Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj7A340T34 Lonicera japonica HOM05D005358 ORTHO05D006384 9.9e-147 523.5 273 100.0
Lju12250A0T27 Lonicera japonica HOM05D005358 ORTHO05D006384 9.9e-147 523.5 273 100.0
TWI34G1827 Tripterygium wilfordii HOM05D005358 ORTHO05D006384 3.7e-109 398.7 271 79.0
Prupe.1G497100 Prunus persica HOM05D005358 ORTHO05D006384 6.3e-109 397.9 279 77.4
CSS0039743 Camellia sinensis var. sinensis HOM05D005358 ORTHO05D006384 5.3e-108 394.8 271 80.8
DCAR_003551 Daucus carota HOM05D005358 ORTHO05D006384 5.3e-108 394.8 274 79.9
MD15G1348200 Malus domestica HOM05D005358 ORTHO05D006384 7.0e-108 394.4 278 77.0
FAN27G1910 Fragaria x ananassa HOM05D005358 ORTHO05D006384 9.1e-108 394.0 277 77.3
Dinv07219 Davidia involucrata HOM05D005358 ORTHO05D006384 1.5e-107 393.3 273 79.5
CSS0029272 Camellia sinensis var. sinensis HOM05D005358 ORTHO05D006384 2.0e-107 392.9 271 80.4
FAN20G2528 Fragaria x ananassa HOM05D005358 ORTHO05D006384 2.0e-107 392.9 277 77.6
GSVIVG01008866001 Vitis vinifera HOM05D005358 ORTHO05D006384 2.0e-107 392.9 274 80.3
FAN15G1035 Fragaria x ananassa HOM05D005358 ORTHO05D006384 4.5e-107 391.7 277 77.3
MD08G1162600 Malus domestica HOM05D005358 ORTHO05D006384 4.5e-107 391.7 278 77.0
Rhsim06G0103300 Rhododendron simsii HOM05D005358 ORTHO05D006384 4.5e-107 391.7 280 77.9
Cfa016019 Carpinus fangiana HOM05D005358 ORTHO05D006384 1.0e-106 390.6 273 79.1
Gohir.D01G180400 Gossypium hirsutum HOM05D005358 ORTHO05D006384 1.0e-106 390.6 278 78.1
Gorai.002G222200 Gossypium raimondii HOM05D005358 ORTHO05D006384 1.0e-106 390.6 278 78.1
Gohir.A01G189100 Gossypium hirsutum HOM05D005358 ORTHO05D006384 1.7e-106 389.8 278 78.1
CSS0043679 Camellia sinensis var. sinensis HOM05D005358 ORTHO05D006384 2.2e-106 389.4 270 80.0
CiPaw.06G031000 Carya illinoinensis HOM05D005358 ORTHO05D006384 2.2e-106 389.4 237 86.1
CiPaw.05G221300 Carya illinoinensis HOM05D005358 ORTHO05D006384 2.9e-106 389.0 270 79.3
Sed0008649 Sechium edule HOM05D005358 ORTHO05D006384 1.1e-105 387.1 275 74.9
Nn5g28290 Nelumbo nucifera HOM05D005358 ORTHO05D006384 1.4e-105 386.7 274 75.2
MBI16_g07664_MAGBIO Magnolia biondii HOM05D005358 ORTHO05D006384 2.5e-105 386.0 273 76.9
FAN24G1660 Fragaria x ananassa HOM05D005358 ORTHO05D006384 5.5e-105 384.8 277 76.5
PSO528G0145 Papaver somniferum HOM05D005358 ORTHO05D006384 5.5e-105 384.8 274 76.6
Eucgr.F03789 Eucalyptus grandis HOM05D005358 ORTHO05D006384 9.4e-105 384.0 272 76.8
Actinidia03469 Actinidia chinensis HOM05D005358 ORTHO05D006384 1.2e-104 383.6 269 79.9
