8e-41 175.3 154 59.7
SMO173G0047 Selaginella moellendorffii HOM05D004619 ORTHO05D005738 4.3e-40 170.6 232 41.8
SMO173G0066 Selaginella moellendorffii HOM05D004619 ORTHO05D005738 1.6e-39 168.7 272 38.2
SEGI_12145 Sequoiadendron giganteum HOM05D004619 ORTHO05D005738 5.6e-32 143.7 109 62.4
CBR_g55392 Chara braunii HOM05D000019 ORTHO05D000048 6.9e-30 136.7 169 40.8
FvH4_4g13810 Fragaria vesca HOM05D004619 ORTHO05D005738 1.3e-28 132.5 107 65.4
SMO173G0051 Selaginella moellendorffii HOM05D004619 ORTHO05D005738 1.4e-27 129.0 154 42.9
Cpa.g.sc78.2 Carica papaya HOM05D004619 ORTHO05D005738 3.2e-27 127.9 133 56.4
SEGI_32974 Sequoiadendron giganteum HOM05D004619 ORTHO05D005738 3.2e-27 127.9 98 59.2
arahy.Tifrunner.gnm1.ann1.7I309S Arachis hypogaea HOM05D004619 ORTHO05D005738 7.1e-27 126.7 119 56.3
arahy.Tifrunner.gnm1.ann1.VKWI5R Arachis hypogaea HOM05D004619 ORTHO05D005738 4.6e-26 124.0 98 64.3
arahy.Tifrunner.gnm1.ann1.2KYU87 Arachis hypogaea HOM05D004619 ORTHO05D005738 1.3e-25 122.5 115 57.4
Dinv23371 Davidia involucrata HOM05D004619 ORTHO05D005738 1.1e-24 119.4 106 67.9
Cpa.g.sc78.1 Carica papaya HOM05D004619 ORTHO05D005738 4.3e-24 117.5 75 68.0
BolC6t36187H Brassica oleracea HOM05D004619 ORTHO05D005738 5.3e-22 110.5 109 51.4
Lsat_1_v5_gn_4_165860 Lactuca sativa HOM05D004619 ORTHO05D005738 5.3e-22 110.5 69 75.4
FAN14G2999 Fragaria x ananassa HOM05D004619 ORTHO05D003203 9.0e-22 109.8 81 65.4
FvH4_6g10180 Fragaria vesca HOM05D004619 ORTHO05D003203 1.2e-21 109.4 64 76.6
arahy.Tifrunner.gnm1.ann1.EP17SZ Arachis hypogaea HOM05D004619 ORTHO05D005738 1.0e-20 106.3 104 57.7
Lsat_1_v5_gn_8_131800 Lactuca sativa HOM05D003157 ORTHO05D004447 1.3e-20 105.9 75 74.7
BolC9t59437H Brassica oleracea HOM05D004619 ORTHO05D005738 5.5e-19 100.5 109 48.6
Dinv23369 Davidia involucrata HOM05D004619 ORTHO05D005738 5.5e-19 100.5 79 64.6
C09p66170 Brassica napus HOM05D004619 ORTHO05D005738 1.6e-18 99.0 109 47.7
MCO04G172 Micromonas commoda HOM05D004619 ORTHO05D005738 4.6e-18 97.4 574 24.0
CDE08G0324 Ceratophyllum demersum HOM05D004619 ORTHO05D005738 2.5e-16 91.7 65 69.2
CBR_g55394 Chara braunii HOM05D004619 ORTHO05D005738 3.3e-16 91.3 258 26.4
Cre08.g383650 Chlamydomonas reinhardtii HOM05D004619 ORTHO05D005738 1.3e-15 89.4 629 22.6
QL08p060719 Quercus lobata HOM05D004619 ORTHO05D005738 3.7e-15 87.8 55 78.2
Lsat_1_v5_gn_8_1401 Lactuca sativa HOM05D004619 ORTHO05D005738 6.3e-15 87.0 58 69.0
Lsat_1_v5_gn_6_18560 Lactuca sativa HOM05D000118 ORTHO05D005738 6.9e-14 83.6 55 69.1
Dinv23370 Davidia involucrata HOM05D004619 ORTHO05D005738 1.2e-13 82.8 129 41.9
CBR_g55391 Chara braunii HOM05D000019 ORTHO05D000002 3.4e-13 81.3 108 41.7
BcaC08g43687 Brassica carinata HOM05D004619 ORTHO05D005738 2.2e-12 78.6 57 63.2
A06p44050 Brassica napus HOM05D004619 ORTHO05D005738 6.5e-12 77.0 57 63.2
BraA06t27279Z Brassica rapa HOM05D004619 ORTHO05D005738 6.5e-12 77.0 57 63.2
BcaB03g16865 Brassica carinata HOM05D004619 ORTHO05D005738 9.4e-11 73.2 101 40.6
SEGI_14473 Sequoiadendron giganteum HOM05D004619 ORTHO05D005738 1.2e-10 72.8 70 52.9
Glyma.14G146000 Glycine max HOM05D004619 ORTHO05D005738 2.1e-10 72.0 53 66.0
Nn8g39123 Nelumbo nucifera HOM05D005233 ORTHO05D006308 2.3e-09 68.6 48 70.8
arahy.Tifrunner.gnm1.ann1.6B1VGR Arachis hypogaea HOM05D004619 ORTHO05D005738 2.0e-08 65.5 104 44.2
PRCOL_00003296 Prasinoderma coloniale HOM05D004619 ORTHO05D005738 5.7e-08 63.9 335 20.3
CDE08G1138 Ceratophyllum demersum HOM05D004619 ORTHO05D005738 2.8e-07 61.6 33 78.8
BcaC04g22550 Brassica carinata HOM05D004619 ORTHO05D032420 9.1e-06 56.6 75 45.3


User provided reference genes

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