Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj7A271T27 Lonicera japonica HOM05D003066 ORTHO05D004162 3.8e-128 461.5 224 100.0
TWI32G0839 Tripterygium wilfordii HOM05D003066 ORTHO05D004162 5.3e-114 414.5 235 86.8
Nn8g38884 Nelumbo nucifera HOM05D003066 ORTHO05D004162 9.1e-114 413.7 235 85.5
Prupe.1G412100 Prunus persica HOM05D003066 ORTHO05D004162 3.5e-113 411.8 235 85.1
TWI34G1165 Tripterygium wilfordii HOM05D003066 ORTHO05D004162 3.5e-113 411.8 235 85.1
Actinidia18185 Actinidia chinensis HOM05D003066 ORTHO05D004162 1.3e-112 409.8 235 84.7
MD15G1060200 Malus domestica HOM05D003066 ORTHO05D004162 1.7e-112 409.5 235 85.1
CSS0037920 Camellia sinensis var. sinensis HOM05D003066 ORTHO05D004162 2.2e-112 409.1 235 84.7
MELO3C010754.2 Cucumis melo HOM05D003066 ORTHO05D004162 2.2e-112 409.1 235 84.3
Hma1.2p1_0482F.1_g162430 Hydrangea macrophylla HOM05D003066 ORTHO05D004162 2.2e-112 409.1 237 85.2
CSS0005439 Camellia sinensis var. sinensis HOM05D003066 ORTHO05D004162 6.5e-112 407.5 235 84.3
Ca_13165_v3 Cicer arietinum L. HOM05D003066 ORTHO05D004162 6.5e-112 407.5 235 83.8
Sabra06G0177800 Salix brachista HOM05D003066 ORTHO05D004162 6.5e-112 407.5 235 84.7
arahy.Tifrunner.gnm1.ann1.9IV7G6 Arachis hypogaea HOM05D003066 ORTHO05D004162 8.5e-112 407.1 235 84.3
arahy.Tifrunner.gnm1.ann1.W9U8CY Arachis hypogaea HOM05D003066 ORTHO05D004162 8.5e-112 407.1 235 84.3
Eucgr.C00646 Eucalyptus grandis HOM05D003066 ORTHO05D004162 1.5e-111 406.4 235 83.4
PGR031G0611 Punica granatum HOM05D003066 ORTHO05D004162 2.5e-111 405.6 235 83.8
CSS0003286 Camellia sinensis var. sinensis HOM05D003066 ORTHO05D004162 3.2e-111 405.2 235 84.3
Gohir.D05G044000 Gossypium hirsutum HOM05D003066 ORTHO05D004162 3.2e-111 405.2 235 83.0
Lj5g0020573 Lotus japonicus HOM05D003066 ORTHO05D004162 3.2e-111 405.2 235 83.8
Rhsim11G0044200 Rhododendron simsii HOM05D003066 ORTHO05D004162 3.2e-111 405.2 235 83.8
Thecc.09G053700 Theobroma cacao HOM05D003066 ORTHO05D004162 3.2e-111 405.2 235 83.0
ClCG08G017010 Citrullus lanatus HOM05D003066 ORTHO05D004162 4.2e-111 404.8 235 83.4
Ciclev10007310m.g Citrus clementina HOM05D003066 ORTHO05D004162 5.5e-111 404.4 235 83.8
Dinv27984 Davidia involucrata HOM05D003066 ORTHO05D004162 7.2e-111 404.1 235 84.3
QL02p001223 Quercus lobata HOM05D003066 ORTHO05D004162 7.2e-111 404.1 234 83.8
Sed0010471 Sechium edule HOM05D003066 ORTHO05D004162 7.2e-111 404.1 235 82.6
CiPaw.15G039000 Carya illinoinensis HOM05D003066 ORTHO05D004162 9.4e-111 403.7 235 83.4
Duzib187G0606 Durio zibethinus HOM05D003066 ORTHO05D004162 9.4e-111 403.7 235 82.6