RcHm_v2.0_Chr6g0295831 Rosa chinensis HOM05D005358 ORTHO05D006384 2.1e-104 382.9 280 75.7
vmacro12532 Vaccinium macrocarpon HOM05D005358 ORTHO05D006384 2.1e-104 382.9 269 79.6
CANSAT25G3496 Cannabis sativa HOM05D005358 ORTHO05D006384 2.7e-104 382.5 277 75.5
Cpa.g.sc64.88 Carica papaya HOM05D005358 ORTHO05D006384 2.7e-104 382.5 272 76.8
AT1G44575 Arabidopsis thaliana HOM05D005358 ORTHO05D006384 3.6e-104 382.1 271 76.8
Gohir.D05G237400 Gossypium hirsutum HOM05D005358 ORTHO05D006384 6.1e-104 381.3 271 76.8
Lsat_1_v5_gn_6_35480 Lactuca sativa HOM05D005358 ORTHO05D006384 6.1e-104 381.3 269 77.0
Gorai.009G245800 Gossypium raimondii HOM05D005358 ORTHO05D006384 8.0e-104 380.9 271 76.8
Gohir.A05G235100 Gossypium hirsutum HOM05D005358 ORTHO05D006384 1.0e-103 380.6 272 76.5
Sabra02G0065500 Salix brachista HOM05D005358 ORTHO05D006384 1.4e-103 380.2 273 75.8
Cc10_g11890 Coffea canephora HOM05D005358 ORTHO05D006384 1.8e-103 379.8 272 76.1
ECA233G3168 Erigeron canadensis HOM05D005358 ORTHO05D006384 1.8e-103 379.8 259 80.3
PGR042G4000 Punica granatum HOM05D005358 ORTHO05D006384 1.8e-103 379.8 280 73.9
HanXRQChr02g0053151 Helianthus annuus HOM05D005358 ORTHO05D006384 3.0e-103 379.0 271 77.5
Duzib093G1131 Durio zibethinus HOM05D005358 ORTHO05D006384 3.9e-103 378.6 276 75.4
FvH4_2g26970 Fragaria vesca HOM05D005358 ORTHO05D006384 3.9e-103 378.6 225 85.8
THA.LOC104817350 Tarenaya hassleriana HOM05D005358 ORTHO05D006384 3.9e-103 378.6 215 88.4
Duzib116G0356 Durio zibethinus HOM05D005358 ORTHO05D006384 6.7e-103 377.9 276 77.5
Aa31LG6G9330 Aethionema arabicum HOM05D005358 ORTHO05D006384 1.1e-102 377.1 272 76.1
BcaB04g17587 Brassica carinata HOM05D005358 ORTHO05D006384 1.1e-102 377.1 271 76.0
Sc01g0006700 Simmondsia chinensis HOM05D005358 ORTHO05D006384 1.1e-102 377.1 269 74.7
Carub.0001s3521 Capsella rubella HOM05D005358 ORTHO05D006384 1.5e-102 376.7 271 76.4
Thecc.08G125500 Theobroma cacao HOM05D005358 ORTHO05D006384 1.5e-102 376.7 274 77.0
COL.COLO4_08077 Corchorus olitorius HOM05D005358 ORTHO05D006384 2.0e-102 376.3 277 75.1
CARHR035950 Cardamine hirsuta HOM05D005358 ORTHO05D006384 4.4e-102 375.2 271 75.6
Atru.chr13.1462 Acer truncatum HOM05D005358 ORTHO05D006384 5.7e-102 374.8 277 77.3
Atru.chr13.1484 Acer truncatum HOM05D005358 ORTHO05D006384 5.7e-102 374.8 277 77.3
ATR0584G037 Amborella trichopoda HOM05D005358 ORTHO05D006384 7.4e-102 374.4 215 87.4
MELO3C010608.2 Cucumis melo HOM05D005358 ORTHO05D006384 7.4e-102 374.4 277 74.0
