Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj7C488G4 Lonicera japonica HOM05D005810 ORTHO05D007279 0.0e+00 1469.9 746 100.0
CSS0013071 Camellia sinensis var. sinensis HOM05D005810 ORTHO05D007279 4.0e-214 748.8 729 58.3
CSS0027419 Camellia sinensis var. sinensis HOM05D005810 ORTHO05D007279 4.5e-210 735.3 725 57.5
GSVIVG01021833001 Vitis vinifera HOM05D005810 ORTHO05D007279 2.5e-208 729.6 715 59.0
Cfa006452 Carpinus fangiana HOM05D005810 ORTHO05D007279 1.7e-204 716.8 734 56.0
QL03p024871 Quercus lobata HOM05D005810 ORTHO05D007279 3.9e-201 705.7 708 56.6
RcHm_v2.0_Chr3g0451831 Rosa chinensis HOM05D005810 ORTHO05D007279 1.1e-195 687.6 724 53.9
COL.COLO4_15299 Corchorus olitorius HOM05D005810 ORTHO05D007279 4.6e-194 682.2 721 54.2
Prupe.6G340900 Prunus persica HOM05D005810 ORTHO05D007279 4.6e-194 682.2 707 56.0
Potri.005G051400 Populus trichocarpa HOM05D005810 ORTHO05D007279 1.3e-193 680.6 713 53.7
Thecc.05G287300 Theobroma cacao HOM05D005810 ORTHO05D007279 6.6e-193 678.3 737 53.9
Duzib177G1000 Durio zibethinus HOM05D005810 ORTHO05D007279 4.3e-192 675.6 721 54.0
CANSAT54G2140 Cannabis sativa HOM05D005810 ORTHO05D007279 1.1e-190 671.0 713 53.0
FvH4_6g03330 Fragaria vesca HOM05D005810 ORTHO05D007279 1.8e-190 670.2 712 53.4
Migut.B01074 Erythranthe guttata HOM05D005810 ORTHO05D007279 2.3e-190 669.8 718 54.0
SalBow8G0563 Salvia bowleyana HOM05D005810 ORTHO05D007279 4.4e-189 665.6 719 53.7
DCAR_006618 Daucus carota HOM05D005810 ORTHO05D007279 7.5e-189 664.8 703 54.1
THA.LOC104821678 Tarenaya hassleriana HOM05D005810 ORTHO05D007279 7.5e-189 664.8 727 53.5
Ciclev10003382m.g Citrus clementina HOM05D005810 ORTHO05D007279 9.8e-189 664.5 719 53.8
Aqoxy5G00419 Aquilegia oxysepala HOM05D005810 ORTHO05D007279 7.8e-186 654.8 724 54.3
Gohir.A11G254200 Gossypium hirsutum HOM05D005810 ORTHO05D007279 7.8e-186 654.8 709 52.8
MD04G1221700 Malus domestica HOM05D005810 ORTHO05D007279 7.8e-186 654.8 708 53.7
Nitab4.5_0005059g0010 Nicotiana tabacum HOM05D005810 ORTHO05D007279 1.3e-185 654.1 730 53.0
Rhsim05G0160900 Rhododendron simsii HOM05D005810 ORTHO05D007279 3.0e-185 652.9 747 50.5
AL3G14980 Arabidopsis lyrata HOM05D005810 ORTHO05D007279 5.6e-184 648.7 701 53.8
AT3G04820 Arabidopsis thaliana HOM05D005810 ORTHO05D007279 8.1e-183 644.8 701 53.8
Gorai.007G284000 Gossypium raimondii HOM05D005810 ORTHO05D007279 8.1e-183 644.8 709 52.6
Aa31LG5G15210 Aethionema arabicum HOM05D005810 ORTHO05D007279 1.4e-182 644.0 765 50.1
Gohir.D11G264000 Gossypium hirsutum HOM05D005810 ORTHO05D007279 3.1e-182 642.9 709 52.5
Sed0015078 Sechium edule HOM05D005810 ORTHO05D007279 2.0e-181 640.2 695 52.5
Thhalv10022286m.g Eutrema salsugineum HOM05D005810 ORTHO05D007279 3.4e-181 639.4 680 53.5
CAN.G134.120 Capsicum annuum HOM05D005810 ORTHO05D007279 1.4e-179 634.0 679 55.2