Migut.A00136 Erythranthe guttata HOM05D003066 ORTHO05D004162 9.4e-111 403.7 235 83.0
FAN20G2891 Fragaria x ananassa HOM05D003066 ORTHO05D004162 9.4e-111 403.7 235 84.3
MD08G1061500 Malus domestica HOM05D003066 ORTHO05D004162 9.4e-111 403.7 235 84.7
Cpa.g.sc7.178 Carica papaya HOM05D003066 ORTHO05D004162 1.2e-110 403.3 238 81.9
MBI04_g34129_MAGBIO Magnolia biondii HOM05D003066 ORTHO05D004162 1.2e-110 403.3 235 83.0
Psat6g020400 Pisum sativum HOM05D003066 ORTHO05D004162 1.2e-110 403.3 235 82.6
VMungo0647G0915 Vigna mungo HOM05D003066 ORTHO05D004162 1.2e-110 403.3 235 83.4
CSS0010005 Camellia sinensis var. sinensis HOM05D003066 ORTHO05D004162 1.6e-110 402.9 235 83.8
Duzib168G0564 Durio zibethinus HOM05D003066 ORTHO05D004162 2.1e-110 402.5 235 83.0
Glyma.14G094700 Glycine max HOM05D003066 ORTHO05D004162 2.1e-110 402.5 235 83.0
Duzib150G0748 Durio zibethinus HOM05D003066 ORTHO05D004162 2.7e-110 402.1 235 83.0
FvH4_2g31940 Fragaria vesca HOM05D003066 ORTHO05D004162 2.7e-110 402.1 235 84.3
FAN15G2565 Fragaria x ananassa HOM05D003066 ORTHO05D004162 2.7e-110 402.1 235 83.8
FAN24G0169 Fragaria x ananassa HOM05D003066 ORTHO05D004162 2.7e-110 402.1 235 84.3
Manes.16G080300 Manihot esculenta HOM05D003066 ORTHO05D004162 2.7e-110 402.1 235 84.3
Rhsim07G0142300 Rhododendron simsii HOM05D003066 ORTHO05D004162 2.7e-110 402.1 232 84.5
Lalb_Chr23g0267761 Lupinus albus HOM05D003066 ORTHO05D004162 3.6e-110 401.7 235 82.6
MBI01_g09957_MAGBIO Magnolia biondii HOM05D003066 ORTHO05D004162 3.6e-110 401.7 234 83.3
GSVIVG01035408001 Vitis vinifera HOM05D003066 ORTHO05D004162 3.6e-110 401.7 235 83.4
Lalb_Chr14g0367671 Lupinus albus HOM05D003066 ORTHO05D004162 4.7e-110 401.4 235 82.6
RcHm_v2.0_Chr6g0310901 Rosa chinensis HOM05D003066 ORTHO05D004162 4.7e-110 401.4 235 84.3
vmacro00142 Vaccinium macrocarpon HOM05D003066 ORTHO05D004162 4.7e-110 401.4 232 83.2
Cfa017953 Carpinus fangiana HOM05D003066 ORTHO05D004162 6.1e-110 401.0 235 83.4
TAR383G0156 Trochodendron aralioides HOM05D003066 ORTHO05D004162 6.1e-110 401.0 235 83.0
Gohir.A06G089300 Gossypium hirsutum HOM05D003066 ORTHO05D004162 1.0e-109 400.2 235 82.1
Gorai.010G101200 Gossypium raimondii HOM05D003066 ORTHO05D004162 1.0e-109 400.2 235 82.1
THA.LOC104803730 Tarenaya hassleriana HOM05D003066 ORTHO05D004162 1.0e-109 400.2 235 83.0
TPR.G13011 Trifolium pratense HOM05D003066 ORTHO05D004162 1.0e-109 400.2 235 82.1
Aqoxy7G01226 Aquilegia oxysepala HOM05D003066 ORTHO05D004162 1.4e-109 399.8 235 82.1
MSTRG.14054 Avicennia marina HOM05D003066 ORTHO05D004162 1.4e-109 399.8 235 81.3
MSTRG.1683 Avicennia marina HOM05D003066 ORTHO05D004162 1.4e-109 399.8 232 81.9
