Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj8A161G44 Lonicera japonica HOM05D004364 ORTHO05D006299 2.0e-91 339.0 159 100.0
Lj8C162G4 Lonicera japonica HOM05D004364 ORTHO05D006299 6.2e-32 141.4 178 47.2
HanXRQChr03g0076071 Helianthus annuus HOM05D004364 ORTHO05D006299 2.2e-29 132.9 171 45.6
HanXRQChr13g0407291 Helianthus annuus HOM05D004364 ORTHO05D006299 3.7e-29 132.1 175 45.1
Actinidia35287 Actinidia chinensis HOM05D004364 ORTHO05D006299 6.4e-29 131.3 166 47.0
ECA240G1374 Erigeron canadensis HOM05D004364 ORTHO05D006299 8.4e-29 131.0 176 45.5
CSS0001646 Camellia sinensis var. sinensis HOM05D004364 ORTHO05D006299 1.1e-28 130.6 191 42.9
CSS0013066 Camellia sinensis var. sinensis HOM05D004364 ORTHO05D006299 1.1e-28 130.6 191 42.9
DCAR_008692 Daucus carota HOM05D004364 ORTHO05D006299 1.9e-28 129.8 167 43.1
GSVIVG01014465001 Vitis vinifera HOM05D004364 ORTHO05D006299 9.2e-28 127.5 180 42.8
Cfa020489 Carpinus fangiana HOM05D004364 ORTHO05D006299 7.8e-27 124.4 178 42.7
Atru.chr2.2938 Acer truncatum HOM05D004364 ORTHO05D006299 1.0e-26 124.0 178 43.3
Sed0018829 Sechium edule HOM05D004364 ORTHO05D006299 1.7e-26 123.2 174 43.1
Ciclev10007478m.g Citrus clementina HOM05D004364 ORTHO05D006299 2.3e-26 122.9 173 42.8
Lalb_Chr02g0159341 Lupinus albus HOM05D004364 ORTHO05D006299 2.3e-26 122.9 164 42.7
Prupe.4G192200 Prunus persica HOM05D004364 ORTHO05D006299 2.3e-26 122.9 172 43.0
Eucgr.F01066 Eucalyptus grandis HOM05D004364 ORTHO05D006299 3.9e-26 122.1 183 43.2
FAN21G1304 Fragaria x ananassa HOM05D004364 ORTHO05D006299 3.9e-26 122.1 182 41.2
MD11G1234900 Malus domestica HOM05D004364 ORTHO05D006299 5.1e-26 121.7 172 43.6
Nn1g06827 Nelumbo nucifera HOM05D004364 ORTHO05D006299 5.1e-26 121.7 182 40.7
CANSAT11G0334 Cannabis sativa HOM05D004364 ORTHO05D006299 8.6e-26 120.9 172 43.0
CiPaw.11G178500 Carya illinoinensis HOM05D004364 ORTHO05D006299 8.6e-26 120.9 175 40.0
Manes.03G117700 Manihot esculenta HOM05D004364 ORTHO05D006299 8.6e-26 120.9 174 42.0
MELO3C018182.2 Cucumis melo HOM05D004364 ORTHO05D006299 1.1e-25 120.6 179 40.8
MD03G1217200 Malus domestica HOM05D004364 ORTHO05D006299 1.1e-25 120.6 172 43.0
Hma1.2p1_0015F.1_g010280 Hydrangea macrophylla HOM05D004364 ORTHO05D006299 1.9e-25 119.8 176 41.5
BcaC05g28303 Brassica carinata HOM05D004364 ORTHO05D006299 2.5e-25 119.4 175 41.1
BolC5t33082H Brassica oleracea HOM05D004364 ORTHO05D006299 2.5e-25 119.4 175 41.1
CsaV3_3G044300 Cucumis sativus L. HOM05D004364 ORTHO05D006299 2.5e-25 119.4 179 40.2
CARHR096430 Cardamine hirsuta HOM05D004364 ORTHO05D006299 3.3e-25 119.0 168 42.3
Peaxi162Scf00177g00118 Petunia axillaris HOM05D004364 ORTHO05D006299 3.3e-25 119.0 178 39.9
Peaxi162Scf01216g00070 Petunia axillaris HOM05D004364 ORTHO05D006299 3.3e-25 119.0 178 39.9
