Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj7C54T6 Lonicera japonica HOM05D002485 ORTHO05D002629 2.3e-38 161.8 81 100.0
Atru.chr3.414 Acer truncatum HOM05D002485 ORTHO05D002629 1.1e-16 89.7 65 69.2
GSVIVG01003545001 Vitis vinifera HOM05D002485 ORTHO05D002629 1.1e-16 89.7 60 70.0
GSVIVG01004324001 Vitis vinifera HOM05D002485 ORTHO05D002629 1.1e-16 89.7 60 70.0
CANSAT01G2700 Cannabis sativa HOM05D002485 ORTHO05D002629 1.4e-16 89.4 66 63.6
Cpa.g.sc6.390 Carica papaya HOM05D002485 ORTHO05D002629 1.4e-16 89.4 59 71.2
Oeu004875.1 Olea europaea HOM05D002485 ORTHO05D002629 1.4e-16 89.4 68 64.7
Dinv39887 Davidia involucrata HOM05D002485 ORTHO05D002629 1.9e-16 89.0 68 64.7
MD15G1279600 Malus domestica HOM05D002485 ORTHO05D002629 1.9e-16 89.0 68 61.8
TAR628G0313 Trochodendron aralioides HOM05D002485 ORTHO05D002629 2.4e-16 88.6 61 70.5
vmacro05318 Vaccinium macrocarpon HOM05D002485 ORTHO05D002629 2.4e-16 88.6 68 61.8
BraA09t36619Z Brassica rapa HOM05D002485 ORTHO05D002629 3.2e-16 88.2 59 71.2
Thecc.01G051000 Theobroma cacao HOM05D002485 ORTHO05D002629 3.2e-16 88.2 65 69.2
A07p17030 Brassica napus HOM05D002485 ORTHO05D002629 4.1e-16 87.8 59 69.5
C07p24890 Brassica napus HOM05D002485 ORTHO05D002629 4.1e-16 87.8 59 69.5
BraA07t29430Z Brassica rapa HOM05D002485 ORTHO05D002629 4.1e-16 87.8 59 69.5
MELO3C020945.2 Cucumis melo HOM05D002485 ORTHO05D002629 4.1e-16 87.8 66 62.1
Duzib264G0708 Durio zibethinus HOM05D002485 ORTHO05D002629 4.1e-16 87.8 65 69.2
Hma1.2p1_0873F.1_g231300 Hydrangea macrophylla HOM05D002485 ORTHO05D002629 5.4e-16 87.4 66 62.1
Sp2g29800 Schrenkiella parvula HOM05D002485 ORTHO05D002629 7.0e-16 87.0 59 71.2
BcaC06g34759 Brassica carinata HOM05D002485 ORTHO05D002629 9.2e-16 86.7 59 67.8
BolC7t43017H Brassica oleracea HOM05D002485 ORTHO05D002629 9.2e-16 86.7 59 67.8
FvH4_1g15520 Fragaria vesca HOM05D002485 ORTHO05D002629 9.2e-16 86.7 65 67.7
FAN19G2779 Fragaria x ananassa HOM05D002485 ORTHO05D002629 9.2e-16 86.7 65 67.7
FAN28G1524 Fragaria x ananassa HOM05D002485 ORTHO05D002629 9.2e-16 86.7 65 67.7
MD02G1167000 Malus domestica HOM05D002485 ORTHO05D002629 9.2e-16 86.7 65 63.1
Sed0026016 Sechium edule HOM05D002485 ORTHO05D002629 9.2e-16 86.7 68 58.8
Eucgr.I00975 Eucalyptus grandis HOM05D002485 ORTHO05D002629 1.2e-15 86.3 61 65.6
BcaB02g09977 Brassica carinata HOM05D002485 ORTHO05D002629 1.6e-15 85.9 59 67.8
Gohir.D12G089400 Gossypium hirsutum HOM05D002485 ORTHO05D002629 1.6e-15 85.9 65 67.7
MBI16_g24709_MAGBIO Magnolia biondii HOM05D002485 ORTHO05D002629 1.6e-15 85.9 61 67.2