Gohir.A05G042300 Gossypium hirsutum HOM05D003066 ORTHO05D004162 1.4e-109 399.8 235 82.1
TAR626G0016 Trochodendron aralioides HOM05D003066 ORTHO05D004162 1.4e-109 399.8 235 82.6
Glyma.17G228800 Glycine max HOM05D003066 ORTHO05D004162 2.3e-109 399.1 235 82.1
Potri.006G229300 Populus trichocarpa HOM05D003066 ORTHO05D004162 2.3e-109 399.1 235 83.4
CDE06G2405 Ceratophyllum demersum HOM05D003066 ORTHO05D004162 3.0e-109 398.7 236 83.5
DCAR_003129 Daucus carota HOM05D003066 ORTHO05D004162 3.0e-109 398.7 235 82.6
Phvul.001G035500 Phaseolus vulgaris HOM05D003066 ORTHO05D004162 3.0e-109 398.7 235 81.7
Aa31LG5G9680 Aethionema arabicum HOM05D003066 ORTHO05D004162 4.0e-109 398.3 234 82.9
CDE07G0857 Ceratophyllum demersum HOM05D003066 ORTHO05D004162 4.0e-109 398.3 236 83.5
Cc08_g10590 Coffea canephora HOM05D003066 ORTHO05D004162 5.2e-109 397.9 235 82.6
FAN27G1891 Fragaria x ananassa HOM05D003066 ORTHO05D004162 5.2e-109 397.9 235 83.0
THA.LOC104799166 Tarenaya hassleriana HOM05D003066 ORTHO05D004162 6.7e-109 397.5 235 81.3
HPP92_006466 Vanilla planifolia HOM05D003066 ORTHO05D004162 6.7e-109 397.5 235 81.7
Gohir.D06G087600 Gossypium hirsutum HOM05D003066 ORTHO05D004162 8.8e-109 397.1 235 81.3
Medtr1g016230 Medicago truncatula HOM05D003066 ORTHO05D004162 8.8e-109 397.1 235 81.7
PSO210G2602 Papaver somniferum HOM05D003066 ORTHO05D004162 1.1e-108 396.7 235 81.3
PSO210G3975 Papaver somniferum HOM05D003066 ORTHO05D004162 1.1e-108 396.7 235 81.3
COL.COLO4_21057 Corchorus olitorius HOM05D003066 ORTHO05D004162 2.6e-108 395.6 235 81.3
Hund03339 Selenicereus undatus HOM05D003066 ORTHO05D004162 4.4e-108 394.8 231 82.3
CARHR114810 Cardamine hirsuta HOM05D003066 ORTHO05D004162 7.5e-108 394.0 232 83.2
Oeu003985.1 Olea europaea HOM05D003066 ORTHO05D004162 9.7e-108 393.7 235 80.9
Migut.E01566 Erythranthe guttata HOM05D003066 ORTHO05D004162 1.3e-107 393.3 235 81.3
Thhalv10001891m.g Eutrema salsugineum HOM05D003066 ORTHO05D004162 2.2e-107 392.5 234 82.5
Sp4g05960 Schrenkiella parvula HOM05D003066 ORTHO05D004162 2.2e-107 392.5 234 82.1
Ah.10g034390 Amaranthus hybridus HOM05D003066 ORTHO05D004162 2.8e-107 392.1 231 82.3
Zm00001eb406880 Zea mays HOM05D003066 ORTHO05D004162 2.8e-107 392.1 234 81.6
Eucgr.C03047 Eucalyptus grandis HOM05D003066 ORTHO05D004162 3.7e-107 391.7 235 80.0
Peaxi162Scf00477g00214 Petunia axillaris HOM05D003066 ORTHO05D004162 4.8e-107 391.3 236 80.1
SalBow1G0202 Salvia bowleyana HOM05D003066 ORTHO05D004162 6.3e-107 391.0 235 80.0
AUR62022077 Chenopodium quinoa HOM05D003066 ORTHO05D004162 1.1e-106 390.2 231 80.5