Cpa.g.sc117.72 Carica papaya HOM05D005810 ORTHO05D007279 3.2e-179 632.9 730 52.9
MELO3C024669.2 Cucumis melo HOM05D005810 ORTHO05D007279 9.2e-179 631.3 702 51.0
Ca_09411_v3 Cicer arietinum L. HOM05D005810 ORTHO05D007279 1.2e-178 630.9 725 49.8
Sp3g03650 Schrenkiella parvula HOM05D005810 ORTHO05D007279 1.2e-178 630.9 735 51.2
Eucgr.B01694 Eucalyptus grandis HOM05D005810 ORTHO05D007279 1.6e-178 630.6 704 51.6
BraA03t12559Z Brassica rapa HOM05D005810 ORTHO05D007279 2.1e-178 630.2 708 52.5
A03p33850 Brassica napus HOM05D005810 ORTHO05D007279 3.5e-178 629.4 706 52.7
arahy.Tifrunner.gnm1.ann1.BBX725 Arachis hypogaea HOM05D005810 ORTHO05D007279 1.0e-177 627.9 719 51.2
BcaB04g19298 Brassica carinata HOM05D005810 ORTHO05D007279 1.7e-177 627.1 690 52.3
arahy.Tifrunner.gnm1.ann1.E80190 Arachis hypogaea HOM05D005810 ORTHO05D007279 2.3e-177 626.7 719 51.2
PGR031G1118 Punica granatum HOM05D005810 ORTHO05D007279 2.3e-177 626.7 702 51.0
BolC3t16404H Brassica oleracea HOM05D005810 ORTHO05D007279 3.0e-177 626.3 691 52.5
C03p41160 Brassica napus HOM05D005810 ORTHO05D007279 3.9e-177 625.9 689 52.5
CARHR079070 Cardamine hirsuta HOM05D005810 ORTHO05D007279 6.6e-177 625.2 697 52.4
BcaC01g04347 Brassica carinata HOM05D005810 ORTHO05D007279 8.6e-177 624.8 690 52.6
EL10Ac4g09107 Beta vulgaris HOM05D005810 ORTHO05D007279 4.7e-175 619.0 707 49.6
AUR62004921 Chenopodium quinoa HOM05D005810 ORTHO05D007279 8.1e-175 618.2 699 51.4
ClCG06G009190 Citrullus lanatus HOM05D005810 ORTHO05D007279 3.1e-174 616.3 705 50.4
PSO210G1835 Papaver somniferum HOM05D005810 ORTHO05D007279 4.0e-174 615.9 714 50.0
Medtr7g114850 Medicago truncatula HOM05D005810 ORTHO05D007279 6.8e-174 615.1 708 50.3
AUR62001034 Chenopodium quinoa HOM05D005810 ORTHO05D007279 1.5e-173 614.0 735 49.8
Peaxi162Scf00282g00136 Petunia axillaris HOM05D005810 ORTHO05D007279 3.4e-173 612.8 697 51.9
Glyma.03G245900 Glycine max HOM05D005810 ORTHO05D007279 5.8e-173 612.1 719 51.3
PSO832G3650 Papaver somniferum HOM05D005810 ORTHO05D007279 5.8e-173 612.1 730 50.3
MD12G1237800 Malus domestica HOM05D005810 ORTHO05D007279 1.3e-172 610.9 644 55.1
Lalb_Chr18g0045021 Lupinus albus HOM05D005810 ORTHO05D007279 1.9e-171 607.1 711 51.1
VMungo0222G0001 Vigna mungo HOM05D005810 ORTHO05D007279 9.3e-171 604.7 713 50.6
Phvul.006G100200 Phaseolus vulgaris HOM05D005810 ORTHO05D007279 6.0e-170 602.1 708 50.0
HanXRQChr12g0379621 Helianthus annuus HOM05D005810 ORTHO05D007279 2.3e-169 600.1 697 52.5
Lj1g0027742 Lotus japonicus HOM05D005810 ORTHO05D007279 2.3e-169 600.1 713 50.4
ECA232G3974 Erigeron canadensis HOM05D005810 ORTHO05D007279 5.1e-169 599.0 711 50.6
vmacro14215 Vaccinium macrocarpon HOM05D005810 ORTHO05D007279 8.7e-169 598.2 783 46.0
Psat3g008040 Pisum sativum HOM05D005810 ORTHO05D007279 9.6e-168 594.7 719 50.3
Ah.06g192190 Amaranthus hybridus HOM05D005810 ORTHO05D007279 3.6e-167 592.8 722 47.5
