Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj7C555T10 Lonicera japonica HOM05D006268 ORTHO05D008118 6.1e-82 307.4 150 100.0
DCAR_029548 Daucus carota HOM05D006268 ORTHO05D008118 2.7e-61 238.8 150 78.0
CSS0005578 Camellia sinensis var. sinensis HOM05D006268 ORTHO05D008118 3.3e-59 231.9 150 74.0
Actinidia33290 Actinidia chinensis HOM05D006268 ORTHO05D008118 9.5e-59 230.3 147 76.2
CSS0033423 Camellia sinensis var. sinensis HOM05D006268 ORTHO05D008118 2.8e-58 228.8 150 73.3
GSVIVG01016051001 Vitis vinifera HOM05D006268 ORTHO05D008118 8.9e-57 223.8 150 74.0
MSTRG.4977 Avicennia marina HOM05D006268 ORTHO05D008118 2.0e-56 222.6 150 72.0
CAN.G1551.1 Capsicum annuum HOM05D006268 ORTHO05D008118 9.9e-56 220.3 147 73.5
Sopen01g032530 Solanum pennellii HOM05D006268 ORTHO05D008118 1.3e-55 219.9 147 74.8
Rhsim01G0145800 Rhododendron simsii HOM05D006268 ORTHO05D008118 2.2e-55 219.2 147 71.4
PGSC0003DMG400001820 Solanum tuberosum HOM05D006268 ORTHO05D008118 6.4e-55 217.6 147 73.5
vmacro21105 Vaccinium macrocarpon HOM05D006268 ORTHO05D008118 6.4e-55 217.6 147 71.4
Solyc01g080940.3 Solanum lycopersicum HOM05D006268 ORTHO05D008118 8.4e-55 217.2 147 74.1
Duzib128G0100 Durio zibethinus HOM05D006268 ORTHO05D008118 1.1e-54 216.9 147 71.4
Prupe.2G109200 Prunus persica HOM05D006268 ORTHO05D008118 1.9e-54 216.1 150 70.0
Cc02_g26120 Coffea canephora HOM05D006268 ORTHO05D008118 3.2e-54 215.3 150 72.7
MD00G1098400 Malus domestica HOM05D006268 ORTHO05D008118 4.1e-54 214.9 151 72.2
Nitab4.5_0001209g0060 Nicotiana tabacum HOM05D006268 ORTHO05D008118 4.1e-54 214.9 147 72.1
TWI59G0917 Tripterygium wilfordii HOM05D006268 ORTHO05D008118 7.1e-54 214.2 150 70.0
Gohir.A06G169600 Gossypium hirsutum HOM05D006268 ORTHO05D008118 1.2e-53 213.4 147 70.7
TAR375G0229 Trochodendron aralioides HOM05D006268 ORTHO05D008118 1.2e-53 213.4 150 69.3
Gorai.N008000 Gossypium raimondii HOM05D006268 ORTHO05D008118 2.7e-53 212.2 147 70.7
Nitab4.5_0001476g0040 Nicotiana tabacum HOM05D006268 ORTHO05D008118 3.5e-53 211.8 147 71.4
CiPaw.13G019100 Carya illinoinensis HOM05D006268 ORTHO05D008118 4.6e-53 211.5 150 70.7
COL.COLO4_19510 Corchorus olitorius HOM05D006268 ORTHO05D006513 6.0e-53 211.1 143 71.3
FAN03G0807 Fragaria x ananassa HOM05D006268 ORTHO05D008118 6.0e-53 211.1 150 70.0
Cfa010996 Carpinus fangiana HOM05D006268 ORTHO05D008118 7.8e-53 210.7 150 72.0
FvH4_7g08020 Fragaria vesca HOM05D006268 ORTHO05D008118 1.0e-52 210.3 150 70.0
FAN01G0355 Fragaria x ananassa HOM05D006268 ORTHO05D008118 1.0e-52 210.3 150 70.0
RcHm_v2.0_Chr1g0341291 Rosa chinensis HOM05D006268 ORTHO05D008118 2.3e-52 209.1 150 70.7
FAN06G0712 Fragaria x ananassa HOM05D006268 ORTHO05D008118 3.9e-52 208.4 150 69.3
Potri.002G238300 Populus trichocarpa HOM05D006268 ORTHO05D008118 6.6e-52 207.6 150 69.3
MELO3C006233.2 Cucumis melo HOM05D006268 ORTHO05D008118 8.6e-52 207.2 147 71.4
ClCG05G002670 Citrullus lanatus HOM05D006268 ORTHO05D008118 1.1e-51 206.8 147 70.7
FAN10G2079 Fragaria x ananassa HOM05D006268 ORTHO05D008118 1.1e-51 206.8 150 69.3
Phvul.010G033866 Phaseolus vulgaris HOM05D006268 ORTHO05D008118 1.1e-51 206.8 150 66.0
Sed0013667 Sechium edule HOM05D006268 ORTHO05D008118 1.5e-51 206.5 147 69.4
CsaV3_3G010120 Cucumis sativus L. HOM05D006268 ORTHO05D008118 1.9e-51 206.1 147 70.7