QL02p062818 Quercus lobata HOM05D003066 ORTHO05D004162 1.4e-106 389.8 230 81.3
Glyma.04G051200 Glycine max HOM05D003066 ORTHO05D004162 2.4e-106 389.0 235 80.4
CANSAT25G3853 Cannabis sativa HOM05D003066 ORTHO05D004162 3.1e-106 388.7 235 80.4
AT2G26080 Arabidopsis thaliana HOM05D003066 ORTHO05D004162 4.1e-106 388.3 232 82.3
CAN.G208.91 Capsicum annuum HOM05D003066 ORTHO05D004162 4.1e-106 388.3 231 79.2
HanXRQChr17g0538191 Helianthus annuus HOM05D003066 ORTHO05D004162 7.0e-106 387.5 235 80.4
Os01g0711400 Oryza sativa ssp. japonica HOM05D003066 ORTHO05D004162 7.0e-106 387.5 235 80.0
Solyc08g065220.3 Solanum lycopersicum HOM05D003066 ORTHO05D004162 7.0e-106 387.5 231 79.2
PGSC0003DMG400029938 Solanum tuberosum HOM05D003066 ORTHO05D004162 7.0e-106 387.5 231 79.2
Glyma.06G052100 Glycine max HOM05D003066 ORTHO05D004162 1.2e-105 386.7 235 80.0
vmacro14247 Vaccinium macrocarpon HOM05D003066 ORTHO05D004162 1.2e-105 386.7 257 76.7
ATR0749G006 Amborella trichopoda HOM05D003066 ORTHO05D004162 1.6e-105 386.3 235 80.0
CAN.G117.1 Capsicum annuum HOM05D003066 ORTHO05D004162 2.0e-105 386.0 231 78.8
Os06g0611900 Oryza sativa ssp. japonica HOM05D003066 ORTHO05D004162 2.0e-105 386.0 235 79.6
AL4G18230 Arabidopsis lyrata HOM05D003066 ORTHO05D004162 2.7e-105 385.6 232 81.5
Nitab4.5_0001367g0020 Nicotiana tabacum HOM05D003066 ORTHO05D004162 2.7e-105 385.6 246 76.8
Sopen08g018830 Solanum pennellii HOM05D003066 ORTHO05D004162 2.7e-105 385.6 231 78.8
AUR62009150 Chenopodium quinoa HOM05D003066 ORTHO05D004162 4.5e-105 384.8 231 79.2
Nitab4.5_0003627g0010 Nicotiana tabacum HOM05D003066 ORTHO05D004162 1.0e-104 383.6 246 76.4
EL10Ac2g03886 Beta vulgaris HOM05D003066 ORTHO05D004162 1.3e-104 383.3 232 79.3
ECA246G1238 Erigeron canadensis HOM05D003066 ORTHO05D004162 1.3e-104 383.3 235 80.0
HanXRQChr13g0410471 Helianthus annuus HOM05D003066 ORTHO05D004162 1.3e-104 383.3 235 80.4
Lsat_1_v5_gn_5_45900 Lactuca sativa HOM05D003066 ORTHO05D004162 1.3e-104 383.3 235 80.4
GSVIVG01015211001 Vitis vinifera HOM05D003066 ORTHO05D004162 2.9e-104 382.1 236 80.1
AL7G18660 Arabidopsis lyrata HOM05D003066 ORTHO05D004162 3.8e-104 381.7 232 81.0
AT4G33010 Arabidopsis thaliana HOM05D003066 ORTHO05D004162 3.8e-104 381.7 232 81.0
unitig_26.g9798 Utricularia gibba HOM05D003066 ORTHO05D004162 3.8e-104 381.7 236 78.4
Lsat_1_v5_gn_3_24441 Lactuca sativa HOM05D003066 ORTHO05D004162 5.0e-104 381.3 235 80.0
unitig_749.g13830 Utricularia gibba HOM05D003066 ORTHO05D004162 5.0e-104 381.3 234 77.8
ECA240G4675 Erigeron canadensis HOM05D003066 ORTHO05D004162 6.5e-104 380.9 235 80.9
Hund19452 Selenicereus undatus HOM05D003066 ORTHO05D004162 6.5e-104 380.9 235 79.6
