Gene: AT4G23620

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT4G23620
  • Transcript Identifier AT4G23620.1
  • Gene Type Coding gene
  • Location Chr4 : 12315016-12316659 : negative

Gene Family Information

  • ID HOM05D002485
  • #Genes/#Species 274/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT4G23620.1
  • uniprot Q9SUR4

Descriptions

  • Description Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain-containing protein
  • Computational description Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain; FUNCTIONS IN: cobalt ion binding, zinc ion binding; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L25, N-terminal (InterPro:IPR020055), Ribosomal protein L25 (InterPro:IPR001021), Ribosomal protein L25, beta domain (InterPro:IPR020057), Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain (InterPro:IPR011035); BEST Arabidopsis thaliana protein match is: Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain (TAIR:AT5G66860.1); Has 3887 Blast hits to 3887 proteins in 1083 species: Archae - 0; Bacteria - 2293; Metazoa - 0; Fungi - 0; Plants - 72; Viruses - 0; Other Eukaryotes - 1522 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006412
IBA
IEA
Gene Ontologytranslation1
GO:0006412
IEA
InterProtranslation

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003735
IEA
Gene Ontologystructural constituent of ribosome
GO:0003735
IEA
InterProstructural constituent of ribosome
GO:0008097
IBA
IEA
Gene Ontology5S rRNA binding1
GO:0008097
IEA
InterPro5S rRNA binding
GO:0008270
HDA
Gene Ontologyzinc ion binding2
GO:0050897
HDA
Gene Ontologycobalt ion binding2
GO:0004812
IEA
GOA Databaseaminoacyl-tRNA ligase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009507
ISM
Gene Ontologychloroplast
GO:0005829
HDA
Gene Ontologycytosol3
GO:0022625
IBA
Gene Ontologycytosolic large ribosomal subunit1
GO:0005840
IEA
GOA Databaseribosome
GO:0005840
IEA
InterProribosome

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain superfamily
IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, N-terminal
IPR029751 Ribosomal protein L25
IPR020057 Ribosomal protein L25, beta domain
IPR037121 Ribosomal protein L25, C-terminal
Mapman id Description
35.1 not assigned.annotated