HanXRQChr04g0123661 Helianthus annuus HOM05D006268 ORTHO05D008118 1.9e-51 206.1 150 66.7
Haze_02942 Corylus avellana HOM05D006268 ORTHO05D008118 2.5e-51 205.7 150 70.0
Sabra02G0181600 Salix brachista HOM05D006268 ORTHO05D008118 2.5e-51 205.7 147 68.7
VMungo0331G0592 Vigna mungo HOM05D006268 ORTHO05D008118 4.3e-51 204.9 150 68.0
Glyma.16G080700 Glycine max HOM05D006268 ORTHO05D008118 5.6e-51 204.5 150 68.7
Psat4g207400 Pisum sativum HOM05D006268 ORTHO05D008118 5.6e-51 204.5 150 68.7
Sc26g0001930 Simmondsia chinensis HOM05D006268 ORTHO05D008118 5.6e-51 204.5 150 68.7
arahy.Tifrunner.gnm1.ann1.V3PJPX Arachis hypogaea HOM05D006268 ORTHO05D008118 1.6e-50 203.0 150 67.3
Ciclev10021110m.g Citrus clementina HOM05D006268 ORTHO05D008118 1.6e-50 203.0 150 68.0
Lalb_Chr07g0194551 Lupinus albus HOM05D006268 ORTHO05D008118 1.6e-50 203.0 150 68.7
arahy.Tifrunner.gnm1.ann1.EHLP6C Arachis hypogaea HOM05D006268 ORTHO05D008118 2.1e-50 202.6 150 67.3
Ca_23170_v3 Cicer arietinum L. HOM05D006268 ORTHO05D008118 3.6e-50 201.8 150 67.3
Nn1g00551 Nelumbo nucifera HOM05D006268 ORTHO05D008118 3.6e-50 201.8 151 68.2
PSO063G1446 Papaver somniferum HOM05D006268 ORTHO05D008118 3.6e-50 201.8 150 64.7
Thecc.03G001300 Theobroma cacao HOM05D006268 ORTHO05D008118 6.2e-50 201.1 150 66.0
Migut.N01815 Erythranthe guttata HOM05D006268 ORTHO05D008118 8.1e-50 200.7 149 67.1
QL04p024264 Quercus lobata HOM05D006268 ORTHO05D008118 1.1e-49 200.3 149 68.5
SalBow4G0743 Salvia bowleyana HOM05D006268 ORTHO05D008118 1.1e-49 200.3 150 64.7
Glyma.03G093200 Glycine max HOM05D006268 ORTHO05D008118 1.8e-49 199.5 150 66.0
Atru.BG.53.p Acer truncatum HOM05D006268 ORTHO05D008118 4.0e-49 198.4 151 67.5
Eucgr.D01130 Eucalyptus grandis HOM05D006268 ORTHO05D008118 6.9e-49 197.6 150 66.0
CANSAT54G1338 Cannabis sativa HOM05D006268 ORTHO05D008118 9.0e-49 197.2 154 67.5
Lsat_1_v5_gn_7_10860 Lactuca sativa HOM05D006268 ORTHO05D008118 9.0e-49 197.2 147 66.7
PSO782G1498 Papaver somniferum HOM05D006268 ORTHO05D008118 1.5e-48 196.4 150 62.7
Aqoxy3G02409 Aquilegia oxysepala HOM05D006268 ORTHO05D008118 2.6e-48 195.7 150 66.0
Aqoxy3G02437 Aquilegia oxysepala HOM05D006268 ORTHO05D008118 2.6e-48 195.7 150 66.0
PGR083G0810 Punica granatum HOM05D006268 ORTHO05D008118 1.7e-47 193.0 150 64.0
unitig_22.g5778 Utricularia gibba HOM05D006268 ORTHO05D008118 1.7e-47 193.0 148 66.2
Lj3g0019214 Lotus japonicus HOM05D006268 ORTHO05D008118 6.4e-47 191.0 147 65.3
AUR62023342 Chenopodium quinoa HOM05D006268 ORTHO05D008118 2.7e-45 185.7 150 61.3
Thhalv10014126m.g Eutrema salsugineum HOM05D006268 ORTHO05D008118 3.5e-45 185.3 147 62.6
Medtr8g010550 Medicago truncatula HOM05D006268 ORTHO05D008118 1.0e-44 183.7 151 62.9
Ah.06g189690 Amaranthus hybridus HOM05D006268 ORTHO05D008118 1.3e-44 183.3 150 60.7
SGA_v2.0_scaffold95G28736 Striga asiatica HOM05D006268 ORTHO05D008118 1.7e-44 183.0 153 64.1
BcaC03g14111 Brassica carinata HOM05D006268 ORTHO05D008118 2.3e-44 182.6 147 62.6
EL10Ac1g00692 Beta vulgaris HOM05D006268 ORTHO05D008118 3.0e-44 182.2 150 60.7
Os03g0390700 Oryza sativa ssp. japonica HOM05D006268 ORTHO05D008118 3.0e-44 182.2 153 62.1
A02p07860 Brassica napus HOM05D006268 ORTHO05D008118 3.9e-44 181.8 147 61.9