HanXRQChr02g0053161 Helianthus annuus HOM05D005358 ORTHO05D006384 7.4e-102 374.4 271 75.6
QL09p034583 Quercus lobata HOM05D005358 ORTHO05D006384 7.4e-102 374.4 241 82.2
Lalb_Chr11g0065911 Lupinus albus HOM05D005358 ORTHO05D006384 9.7e-102 374.0 272 73.2
Sp1g33560 Schrenkiella parvula HOM05D005358 ORTHO05D006384 9.7e-102 374.0 271 75.6
CsaV3_6G034480 Cucumis sativus L. HOM05D005358 ORTHO05D006384 1.3e-101 373.6 277 73.6
TAR628G0971 Trochodendron aralioides HOM05D005358 ORTHO05D006384 1.7e-101 373.2 276 75.0
AL1G52370 Arabidopsis lyrata HOM05D005358 ORTHO05D006384 2.2e-101 372.9 268 76.1
Lj1g0002097 Lotus japonicus HOM05D005358 ORTHO05D006384 2.2e-101 372.9 269 75.5
Migut.C01123 Erythranthe guttata HOM05D005358 ORTHO05D006384 2.8e-101 372.5 273 74.4
Solyc06g060340.3 Solanum lycopersicum HOM05D005358 ORTHO05D006384 3.7e-101 372.1 279 74.6
A08p06370 Brassica napus HOM05D005358 ORTHO05D006384 4.8e-101 371.7 271 75.3
BraA08t32644Z Brassica rapa HOM05D005358 ORTHO05D006384 4.8e-101 371.7 271 75.3
Sopen06g020470 Solanum pennellii HOM05D005358 ORTHO05D006384 4.8e-101 371.7 279 74.2
BcaB07g33947 Brassica carinata HOM05D005358 ORTHO05D006384 6.3e-101 371.3 273 75.1
BcaC07g37296 Brassica carinata HOM05D005358 ORTHO05D006384 6.3e-101 371.3 271 75.3
BolC8t47572H Brassica oleracea HOM05D005358 ORTHO05D006384 6.3e-101 371.3 271 75.3
BcaC08g42851 Brassica carinata HOM05D005358 ORTHO05D006384 1.4e-100 370.2 273 75.1
A10p07510 Brassica napus HOM05D005358 ORTHO05D006384 1.4e-100 370.2 273 75.1
C06p00660 Brassica napus HOM05D005358 ORTHO05D006384 1.4e-100 370.2 273 75.1
ClCG08G005640 Citrullus lanatus HOM05D005358 ORTHO05D006384 1.4e-100 370.2 275 73.1
TAR376G0195 Trochodendron aralioides HOM05D005358 ORTHO05D006384 1.4e-100 370.2 267 74.9
HPP92_025043 Vanilla planifolia HOM05D005358 ORTHO05D006384 1.4e-100 370.2 220 85.0
C08p07310 Brassica napus HOM05D005358 ORTHO05D006384 1.8e-100 369.8 270 75.2
BraSC36t46054Z Brassica rapa HOM05D005358 ORTHO05D006384 1.8e-100 369.8 271 75.3
Sabra05G0134400 Salix brachista HOM05D005358 ORTHO05D006384 2.4e-100 369.4 273 74.7
CAN.G1040.10 Capsicum annuum HOM05D005358 ORTHO05D006384 3.1e-100 369.0 281 74.7
PSO170G3857 Papaver somniferum HOM05D005358 ORTHO05D006384 4.1e-100 368.6 274 74.1
BolC6t35202H Brassica oleracea HOM05D005358 ORTHO05D006384 5.3e-100 368.2 273 74.7
Oeu028563.1 Olea europaea HOM05D005358 ORTHO05D006384 5.3e-100 368.2 272 74.3
Migut.N03279 Erythranthe guttata HOM05D005358 ORTHO05D006384 7.0e-100 367.9 272 73.9