BcaB06g26128 Brassica carinata HOM05D004364 ORTHO05D006299 4.3e-25 118.6 170 41.8
C05p43630 Brassica napus HOM05D004364 ORTHO05D006299 4.3e-25 118.6 175 41.1
Cpa.g.sc12.20 Carica papaya HOM05D004364 ORTHO05D006299 4.3e-25 118.6 171 43.3
Sabra11G0111700 Salix brachista HOM05D004364 ORTHO05D006299 5.6e-25 118.2 178 41.6
A05p28190 Brassica napus HOM05D004364 ORTHO05D006299 7.3e-25 117.9 175 40.6
Cc05_g12790 Coffea canephora HOM05D004364 ORTHO05D006299 7.3e-25 117.9 174 40.2
FAN25G2975 Fragaria x ananassa HOM05D004364 ORTHO05D006299 7.3e-25 117.9 172 42.4
TAR626G1658 Trochodendron aralioides HOM05D004364 ORTHO05D006299 7.3e-25 117.9 182 41.2
FvH4_3g21160 Fragaria vesca HOM05D004364 ORTHO05D006299 9.6e-25 117.5 173 42.2
FAN16G3737 Fragaria x ananassa HOM05D004364 ORTHO05D006299 9.6e-25 117.5 173 42.2
Potri.011G125800 Populus trichocarpa HOM05D004364 ORTHO05D006299 9.6e-25 117.5 178 41.0
PGR083G1074 Punica granatum HOM05D004364 ORTHO05D006299 9.6e-25 117.5 183 41.5
BraA05t21700Z Brassica rapa HOM05D004364 ORTHO05D006299 1.2e-24 117.1 170 41.2
Nitab4.5_0001386g0060 Nicotiana tabacum HOM05D004364 ORTHO05D006299 1.2e-24 117.1 176 41.5
Sp3g18670 Schrenkiella parvula HOM05D004364 ORTHO05D006299 1.2e-24 117.1 175 40.6
Hund02178 Selenicereus undatus HOM05D004364 ORTHO05D006299 1.2e-24 117.1 191 39.8
ClCG11G018570 Citrullus lanatus HOM05D004364 ORTHO05D006299 1.6e-24 116.7 179 39.7
Nitab4.5_0000092g0270 Nicotiana tabacum HOM05D004364 ORTHO05D006299 1.6e-24 116.7 176 41.5
FAN11G0387 Fragaria x ananassa HOM05D004364 ORTHO05D006299 2.1e-24 116.3 173 41.6
Lalb_Chr06g0175311 Lupinus albus HOM05D004364 ORTHO05D006299 2.1e-24 116.3 176 41.5
RcHm_v2.0_Chr5g0036241 Rosa chinensis HOM05D004364 ORTHO05D006299 2.1e-24 116.3 172 41.3
Ca_01795_v3 Cicer arietinum L. HOM05D004364 ORTHO05D006299 2.8e-24 115.9 172 40.1
Thhalv10020069m.g Eutrema salsugineum HOM05D004364 ORTHO05D006299 2.8e-24 115.9 175 40.6
Gohir.A08G020600 Gossypium hirsutum HOM05D004364 ORTHO05D006299 2.8e-24 115.9 181 41.4
Glyma.12G146600 Glycine max HOM05D004364 ORTHO05D006299 3.6e-24 115.5 181 41.4
Gohir.D08G031200 Gossypium hirsutum HOM05D004364 ORTHO05D006299 3.6e-24 115.5 181 41.4
Gorai.004G028800 Gossypium raimondii HOM05D004364 ORTHO05D006299 3.6e-24 115.5 181 41.4
PSO210G4872 Papaver somniferum HOM05D004364 ORTHO05D006299 3.6e-24 115.5 171 42.1
vmacro09573 Vaccinium macrocarpon HOM05D004364 ORTHO05D006299 3.6e-24 115.5 169 42.0
Potri.001G408800 Populus trichocarpa HOM05D004364 ORTHO05D006299 4.7e-24 115.2 174 42.0
TWI39G0400 Tripterygium wilfordii HOM05D004364 ORTHO05D006299 4.7e-24 115.2 176 41.5
AL3G34510 Arabidopsis lyrata HOM05D004364 ORTHO05D006299 6.2e-24 114.8 168 41.1
CDE01G0428 Ceratophyllum demersum HOM05D004364 ORTHO05D006299 6.2e-24 114.8 156 42.9