Medtr8g079680 Medicago truncatula HOM05D002485 ORTHO05D002629 1.6e-15 85.9 59 66.1
Rhsim10G0121000 Rhododendron simsii HOM05D002485 ORTHO05D002629 1.6e-15 85.9 59 67.8
BcaC04g23166 Brassica carinata HOM05D002485 ORTHO05D002629 2.0e-15 85.5 59 69.5
C09p11490 Brassica napus HOM05D002485 ORTHO05D002629 2.0e-15 85.5 59 69.5
BolC9t54037H Brassica oleracea HOM05D002485 ORTHO05D002629 2.0e-15 85.5 59 69.5
CiPaw.01G023000 Carya illinoinensis HOM05D002485 ORTHO05D002629 2.0e-15 85.5 65 66.2
ClCG02G013310 Citrullus lanatus HOM05D002485 ORTHO05D002629 2.0e-15 85.5 66 60.6
Lj4g0002847 Lotus japonicus HOM05D002485 ORTHO05D002629 2.0e-15 85.5 59 67.8
RcHm_v2.0_Chr2g0104801 Rosa chinensis HOM05D002485 ORTHO05D002629 2.0e-15 85.5 65 66.2
TPR.G19026 Trifolium pratense HOM05D002485 ORTHO05D002629 2.0e-15 85.5 59 64.4
MSTRG.23775 Avicennia marina HOM05D002485 ORTHO05D002629 2.7e-15 85.1 61 67.2
MSTRG.2902 Avicennia marina HOM05D002485 ORTHO05D002629 2.7e-15 85.1 56 73.2
Lalb_Chr05g0226711 Lupinus albus HOM05D002485 ORTHO05D002629 2.7e-15 85.1 59 67.8
Sabra07G0036000 Salix brachista HOM05D002485 ORTHO05D002629 2.7e-15 85.1 65 64.6
VMungo0251G3518 Vigna mungo HOM05D002485 ORTHO05D002629 3.5e-15 84.7 59 64.4
Aa31LG1G15420 Aethionema arabicum HOM05D002485 ORTHO05D002629 4.6e-15 84.3 59 66.1
Ciclev10026371m.g Citrus clementina HOM05D002485 ORTHO05D002629 4.6e-15 84.3 60 66.7
FAN23G2706 Fragaria x ananassa HOM05D002485 ORTHO05D002629 4.6e-15 84.3 64 62.5
Glyma.05G081300 Glycine max HOM05D002485 ORTHO05D002629 4.6e-15 84.3 59 69.5
Gorai.008G073500 Gossypium raimondii HOM05D002485 ORTHO05D002629 4.6e-15 84.3 65 67.7
Psat4g089400 Pisum sativum HOM05D002485 ORTHO05D002629 4.6e-15 84.3 59 67.8
Migut.K00826 Erythranthe guttata HOM05D002485 ORTHO05D002629 1.0e-14 83.2 58 69.0
SalBow1G4175 Salvia bowleyana HOM05D002485 ORTHO05D002629 1.0e-14 83.2 59 71.2
TWI53G1244 Tripterygium wilfordii HOM05D002485 ORTHO05D002629 1.0e-14 83.2 65 61.5
CSS0035303 Camellia sinensis var. sinensis HOM05D002485 ORTHO05D002629 1.3e-14 82.8 59 66.1
Cc07_g05750 Coffea canephora HOM05D002485 ORTHO05D002629 1.3e-14 82.8 68 54.4
unitig_0.g2309 Utricularia gibba HOM05D002485 ORTHO05D002629 1.3e-14 82.8 60 66.7
AT5G66860 Arabidopsis thaliana HOM05D002485 ORTHO05D002629 1.7e-14 82.4 59 64.4
QL06p042646 Quercus lobata HOM05D002485 ORTHO05D002629 1.7e-14 82.4 60 66.7
Phvul.003G246600 Phaseolus vulgaris HOM05D002485 ORTHO05D002629 2.3e-14 82.0 59 61.0
Zm00001eb219090 Zea mays HOM05D002485 ORTHO05D002629 2.3e-14 82.0 63 61.9