Nitab4.5_0000322g0160 Nicotiana tabacum HOM05D005358 ORTHO05D006384 7.0e-100 367.9 275 72.7
PGSC0003DMG400017556 Solanum tuberosum HOM05D005358 ORTHO05D006384 1.2e-99 367.1 279 73.1
Aqoxy6G00218 Aquilegia oxysepala HOM05D005358 ORTHO05D006384 2.6e-99 365.9 273 73.3
arahy.Tifrunner.gnm1.ann1.L9FPHH Arachis hypogaea HOM05D005358 ORTHO05D006384 5.9e-99 364.8 275 73.8
Potri.002G083500 Populus trichocarpa HOM05D005358 ORTHO05D006384 5.9e-99 364.8 275 75.3
Psat5g087360 Pisum sativum HOM05D005358 ORTHO05D006384 1.3e-98 363.6 271 72.7
Thhalv10011718m.g Eutrema salsugineum HOM05D005358 ORTHO05D006384 2.9e-98 362.5 268 75.0
SGA_v2.0_scaffold25G11130 Striga asiatica HOM05D005358 ORTHO05D006384 1.5e-97 360.1 252 76.2
Ciclev10002099m.g Citrus clementina HOM05D005358 ORTHO05D006384 3.2e-97 359.0 280 72.9
Medtr3g088040 Medicago truncatula HOM05D005358 ORTHO05D006384 3.2e-97 359.0 272 72.4
Oeu059439.1 Olea europaea HOM05D005358 ORTHO05D006384 7.2e-97 357.8 271 73.1
SEGI_26351 Sequoiadendron giganteum HOM05D005358 ORTHO05D006384 7.2e-97 357.8 236 80.5
Hund26809 Selenicereus undatus HOM05D005358 ORTHO05D006384 9.4e-97 357.5 277 71.5
CDE02G0325 Ceratophyllum demersum HOM05D005358 ORTHO05D006384 2.1e-96 356.3 217 82.5
AUR62019079 Chenopodium quinoa HOM05D005358 ORTHO05D006384 6.1e-96 354.8 197 88.8
Nitab4.5_0004044g0020 Nicotiana tabacum HOM05D005358 ORTHO05D006384 2.3e-95 352.8 205 86.3
Os04g0690800 Oryza sativa ssp. japonica HOM05D005358 ORTHO05D006384 2.3e-95 352.8 219 82.6
Os01g0869800 Oryza sativa ssp. japonica HOM05D005358 ORTHO05D006384 3.0e-95 352.4 273 72.2
TPR.G21057 Trifolium pratense HOM05D005358 ORTHO05D006384 3.0e-95 352.4 271 71.2
VMungo1309G1077 Vigna mungo HOM05D005358 ORTHO05D006384 8.8e-95 350.9 268 73.1
MSTRG.22407 Avicennia marina HOM05D005358 ORTHO05D006384 1.5e-94 350.1 271 73.4
unitig_46.g18102 Utricularia gibba HOM05D005358 ORTHO05D006384 1.5e-94 350.1 267 69.7
SalBow6G1113 Salvia bowleyana HOM05D005358 ORTHO05D006384 1.7e-93 346.7 250 75.2
arahy.Tifrunner.gnm1.ann1.QP7RRL Arachis hypogaea HOM05D005358 ORTHO05D006384 2.2e-93 346.3 275 71.3
Glyma.04G249700 Glycine max HOM05D005358 ORTHO05D006384 2.8e-93 345.9 277 72.2
Glyma.06G113200 Glycine max HOM05D005358 ORTHO05D006384 2.4e-92 342.8 280 71.4
Phvul.009G125100 Phaseolus vulgaris HOM05D005358 ORTHO05D006384 2.7e-91 339.3 273 70.0
Peaxi162Scf00051g00910 Petunia axillaris HOM05D005358 ORTHO05D006384 4.5e-91 338.6 271 69.0
Zm00001eb146510 Zea mays HOM05D005358 ORTHO05D006384 5.0e-90 335.1 193 86.0