Thhalv10024257m.g Eutrema salsugineum HOM05D003066 ORTHO05D004162 1.1e-103 380.2 232 80.2
HanXRQChr06g0173861 Helianthus annuus HOM05D003066 ORTHO05D004162 9.4e-103 377.1 235 78.7
CARHR241020 Cardamine hirsuta HOM05D003066 ORTHO05D004162 1.6e-102 376.3 232 79.7
Sp7g30770 Schrenkiella parvula HOM05D003066 ORTHO05D004162 8.0e-102 374.0 234 78.6
VMungo1309G0513 Vigna mungo HOM05D003066 ORTHO05D004162 1.0e-101 373.6 235 75.7
Phvul.009G077400 Phaseolus vulgaris HOM05D003066 ORTHO05D004162 3.7e-99 365.2 221 77.8
Carub.0004s0590 Capsella rubella HOM05D003066 ORTHO05D004162 3.1e-98 362.1 232 77.2
Lj7C275T3 Lonicera japonica HOM05D003066 ORTHO05D004162 9.1e-98 360.5 235 79.1
Gorai.009G045100 Gossypium raimondii HOM05D003066 ORTHO05D004162 1.6e-97 359.8 210 82.4
Carub.0007s0747 Capsella rubella HOM05D003066 ORTHO05D004162 2.7e-97 359.0 232 76.7
A01p05180 Brassica napus HOM05D003066 ORTHO05D004162 1.0e-96 357.1 232 75.0
BraA01t00501Z Brassica rapa HOM05D003066 ORTHO05D004162 1.0e-96 357.1 232 75.0
BcaC09g52098 Brassica carinata HOM05D003066 ORTHO05D004162 1.7e-96 356.3 232 75.0
C01p05670 Brassica napus HOM05D003066 ORTHO05D004162 1.7e-96 356.3 232 75.0
BolC1t00546H Brassica oleracea HOM05D003066 ORTHO05D004162 1.7e-96 356.3 232 75.0
Dinv22899 Davidia involucrata HOM05D003066 ORTHO05D004162 3.8e-96 355.1 204 83.8
SEGI_37657 Sequoiadendron giganteum HOM05D003066 ORTHO05D004162 1.1e-95 353.6 235 72.8
Pp3c16_4520 Physcomitrium patens HOM05D003066 ORTHO05D004162 6.1e-94 347.8 235 71.5
Pp3c16_4550 Physcomitrium patens HOM05D003066 ORTHO05D004162 6.1e-94 347.8 235 71.5
Pp3c27_5030 Physcomitrium patens HOM05D003066 ORTHO05D004162 5.2e-93 344.7 235 72.3
SMO201G0119 Selaginella moellendorffii HOM05D003066 ORTHO05D004162 8.8e-93 344.0 236 72.5
SEGI_16222 Sequoiadendron giganteum HOM05D003066 ORTHO05D004162 8.3e-91 337.4 236 70.3
Mapoly0068s0042 Marchantia polymorpha HOM05D003066 ORTHO05D004162 9.2e-90 334.0 232 70.7
Lsat_1_v5_gn_7_44401 Lactuca sativa HOM05D003066 ORTHO05D004162 1.2e-86 323.6 214 73.8
Lsat_1_v5_gn_5_26441 Lactuca sativa HOM05D003066 ORTHO05D004162 1.2e-84 317.0 214 73.4
Actinidia14715 Actinidia chinensis HOM05D003066 ORTHO05D004162 5.7e-84 314.7 181 84.0
Lsat_1_v5_gn_7_104540 Lactuca sativa HOM05D003066 ORTHO05D004162 7.5e-84 314.3 216 71.8
Lsat_1_v5_gn_9_73621 Lactuca sativa HOM05D003066 ORTHO05D004162 9.8e-84 313.9 209 73.7
CBR_g3314 Chara braunii HOM05D003066 ORTHO05D004162 1.1e-82 310.5 230 64.3
Atru.chr7.1061 Acer truncatum HOM05D003066 ORTHO05D004162 3.3e-79 298.9 178 79.2