Gohir.A12G069800 Gossypium hirsutum HOM05D002485 ORTHO05D002629 3.0e-14 81.6 65 66.2
HanXRQChr15g0489951 Helianthus annuus HOM05D002485 ORTHO05D002629 3.0e-14 81.6 60 63.3
Nn5g29342 Nelumbo nucifera HOM05D002485 ORTHO05D002629 3.0e-14 81.6 68 55.9
Ca_04465_v3 Cicer arietinum L. HOM05D002485 ORTHO05D002629 3.9e-14 81.3 59 64.4
Lsat_1_v5_gn_4_168780 Lactuca sativa HOM05D002485 ORTHO05D002629 3.9e-14 81.3 68 58.8
COL.COLO4_11365 Corchorus olitorius HOM05D002485 ORTHO05D002629 5.0e-14 80.9 61 62.3
CsaV3_2G017490 Cucumis sativus L. HOM05D002485 ORTHO05D002629 5.0e-14 80.9 66 57.6
ECA232G3082 Erigeron canadensis HOM05D002485 ORTHO05D002708 5.0e-14 80.9 60 63.3
Potri.007G039700 Populus trichocarpa HOM05D002485 ORTHO05D002629 5.0e-14 80.9 76 53.9
HPP92_000886 Vanilla planifolia HOM05D002485 ORTHO05D002629 5.0e-14 80.9 77 51.9
arahy.Tifrunner.gnm1.ann1.A4RMQG Arachis hypogaea HOM05D002485 ORTHO05D002629 6.6e-14 80.5 59 61.0
arahy.Tifrunner.gnm1.ann1.MMVZ8N Arachis hypogaea HOM05D002485 ORTHO05D002629 6.6e-14 80.5 59 61.0
TWI73G0212 Tripterygium wilfordii HOM05D002485 ORTHO05D002629 6.6e-14 80.5 59 61.0
AL8G44540 Arabidopsis lyrata HOM05D002485 ORTHO05D002629 8.6e-14 80.1 59 62.7
Glyma.17G178001 Glycine max HOM05D002485 ORTHO05D002629 8.6e-14 80.1 59 62.7
Carub.0008s2763 Capsella rubella HOM05D002485 ORTHO05D002629 1.1e-13 79.7 59 61.0
CARHR280810 Cardamine hirsuta HOM05D002485 ORTHO05D002629 1.1e-13 79.7 59 64.4
Actinidia14018 Actinidia chinensis HOM05D002485 ORTHO05D002629 1.5e-13 79.3 60 60.0
Actinidia36507 Actinidia chinensis HOM05D002485 ORTHO05D002629 1.5e-13 79.3 60 60.0
Potri.005G135000 Populus trichocarpa HOM05D002485 ORTHO05D002629 1.5e-13 79.3 59 64.4
PGR031G0729 Punica granatum HOM05D002485 ORTHO05D002629 1.5e-13 79.3 68 55.9
Manes.12G093600 Manihot esculenta HOM05D002485 ORTHO05D002629 1.9e-13 79.0 65 60.0
THA.LOC104827055 Tarenaya hassleriana HOM05D002485 ORTHO05D002629 1.9e-13 79.0 62 61.3
DCAR_010920 Daucus carota HOM05D002485 ORTHO05D002629 3.3e-13 78.2 56 64.3
Actinidia12063 Actinidia chinensis HOM05D002485 ORTHO05D002629 4.3e-13 77.8 60 56.7
Peaxi162Scf00993g00338 Petunia axillaris HOM05D002485 ORTHO05D002629 7.3e-13 77.0 59 59.3
AUR62001961 Chenopodium quinoa HOM05D002485 ORTHO05D002629 9.5e-13 76.6 60 61.7
ATR0225G035 Amborella trichopoda HOM05D002485 ORTHO05D002629 4.7e-12 74.3 61 55.7
AUR62003845 Chenopodium quinoa HOM05D002485 ORTHO05D002629 6.2e-12 73.9 60 61.7
PGSC0003DMG400010066 Solanum tuberosum HOM05D002485 ORTHO05D002629 1.1e-11 73.2 59 55.9