C02p13500 Brassica napus HOM05D006268 ORTHO05D008118 3.9e-44 181.8 147 62.6
BolC2t07462H Brassica oleracea HOM05D006268 ORTHO05D008118 3.9e-44 181.8 147 62.6
THA.LOC104799599 Tarenaya hassleriana HOM05D006268 ORTHO05D008118 3.9e-44 181.8 150 62.0
BraA02t05859Z Brassica rapa HOM05D006268 ORTHO05D008118 5.1e-44 181.4 147 61.9
HPP92_028001 Vanilla planifolia HOM05D006268 ORTHO05D008118 1.1e-43 180.3 128 67.2
BcaB05g22409 Brassica carinata HOM05D006268 ORTHO05D008118 1.9e-43 179.5 147 61.9
Sp6g19880 Schrenkiella parvula HOM05D006268 ORTHO05D008118 4.3e-43 178.3 131 64.9
Carub.0008s1876 Capsella rubella HOM05D006268 ORTHO05D008118 7.3e-43 177.6 146 61.0
AT5G58220 Arabidopsis thaliana HOM05D006268 ORTHO05D008118 9.6e-43 177.2 131 64.9
AL8G34320 Arabidopsis lyrata HOM05D006268 ORTHO05D008118 2.8e-42 175.6 147 61.9
Aa31LG11G10 Aethionema arabicum HOM05D006268 ORTHO05D008118 1.1e-41 173.7 149 59.1
Hund26937 Selenicereus undatus HOM05D006268 ORTHO05D008118 1.1e-41 173.7 150 60.0
Zm00001eb392560 Zea mays HOM05D006268 ORTHO05D008118 1.4e-41 173.3 140 61.4
ATR0049G059 Amborella trichopoda HOM05D006268 ORTHO05D008118 6.9e-41 171.0 150 58.0
CARHR272020 Cardamine hirsuta HOM05D006268 ORTHO05D008118 4.5e-40 168.3 143 61.5
BcaB05g22411 Brassica carinata HOM05D006268 ORTHO05D008118 4.3e-35 151.8 134 58.2
SEGI_16160 Sequoiadendron giganteum HOM05D006268 ORTHO05D008118 2.1e-34 149.4 164 50.0
AUR62013813 Chenopodium quinoa HOM05D006268 ORTHO05D008118 1.8e-33 146.4 111 64.0
SHI28983 Sapria himalayana HOM05D006268 ORTHO05D008118 1.8e-33 146.4 125 59.2
TPR.G9770 Trifolium pratense HOM05D006268 ORTHO05D008118 3.4e-32 142.1 147 51.7
ECA236G2174 Erigeron canadensis HOM05D006268 ORTHO05D008118 5.8e-32 141.4 109 63.3
Sc26g0001910 Simmondsia chinensis HOM05D006268 ORTHO05D008118 6.4e-31 137.9 151 51.7
Pp3c4_10360 Physcomitrium patens HOM05D006268 ORTHO05D008118 9.3e-30 134.0 152 50.7
SMO367G0371 Selaginella moellendorffii HOM05D006268 ORTHO05D008118 3.5e-29 132.1 159 46.5
Manes.08G055700 Manihot esculenta HOM05D006268 ORTHO05D008118 1.3e-28 130.2 107 61.7
Mapoly0090s0043 Marchantia polymorpha HOM05D006268 ORTHO05D008118 8.2e-26 120.9 143 44.1
BolC9t57859H Brassica oleracea HOM05D006268 ORTHO05D008118 1.8e-25 119.8 81 67.9
PRCOL_00004243 Prasinoderma coloniale HOM05D006268 ORTHO05D008118 1.9e-22 109.8 135 45.9
CBR_g30589 Chara braunii HOM05D006268 ORTHO05D008118 5.1e-20 101.7 237 30.8
MCO05G065 Micromonas commoda HOM05D006268 ORTHO05D008118 2.5e-19 99.4 132 43.2
AagrBONN_evm.TU.Sc2ySwM_228.2734 Anthoceros agrestis HOM05D006268 ORTHO05D008118 1.8e-17 93.2 117 46.2
Cre17.g735950 Chlamydomonas reinhardtii HOM05D006268 ORTHO05D008118 1.5e-16 90.1 136 39.0
Dinv43994 Davidia involucrata HOM05D006268 ORTHO05D008118 7.6e-16 87.8 60 78.3
CDE04G2879 Ceratophyllum demersum HOM05D006268 ORTHO05D008118 1.1e-14 84.0 91 52.7
BcaC04g19902 Brassica carinata HOM05D006268 ORTHO05D008118 6.7e-12 74.7 57 59.6
Sabra14G0137200 Salix brachista HOM05D008143 ORTHO05D010256 5.9e-08 61.6 66 48.5
Ca_29090_v3 Cicer arietinum L. HOM05D000582 ORTHO05D034183 3.8e-07 58.9 108 31.5
C09p50070 Brassica napus HOM05D006268 ORTHO05D008118 5.5e-06 55.1 81 40.7


User provided reference genes

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