Cre12.g534800 Chlamydomonas reinhardtii HOM05D003066 ORTHO05D004162 1.2e-78 297.0 236 63.6
Lsat_1_v5_gn_7_87221 Lactuca sativa HOM05D003066 ORTHO05D004162 1.6e-78 296.6 233 64.8
SGA_v2.0_scaffold169G38693 Striga asiatica HOM05D003066 ORTHO05D004162 5.2e-77 291.6 220 67.3
Hma1.2p1_1957F.1_g309050 Hydrangea macrophylla HOM05D003066 ORTHO05D004162 2.2e-75 286.2 220 68.2
MD08G1061400 Malus domestica HOM05D003066 ORTHO05D004162 4.9e-75 285.0 183 75.4
PRCOL_00000289 Prasinoderma coloniale HOM05D003066 ORTHO05D004162 1.9e-74 283.1 220 62.7
MCO15G616 Micromonas commoda HOM05D003066 ORTHO05D004162 5.4e-74 281.6 227 61.2
Haze_18191 Corylus avellana HOM05D003066 ORTHO05D004162 7.8e-73 277.7 164 83.5
BcaNung07090 Brassica carinata HOM05D003066 ORTHO05D004162 2.7e-65 252.7 168 72.0
Lsat_1_v5_gn_5_141420 Lactuca sativa HOM05D003066 ORTHO05D004162 3.5e-65 252.3 220 61.8
SGA_v2.0_scaffold163G38030 Striga asiatica HOM05D003066 ORTHO05D004162 4.0e-61 238.8 145 77.9
Cfa026270 Carpinus fangiana HOM05D003066 ORTHO05D004162 5.6e-55 218.4 208 51.4
Actinidia18188 Actinidia chinensis HOM05D003066 ORTHO05D004162 1.7e-51 206.8 108 90.7
Glyma.17G226902 Glycine max HOM05D003066 ORTHO05D004162 2.2e-51 206.5 132 75.0
Actinidia14716 Actinidia chinensis HOM05D003066 ORTHO05D004162 2.1e-49 199.9 189 58.7
Actinidia18189 Actinidia chinensis HOM05D003066 ORTHO05D004162 1.1e-47 194.1 104 86.5
Oeu009352.1 Olea europaea HOM05D003066 ORTHO05D004162 9.0e-45 184.5 177 54.2
Potri.018G053720 Populus trichocarpa HOM05D003066 ORTHO05D004162 1.6e-41 173.7 123 71.5
Lsat_1_v5_gn_5_188440 Lactuca sativa HOM05D003066 ORTHO05D004162 1.5e-39 167.2 96 83.3
QL10p046036 Quercus lobata HOM05D003066 ORTHO05D000074 4.5e-36 155.6 89 84.3
QL08p021213 Quercus lobata HOM05D003066 ORTHO05D000004 4.5e-28 129.0 73 84.9
Zm00001eb263030 Zea mays HOM05D003066 ORTHO05D004162 5.1e-24 115.5 74 77.0
Sc09g0009820 Simmondsia chinensis HOM05D003066 ORTHO05D004162 2.8e-22 109.8 63 85.7
Hma1.2p1_0450F.1_g155533 Hydrangea macrophylla HOM05D003066 ORTHO05D004162 4.1e-21 105.9 62 80.6
Hma1.2p1_0450F.1_g155550 Hydrangea macrophylla HOM05D003066 ORTHO05D004162 4.1e-21 105.9 62 80.6
QL04p088354 Quercus lobata HOM05D003066 ORTHO05D050631 1.2e-17 94.4 52 84.6
Atru.chr7.1062 Acer truncatum HOM05D003066 ORTHO05D004162 6.7e-16 88.6 45 93.3
Zm00001eb259860 Zea mays HOM05D003066 ORTHO05D050631 6.7e-16 88.6 56 76.8
Medtr1g016280 Medicago truncatula HOM05D003066 ORTHO05D004162 3.3e-15 86.3 47 85.1
Pp3c13_14900 Physcomitrium patens HOM05D003066 ORTHO05D004162 5.0e-11 72.4 97 41.2


User provided reference genes

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