Haze_15439 Corylus avellana HOM05D002485 ORTHO05D002629 1.4e-11 72.8 61 63.9
Nitab4.5_0000440g0080 Nicotiana tabacum HOM05D002485 ORTHO05D002629 1.4e-11 72.8 59 54.2
Nitab4.5_0002157g0120 Nicotiana tabacum HOM05D002485 ORTHO05D002629 1.4e-11 72.8 59 54.2
SGA_v2.0_scaffold62G21527 Striga asiatica HOM05D002485 ORTHO05D002629 1.8e-11 72.4 52 63.5
CAN.G836.57 Capsicum annuum HOM05D002485 ORTHO05D002629 4.0e-11 71.2 59 54.2
Sopen02g035120 Solanum pennellii HOM05D002485 ORTHO05D002629 4.0e-11 71.2 59 55.9
Solyc02g090420.2 Solanum lycopersicum HOM05D002485 ORTHO05D002629 5.2e-11 70.9 59 54.2
Sc03g0001350 Simmondsia chinensis HOM05D002485 ORTHO05D002629 6.8e-11 70.5 61 55.7
Thhalv10004830m.g Eutrema salsugineum HOM05D002485 ORTHO05D002629 1.5e-10 69.3 51 64.7
Hund13577 Selenicereus undatus HOM05D002485 ORTHO05D002629 1.5e-10 69.3 59 55.9
Ah.03g144330 Amaranthus hybridus HOM05D002485 ORTHO05D002629 3.4e-10 68.2 59 55.9
Aqoxy6G00886 Aquilegia oxysepala HOM05D002485 ORTHO05D002629 4.4e-10 67.8 70 50.0
CDE06G1327 Ceratophyllum demersum HOM05D002485 ORTHO05D002629 3.2e-08 61.6 58 50.0
Oeu059575.1 Olea europaea HOM05D002485 ORTHO05D002629 5.4e-08 60.8 68 38.2
Sp7g21540 Schrenkiella parvula HOM05D002485 ORTHO05D002629 5.4e-08 60.8 69 40.6
Atru.chr9.2092 Acer truncatum HOM05D002485 ORTHO05D002629 7.1e-08 60.5 68 38.2
Aa31LG6G6840 Aethionema arabicum HOM05D002485 ORTHO05D002629 1.2e-07 59.7 63 42.9
AT4G23620 Arabidopsis thaliana HOM05D002485 ORTHO05D002629 1.6e-07 59.3 71 43.7
AL7G29750 Arabidopsis lyrata HOM05D002485 ORTHO05D002629 2.1e-07 58.9 63 44.4
Os01g0593500 Oryza sativa ssp. japonica HOM05D002485 ORTHO05D002629 2.7e-07 58.5 68 38.2
Carub.0007s1752 Capsella rubella HOM05D002485 ORTHO05D002629 3.5e-07 58.2 63 46.0
Thhalv10026041m.g Eutrema salsugineum HOM05D002485 ORTHO05D002629 3.5e-07 58.2 63 44.4
Os05g0270000 Oryza sativa ssp. japonica HOM05D002485 ORTHO05D002629 3.5e-07 58.2 68 38.2
Prupe.1G080900 Prunus persica HOM05D002485 ORTHO05D002629 3.5e-07 58.2 68 36.8
PGSC0003DMG400015775 Solanum tuberosum HOM05D002485 ORTHO05D002629 4.6e-07 57.8 65 41.5
THA.LOC104806423 Tarenaya hassleriana HOM05D002485 ORTHO05D002629 4.6e-07 57.8 69 37.7
THA.LOC104814787 Tarenaya hassleriana HOM05D002485 ORTHO05D002629 4.6e-07 57.8 69 37.7
MD14G1007200 Malus domestica HOM05D002485 ORTHO05D002629 6.0e-07 57.4 69 40.6
Potri.001G097801 Populus trichocarpa HOM05D002485 ORTHO05D002629 6.0e-07 57.4 66 39.4
Prupe.1G563200 Prunus persica HOM05D002485 ORTHO05D002629 6.0e-07 57.4 68 36.8