Psat5g247520 Pisum sativum HOM05D004364 ORTHO05D006299 6.2e-24 114.8 172 40.1
HPP92_005995 Vanilla planifolia HOM05D004364 ORTHO05D006299 6.2e-24 114.8 180 42.2
AT3G20630 Arabidopsis thaliana HOM05D004364 ORTHO05D006299 8.1e-24 114.4 168 40.5
RhsimUnG0257500 Rhododendron simsii HOM05D004364 ORTHO05D006299 8.1e-24 114.4 169 42.0
Migut.H01895 Erythranthe guttata HOM05D004364 ORTHO05D006299 1.1e-23 114.0 175 39.4
Medtr2g081180 Medicago truncatula HOM05D004364 ORTHO05D006299 1.1e-23 114.0 177 39.0
PSO832G2674 Papaver somniferum HOM05D004364 ORTHO05D006299 1.4e-23 113.6 171 41.5
TPR.G32881 Trifolium pratense HOM05D004364 ORTHO05D006299 1.4e-23 113.6 172 40.1
Aqoxy1G03944 Aquilegia oxysepala HOM05D004364 ORTHO05D006299 1.8e-23 113.2 176 38.1
arahy.Tifrunner.gnm1.ann1.B7TU6S Arachis hypogaea HOM05D004364 ORTHO05D006299 1.8e-23 113.2 177 39.5
MSTRG.12935 Avicennia marina HOM05D004364 ORTHO05D006299 2.4e-23 112.8 175 39.4
Oeu060533.1 Olea europaea HOM05D004364 ORTHO05D006299 2.4e-23 112.8 180 41.1
Os01g0177200 Oryza sativa ssp. japonica HOM05D004364 ORTHO05D006299 3.1e-23 112.5 178 39.3
Phvul.011G156100 Phaseolus vulgaris HOM05D004364 ORTHO05D006299 4.0e-23 112.1 184 39.7
Aa31LG8G7430 Aethionema arabicum HOM05D004364 ORTHO05D006299 5.2e-23 111.7 175 38.3
BcaC01g03545 Brassica carinata HOM05D004364 ORTHO05D006299 5.2e-23 111.7 175 38.9
C03p51230 Brassica napus HOM05D004364 ORTHO05D006299 5.2e-23 111.7 175 38.9
BolC3t17413H Brassica oleracea HOM05D004364 ORTHO05D006299 5.2e-23 111.7 175 38.9
Duzib170G0088 Durio zibethinus HOM05D004364 ORTHO05D006299 5.2e-23 111.7 181 40.3
Ah.04g165340 Amaranthus hybridus HOM05D004364 ORTHO05D006299 6.8e-23 111.3 173 40.5
BcaB04g19118 Brassica carinata HOM05D004364 ORTHO05D006299 6.8e-23 111.3 175 38.9
CAN.G162.111 Capsicum annuum HOM05D004364 ORTHO05D006299 6.8e-23 111.3 176 40.3
Zm00001eb336890 Zea mays HOM05D004364 ORTHO05D006299 6.8e-23 111.3 175 40.0
arahy.Tifrunner.gnm1.ann1.19RIMK Arachis hypogaea HOM05D004364 ORTHO05D006299 8.9e-23 110.9 177 39.0
Carub.0003s2061 Capsella rubella HOM05D004364 ORTHO05D006299 8.9e-23 110.9 175 38.9
Glyma.06G255000 Glycine max HOM05D004364 ORTHO05D006299 8.9e-23 110.9 182 41.2
Sc16g0006700 Simmondsia chinensis HOM05D004364 ORTHO05D006299 8.9e-23 110.9 176 39.2
Nitab4.5_0000297g0190 Nicotiana tabacum HOM05D004364 ORTHO05D006299 1.2e-22 110.5 176 40.9
Nitab4.5_0001252g0070 Nicotiana tabacum HOM05D004364 ORTHO05D006299 1.2e-22 110.5 176 40.9
EL10Ac4g08041 Beta vulgaris HOM05D004364 ORTHO05D006299 1.5e-22 110.2 173 39.9
A03p41850 Brassica napus HOM05D004364 ORTHO05D006299 1.5e-22 110.2 175 38.3
BraA03t13338Z Brassica rapa HOM05D004364 ORTHO05D006299 1.5e-22 110.2 175 38.3
Lj3g0027191 Lotus japonicus HOM05D004364 ORTHO05D006299 1.5e-22 110.2 173 41.6