Glyma.19G243400 Glycine max HOM05D005810 ORTHO05D007279 3.1e-166 589.7 697 50.6
Carub.0003s0400 Capsella rubella HOM05D005810 ORTHO05D007279 1.7e-164 583.9 642 52.3
MBI11_g10322_MAGBIO Magnolia biondii HOM05D005810 ORTHO05D007279 6.6e-161 572.0 720 49.4
CDE05G3473 Ceratophyllum demersum HOM05D005810 ORTHO05D007279 3.4e-157 559.7 710 48.5
Lsat_1_v5_gn_5_37760 Lactuca sativa HOM05D005810 ORTHO05D007279 5.8e-157 558.9 605 54.2
ATR0665G477 Amborella trichopoda HOM05D005810 ORTHO05D007279 1.7e-156 557.4 713 47.4
HPP92_028013 Vanilla planifolia HOM05D005810 ORTHO05D007279 7.4e-152 542.0 687 47.3
CiPaw.07G064800 Carya illinoinensis HOM05D005810 ORTHO05D007279 5.3e-150 535.8 552 54.0
Hund06958 Selenicereus undatus HOM05D005810 ORTHO05D007279 1.6e-146 524.2 725 45.9
unitig_37.g12634 Utricularia gibba HOM05D005810 ORTHO05D007279 7.9e-146 521.9 695 44.9
FAN05G1843 Fragaria x ananassa HOM05D005810 ORTHO05D007279 1.6e-143 514.2 702 45.9
Sc09g0003830 Simmondsia chinensis HOM05D005810 ORTHO05D007279 4.8e-143 512.7 591 51.9
CsaV3_1G045590 Cucumis sativus L. HOM05D005810 ORTHO05D007279 1.4e-139 501.1 551 51.9
Manes.08G132300 Manihot esculenta HOM05D005810 ORTHO05D007279 3.9e-137 493.0 559 52.8
TPR.G6991 Trifolium pratense HOM05D005810 ORTHO05D007279 5.7e-136 489.2 576 49.5
Cc02_g31830 Coffea canephora HOM05D005810 ORTHO05D007279 3.6e-130 469.9 520 54.2
Manes.09G154600 Manihot esculenta HOM05D005810 ORTHO05D007279 6.7e-129 465.7 512 52.9
Atru.chr2.784 Acer truncatum HOM05D005810 ORTHO05D007279 6.3e-127 459.1 343 69.7
Haze_04339 Corylus avellana HOM05D005810 ORTHO05D007279 3.8e-124 449.9 358 66.2
Zm00001eb328420 Zea mays HOM05D005810 ORTHO05D007279 1.4e-123 448.0 716 40.6
TAR365G0727 Trochodendron aralioides HOM05D005810 ORTHO05D007279 6.7e-121 439.1 501 51.3
Solyc01g097600.2 Solanum lycopersicum HOM05D005810 ORTHO05D007279 3.1e-118 430.3 340 65.6
Sopen01g041230 Solanum pennellii HOM05D005810 ORTHO05D007279 1.3e-116 424.9 339 65.2
Mapoly0092s0013 Marchantia polymorpha HOM05D005810 ORTHO05D007279 1.4e-113 414.8 731 39.0
Pp3c18_8560 Physcomitrium patens HOM05D005810 ORTHO05D007279 1.4e-113 414.8 732 37.4
Dinv13659 Davidia involucrata HOM05D005810 ORTHO05D007279 1.8e-110 404.4 312 67.3
FAN05G0700 Fragaria x ananassa HOM05D005810 ORTHO05D007279 4.1e-110 403.3 330 63.3
FAN14G4259 Fragaria x ananassa HOM05D005810 ORTHO05D007279 2.0e-109 401.0 330 62.4
SMO351G0210 Selaginella moellendorffii HOM05D005810 ORTHO05D007279 3.8e-108 396.7 704 35.7
FAN02G1150 Fragaria x ananassa HOM05D005810 ORTHO05D007279 2.5e-107 394.0 330 62.1
Oeu060673.3 Olea europaea HOM05D005810 ORTHO05D007279 1.1e-94 352.1 753 36.5
Os05g0509300 Oryza sativa ssp. japonica HOM05D005810 ORTHO05D007279 1.6e-90 338.2 341 53.1
Zm00001eb352870 Zea mays HOM05D005810 ORTHO05D007279 8.0e-90 335.9 348 52.9