Sabra01G0073200 Salix brachista HOM05D002485 ORTHO05D002629 6.0e-07 57.4 66 37.9
CSS0045914 Camellia sinensis var. sinensis HOM05D002485 ORTHO05D002629 7.8e-07 57.0 69 36.2
Hund11427 Selenicereus undatus HOM05D002485 ORTHO05D002629 7.8e-07 57.0 63 39.7
GSVIVG01019058001 Vitis vinifera HOM05D002485 ORTHO05D002629 7.8e-07 57.0 69 40.6
GSVIVG01019439001 Vitis vinifera HOM05D002485 ORTHO05D002629 7.8e-07 57.0 69 40.6
BcaC09g50970 Brassica carinata HOM05D002485 ORTHO05D002629 1.0e-06 56.6 63 41.3
BcaNung01070 Brassica carinata HOM05D002485 ORTHO05D002629 1.0e-06 56.6 63 41.3
A01p14920 Brassica napus HOM05D002485 ORTHO05D002629 1.0e-06 56.6 63 41.3
C01p18620 Brassica napus HOM05D002485 ORTHO05D002629 1.0e-06 56.6 63 41.3
C03p80560 Brassica napus HOM05D002485 ORTHO05D002629 1.0e-06 56.6 69 39.1
BolC1t01790H Brassica oleracea HOM05D002485 ORTHO05D002629 1.0e-06 56.6 63 41.3
BraA01t01433Z Brassica rapa HOM05D002485 ORTHO05D002629 1.0e-06 56.6 63 41.3
MELO3C009795.2 Cucumis melo HOM05D002485 ORTHO05D002629 1.0e-06 56.6 69 36.2
CsaV3_3G040630 Cucumis sativus L. HOM05D002485 ORTHO05D002629 1.0e-06 56.6 69 36.2
Oeu042368.1 Olea europaea HOM05D002485 ORTHO05D002629 1.0e-06 56.6 65 41.5
QL03p004287 Quercus lobata HOM05D002485 ORTHO05D002629 1.0e-06 56.6 68 36.8
PGSC0003DMG400000893 Solanum tuberosum HOM05D002485 ORTHO05D002629 1.0e-06 56.6 68 36.8
FAN17G0602 Fragaria x ananassa HOM05D002485 ORTHO05D002629 1.3e-06 56.2 69 37.7
FAN17G1958 Fragaria x ananassa HOM05D002485 ORTHO05D002629 1.3e-06 56.2 69 37.7
FAN22G2077 Fragaria x ananassa HOM05D002485 ORTHO05D002629 1.3e-06 56.2 69 37.7
PGR031G0557 Punica granatum HOM05D002485 ORTHO05D002629 1.3e-06 56.2 68 39.7
Rhsim07G0086400 Rhododendron simsii HOM05D002485 ORTHO05D002629 1.3e-06 56.2 69 36.2
Solyc11g018560.2 Solanum lycopersicum HOM05D002485 ORTHO05D002629 1.3e-06 56.2 68 36.8
Sopen11g009530 Solanum pennellii HOM05D002485 ORTHO05D002629 1.3e-06 56.2 68 36.8
PSO541G6146 Papaver somniferum HOM05D002485 ORTHO05D002629 1.7e-06 55.8 54 50.0
Peaxi162Scf00515g00128 Petunia axillaris HOM05D002485 ORTHO05D002629 1.7e-06 55.8 68 36.8
RcHm_v2.0_Chr4g0408271 Rosa chinensis HOM05D002485 ORTHO05D002629 1.7e-06 55.8 69 36.2
CARHR230980 Cardamine hirsuta HOM05D002485 ORTHO05D002629 2.3e-06 55.5 64 43.8
DCAR_000640 Daucus carota HOM05D002485 ORTHO05D002629 2.3e-06 55.5 71 36.6
Manes.01G051500 Manihot esculenta HOM05D002485 ORTHO05D002629 2.3e-06 55.5 68 35.3
Thecc.03G307800 Theobroma cacao HOM05D002485 ORTHO05D002629 2.3e-06 55.5 68 35.3
Actinidia10618 Actinidia chinensis HOM05D002485 ORTHO05D002629 3.0e-06 55.1 69 39.1