THA.LOC104816919 Tarenaya hassleriana HOM05D004364 ORTHO05D006299 1.5e-22 110.2 178 38.2
Aqoxy5G02435 Aquilegia oxysepala HOM05D004364 ORTHO05D006299 2.0e-22 109.8 172 38.4
Solyc07g063650.4 Solanum lycopersicum HOM05D004364 ORTHO05D006299 2.0e-22 109.8 176 39.8
Sopen07g031830 Solanum pennellii HOM05D004364 ORTHO05D006299 2.0e-22 109.8 176 39.8
SalBow7G1127 Salvia bowleyana HOM05D004364 ORTHO05D006299 2.6e-22 109.4 177 39.5
Manes.15G081800 Manihot esculenta HOM05D004364 ORTHO05D006299 3.4e-22 109.0 174 40.2
SGA_v2.0_scaffold9G04963 Striga asiatica HOM05D004364 ORTHO05D006299 4.4e-22 108.6 175 37.1
unitig_21.g20140 Utricularia gibba HOM05D004364 ORTHO05D006299 4.4e-22 108.6 175 39.4
AUR62041167 Chenopodium quinoa HOM05D004364 ORTHO05D006299 5.8e-22 108.2 173 39.3
COL.COLO4_09498 Corchorus olitorius HOM05D004364 ORTHO05D006299 7.6e-22 107.8 185 39.5
SEGI_22005 Sequoiadendron giganteum HOM05D004364 ORTHO05D006299 7.6e-22 107.8 181 39.2
Thecc.07G069000 Theobroma cacao HOM05D004364 ORTHO05D006299 7.6e-22 107.8 185 38.9
ATR1132G023 Amborella trichopoda HOM05D004364 ORTHO05D006299 3.8e-21 105.5 177 37.3
AUR62029293 Chenopodium quinoa HOM05D004364 ORTHO05D006299 1.9e-20 103.2 173 37.0
arahy.Tifrunner.gnm1.ann1.CZGD0C Arachis hypogaea HOM05D004364 ORTHO05D006299 3.2e-20 102.4 163 39.3
SMO347G0465 Selaginella moellendorffii HOM05D004364 ORTHO05D006299 9.6e-17 90.9 177 35.6
GSVIVG01014461001 Vitis vinifera HOM05D004364 ORTHO05D006299 9.6e-17 90.9 92 52.2
Mapoly0028s0083 Marchantia polymorpha HOM05D004364 ORTHO05D006299 4.8e-16 88.6 183 32.8
Lsat_1_v5_gn_0_5341 Lactuca sativa HOM05D004364 ORTHO05D006299 8.1e-16 87.8 157 35.7
Haze_09550 Corylus avellana HOM05D004364 ORTHO05D006299 1.1e-15 87.4 151 39.1
Pp3c19_17130 Physcomitrium patens HOM05D004364 ORTHO05D006299 1.8e-15 86.7 182 33.0
CBR_g76006 Chara braunii HOM05D004364 ORTHO05D006299 8.4e-13 77.8 120 40.0
Cre02.g080350 Chlamydomonas reinhardtii HOM05D004364 ORTHO05D006299 9.3e-12 74.3 138 34.8
MCO15G328 Micromonas commoda HOM05D004364 ORTHO05D006299 7.3e-09 64.7 122 32.8
Haze_26164 Corylus avellana HOM05D004364 ORTHO05D006299 1.3e-08 63.9 52 53.8
Sed0014921 Sechium edule HOM05D004364 ORTHO05D006299 2.1e-08 63.2 47 59.6
QL08p017220 Quercus lobata HOM05D004364 ORTHO05D006299 3.1e-07 59.3 102 37.3
GSVIVG01015714001 Vitis vinifera HOM05D004364 ORTHO05D019261 5.3e-07 58.5 39 66.7
MD15G1178000 Malus domestica HOM05D004364 ORTHO05D006299 1.2e-06 57.4 36 58.3
Medtr4g077475 Medicago truncatula HOM05D004364 ORTHO05D006299 1.5e-06 57.0 52 48.1
GSVIVG01015715001 Vitis vinifera HOM05D004364 ORTHO05D019261 3.4e-06 55.8 38 65.8
Lj1g0005584 Lotus japonicus HOM05D004364 ORTHO05D006299 4.5e-06 55.5 71 45.1


User provided reference genes

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