Eucgr.B02108 Eucalyptus grandis HOM05D005810 ORTHO05D007279 1.0e-89 335.5 506 42.1
Os01g0773000 Oryza sativa ssp. japonica HOM05D005810 ORTHO05D007279 4.3e-83 313.5 318 52.8
AagrBONN_evm.TU.Sc2ySwM_362.2883 Anthoceros agrestis HOM05D005810 ORTHO05D007279 1.2e-82 312.0 346 49.1
Dinv13660 Davidia involucrata HOM05D005810 ORTHO05D007279 1.2e-80 305.4 259 62.9
Haze_04340 Corylus avellana HOM05D005810 ORTHO05D007279 1.1e-75 288.9 250 61.6
SMO364G0521 Selaginella moellendorffii HOM05D005810 ORTHO05D007279 1.5e-72 278.5 687 30.9
MCO09G788 Micromonas commoda HOM05D005810 ORTHO05D007279 9.8e-72 275.8 772 31.3
CBR_g36821 Chara braunii HOM05D005810 ORTHO05D007279 1.9e-70 271.6 672 32.3
Nitab4.5_0005729g0070 Nicotiana tabacum HOM05D005810 ORTHO05D007279 2.3e-60 238.0 246 55.3
Nitab4.5_0005729g0060 Nicotiana tabacum HOM05D005810 ORTHO05D007279 1.6e-58 231.9 221 57.9
SGA_v2.0_scaffold92G28303 Striga asiatica HOM05D005810 ORTHO05D007279 1.4e-57 228.8 191 62.3
PRCOL_00005025 Prasinoderma coloniale HOM05D005810 ORTHO05D007279 4.8e-50 203.8 745 26.8
Cc02_g31840 Coffea canephora HOM05D005810 ORTHO05D007279 1.8e-49 201.8 200 57.0
Atru.chr2.785 Acer truncatum HOM05D005810 ORTHO05D007279 3.8e-47 194.1 154 63.0
Nitab4.5_0005729g0080 Nicotiana tabacum HOM05D005810 ORTHO05D007279 1.0e-44 186.0 225 51.6
TPR.G21485 Trifolium pratense HOM05D005810 ORTHO05D007279 9.3e-38 162.9 169 55.6
AagrBONN_evm.TU.Sc2ySwM_362.2882 Anthoceros agrestis HOM05D005810 ORTHO05D007279 3.9e-36 157.5 256 39.5
Cre01.g007651 Chlamydomonas reinhardtii HOM05D005810 ORTHO05D007279 3.2e-30 137.9 642 24.8
Sopen01g041220 Solanum pennellii HOM05D005810 ORTHO05D007279 6.7e-28 130.2 132 53.8
ClCG06G009160 Citrullus lanatus HOM05D005810 ORTHO05D007279 1.5e-27 129.0 145 46.9
Hma1.2p1_0083F.1_g042850 Hydrangea macrophylla HOM05D005810 ORTHO05D007279 9.7e-27 126.3 140 54.3
Zm00001eb054900 Zea mays HOM05D005810 ORTHO05D007279 4.1e-25 120.9 78 71.8
FAN09G1409 Fragaria x ananassa HOM05D005810 ORTHO05D007279 1.2e-24 119.4 156 49.4
CsaV3_UNG004060 Cucumis sativus L. HOM05D005810 ORTHO05D007279 4.5e-24 117.5 131 48.1
CsaV3_1G045610 Cucumis sativus L. HOM05D005810 ORTHO05D007279 5.0e-23 114.0 128 47.7
Zm00001eb281050 Zea mays HOM05D005810 ORTHO05D007279 1.6e-21 109.0 67 73.1
CsaV3_UNG004080 Cucumis sativus L. HOM05D005810 ORTHO05D007279 3.0e-20 104.8 103 51.5
MBI11_g02497_MAGBIO Magnolia biondii HOM05D005810 ORTHO05D007279 4.2e-14 84.3 78 59.0
Mapoly0081s0042 Marchantia polymorpha HOM05D005810 ORTHO05D007279 1.7e-10 72.4 51 60.8
Mapoly0027s0098 Marchantia polymorpha HOM05D005810 ORTHO05D007279 3.7e-10 71.2 76 47.4
Lsat_1_v5_gn_5_94521 Lactuca sativa HOM05D000428 ORTHO05D022850 1.5e-08 65.9 71 54.9
SHI07783 Sapria himalayana HOM05D000023 ORTHO05D000014 9.4e-06 56.6 77 42.9


User provided reference genes

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