MSTRG.13866 Avicennia marina HOM05D002485 ORTHO05D002629 3.0e-06 55.1 69 39.1
EL10Ac5g12848 Beta vulgaris HOM05D002485 ORTHO05D002629 3.0e-06 55.1 68 32.4
Cpa.g.sc122.7 Carica papaya HOM05D002485 ORTHO05D002629 3.0e-06 55.1 70 37.1
CiPaw.09G168400 Carya illinoinensis HOM05D002485 ORTHO05D002629 3.0e-06 55.1 68 33.8
Ca_08307_v3 Cicer arietinum L. HOM05D002485 ORTHO05D002629 3.0e-06 55.1 52 48.1
Sed0004945 Sechium edule HOM05D002485 ORTHO05D002629 3.0e-06 55.1 68 35.3
Sc22g0005280 Simmondsia chinensis HOM05D002485 ORTHO05D002629 3.0e-06 55.1 63 36.5
FvH4_4g11490 Fragaria vesca HOM05D002485 ORTHO05D002629 3.9e-06 54.7 69 36.2
Psat3g087240 Pisum sativum HOM05D002485 ORTHO05D002629 3.9e-06 54.7 52 46.2
Actinidia28332 Actinidia chinensis HOM05D002485 ORTHO05D002629 5.1e-06 54.3 69 37.7
Ciclev10021787m.g Citrus clementina HOM05D002485 ORTHO05D002629 5.1e-06 54.3 69 39.1
Gohir.A03G000043 Gossypium hirsutum HOM05D002485 ORTHO05D002629 5.1e-06 54.3 69 40.6
Gohir.D03G175300 Gossypium hirsutum HOM05D002485 ORTHO05D002629 5.1e-06 54.3 69 40.6
Gorai.003G184300 Gossypium raimondii HOM05D002485 ORTHO05D002629 5.1e-06 54.3 69 40.6
TPR.G17870 Trifolium pratense HOM05D002485 ORTHO05D002629 5.1e-06 54.3 52 44.2
A08p21930 Brassica napus HOM05D002485 ORTHO05D002629 6.6e-06 53.9 63 41.3
BraA08t34145Z Brassica rapa HOM05D002485 ORTHO05D002629 6.6e-06 53.9 63 41.3
Cc08_g15430 Coffea canephora HOM05D002485 ORTHO05D002629 6.6e-06 53.9 69 36.2
Lj1g0019498 Lotus japonicus HOM05D002485 ORTHO05D002629 6.6e-06 53.9 71 38.0
MD12G1010000 Malus domestica HOM05D002485 ORTHO05D002629 6.6e-06 53.9 68 33.8
vmacro13985 Vaccinium macrocarpon HOM05D002485 ORTHO05D002629 6.6e-06 53.9 69 33.3
BcaB03g12407 Brassica carinata HOM05D002485 ORTHO05D002629 8.6e-06 53.5 63 41.3
BcaC01g00488 Brassica carinata HOM05D002485 ORTHO05D002629 8.6e-06 53.5 63 39.7
C03p80540 Brassica napus HOM05D002485 ORTHO05D002629 8.6e-06 53.5 63 39.7
BolC3t20298H Brassica oleracea HOM05D002485 ORTHO05D002629 8.6e-06 53.5 63 39.7
AUR62021509 Chenopodium quinoa HOM05D002485 ORTHO05D002629 8.6e-06 53.5 69 36.2
Nitab4.5_0001018g0100 Nicotiana tabacum HOM05D002485 ORTHO05D002629 8.6e-06 53.5 68 33.8
PSO135G0521 Papaver somniferum HOM05D002485 ORTHO05D002629 8.6e-06 53.5 68 38.2
PSO384G4895 Papaver somniferum HOM05D002485 ORTHO05D002629 8.6e-06 53.5 68 38.2
PSO782G0236 Papaver somniferum HOM05D002485 ORTHO05D002629 8.6e-06 53.5 68 38.2


User provided reference genes

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