Pp3c20_23430 Physcomitrium patens HOM05D005358 ORTHO05D006384 1.2e-86 323.9 270 65.6
Mapoly0013s0199 Marchantia polymorpha HOM05D005358 ORTHO05D006384 3.5e-83 312.4 220 72.7
SMO146G0179 Selaginella moellendorffii HOM05D005358 ORTHO05D006384 2.9e-82 309.3 196 78.6
AagrBONN_evm.TU.Sc2ySwM_368.1869 Anthoceros agrestis HOM05D005358 ORTHO05D006384 1.6e-80 303.5 215 71.6
AUR62014337 Chenopodium quinoa HOM05D005358 ORTHO05D006384 1.8e-76 290.0 169 84.6
CDE08G0239 Ceratophyllum demersum HOM05D005358 ORTHO05D006384 5.4e-76 288.5 200 76.5
Haze_00439 Corylus avellana HOM05D005358 ORTHO05D006384 6.0e-67 258.5 160 83.1
Dinv27311 Davidia involucrata HOM05D005358 ORTHO05D006384 1.6e-64 250.4 192 76.6
Ah.05g171100 Amaranthus hybridus HOM05D005358 ORTHO05D006384 1.8e-63 246.9 134 91.0
Manes.18G077312 Manihot esculenta HOM05D005358 ORTHO05D006384 6.4e-61 238.4 150 82.7
CBR_g29877 Chara braunii HOM05D005358 ORTHO05D006384 1.2e-59 234.2 160 70.6
Ca_16558_v3 Cicer arietinum L. HOM05D005358 ORTHO05D006384 5.2e-55 218.8 197 65.0
CBR_g40031 Chara braunii HOM05D005358 ORTHO05D006384 2.0e-54 216.9 165 64.8
EL10Ac1g01011 Beta vulgaris HOM05D005358 ORTHO05D006384 3.6e-48 196.1 271 50.2
CDE06G0290 Ceratophyllum demersum HOM05D005358 ORTHO05D006384 3.5e-43 179.5 125 73.6
Actinidia29466 Actinidia chinensis HOM05D005358 ORTHO05D006384 6.2e-40 168.7 151 72.8
EL10Ac5g12375 Beta vulgaris HOM05D005358 ORTHO05D006384 1.2e-38 164.5 96 80.2
Glyma.13G078900 Glycine max HOM05D004548 ORTHO05D005402 4.4e-38 162.5 229 49.3
Cre01.g016750 Chlamydomonas reinhardtii HOM05D005358 ORTHO05D006384 1.3e-37 161.0 213 47.4
Cre01.g016600 Chlamydomonas reinhardtii HOM05D005358 ORTHO05D006384 2.9e-37 159.8 230 45.2
FAN08G1189 Fragaria x ananassa HOM05D005358 ORTHO05D006384 6.9e-23 112.1 81 77.8
Ah.05g171090 Amaranthus hybridus HOM05D007226 ORTHO05D009160 1.2e-14 84.7 108 53.7
Cre03.g146147 Chlamydomonas reinhardtii HOM05D005358 ORTHO05D006384 4.6e-11 72.8 147 34.7
PRCOL_00001561 Prasinoderma coloniale HOM05D005358 ORTHO05D006384 6.1e-11 72.4 175 31.4
MELO3C030542.2 Cucumis melo HOM05D005358 ORTHO05D006384 1.1e-07 61.6 35 82.9
MELO3C031367.2 Cucumis melo HOM05D005358 ORTHO05D006384 5.3e-07 59.3 35 82.9
MCO14G314 Micromonas commoda HOM05D005358 ORTHO05D006384 5.3e-07 59.3 60 48.3
Pp3c11_21590 Physcomitrium patens HOM05D041339 ORTHO05D031170 5.3e-07 59.3 99 41.4
Pp3c7_6810 Physcomitrium patens HOM05D041339 ORTHO05D031170 6.9e-07 58.9 99 41.4


User provided reference genes

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