Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj7A235T22 Lonicera japonica HOM05D006697 ORTHO05D008161 3.3e-124 448.4 221 100.0
Lj5C630T5 Lonicera japonica HOM05D006697 ORTHO05D008161 3.5e-118 428.3 220 95.9
Lj7C240T16 Lonicera japonica HOM05D006697 ORTHO05D008161 2.1e-102 375.9 222 88.7
Ciclev10024137m.g Citrus clementina HOM05D006697 ORTHO05D008161 3.0e-101 372.1 221 79.2
GSVIVG01036291001 Vitis vinifera HOM05D006697 ORTHO05D008161 1.1e-100 370.2 221 79.6
Dinv22109 Davidia involucrata HOM05D006697 ORTHO05D008161 2.5e-100 369.0 221 80.5
Migut.C01379 Erythranthe guttata HOM05D006697 ORTHO05D008161 4.3e-100 368.2 221 79.2
TWI12G1402 Tripterygium wilfordii HOM05D006697 ORTHO05D008161 1.6e-99 366.3 221 78.3
Hma1.2p1_0417F.1_g148910 Hydrangea macrophylla HOM05D006697 ORTHO05D008161 1.4e-98 363.2 220 77.7
Atru.chr13.2506 Acer truncatum HOM05D006697 ORTHO05D008161 1.8e-98 362.8 221 77.4
CiPaw.04G009300 Carya illinoinensis HOM05D006697 ORTHO05D008161 1.8e-98 362.8 220 78.2
Atru.chr13.2494 Acer truncatum HOM05D006697 ORTHO05D008161 5.3e-98 361.3 221 76.9
QL09p001838 Quercus lobata HOM05D006697 ORTHO05D008161 9.0e-98 360.5 220 78.6
Potri.001G377100 Populus trichocarpa HOM05D006697 ORTHO05D008161 2.6e-97 359.0 221 78.3
QL11p001773 Quercus lobata HOM05D006697 ORTHO05D008161 2.6e-97 359.0 220 78.2
Aqoxy7G01951 Aquilegia oxysepala HOM05D006697 ORTHO05D008161 7.6e-97 357.5 221 77.4
SGA_v2.0_scaffold24G10647 Striga asiatica HOM05D006697 ORTHO05D008161 1.0e-96 357.1 221 76.5
Sabra16G0248400 Salix brachista HOM05D006697 ORTHO05D008161 4.9e-96 354.8 238 73.1
COL.COLO4_05203 Corchorus olitorius HOM05D006697 ORTHO05D008161 6.5e-96 354.4 221 76.9
Sc23g0000070 Simmondsia chinensis HOM05D006697 ORTHO05D008161 8.4e-96 354.0 221 75.1
Duzib213G0772 Durio zibethinus HOM05D006697 ORTHO05D008161 1.4e-95 353.2 221 76.9
HanXRQChr08g0227531 Helianthus annuus HOM05D006697 ORTHO05D008161 3.2e-95 352.1 221 75.6
Actinidia03526 Actinidia chinensis HOM05D006697 ORTHO05D008161 4.2e-95 351.7 231 76.2
Cc10_g08640 Coffea canephora HOM05D006697 ORTHO05D008161 7.1e-95 350.9 221 76.9
MBI04_g46123_MAGBIO Magnolia biondii HOM05D006697 ORTHO05D008161 1.6e-94 349.7 221 76.0
CANSAT21G1464 Cannabis sativa HOM05D006697 ORTHO05D008161 2.7e-94 349.0 221 74.7
CANSAT21G1945 Cannabis sativa HOM05D006697 ORTHO05D008161 2.7e-94 349.0 221 74.7
AUR62013379 Chenopodium quinoa HOM05D006697 ORTHO05D008161 3.0e-93 345.5 221 74.2
EL10Ac1g01267 Beta vulgaris HOM05D006697 ORTHO05D008161 3.9e-93 345.1 221 73.3
Thecc.08G178500 Theobroma cacao HOM05D006697 ORTHO05D008161 8.7e-93 344.0 221 74.7
PGR044G1078 Punica granatum HOM05D006697 ORTHO05D008161 1.9e-92 342.8 221 74.2
Ah.05g170350 Amaranthus hybridus HOM05D006697 ORTHO05D008161 3.3e-92 342.0 221 72.4
AUR62038532 Chenopodium quinoa HOM05D006697 ORTHO05D008161 3.3e-92 342.0 221 73.8
Sopen06g023040 Solanum pennellii HOM05D006697 ORTHO05D008161 3.3e-92 342.0 221 72.9
Gorai.009G352800 Gossypium raimondii HOM05D006697 ORTHO05D008161 4.3e-92 341.7 219 74.0
Gohir.D05G329400 Gossypium hirsutum HOM05D006697 ORTHO05D008161 5.7e-92 341.3 219 74.0
PGSC0003DMG400033140 Solanum tuberosum HOM05D006697 ORTHO05D008161 7.4e-92 340.9 221 72.4
Solyc06g064560.4 Solanum lycopersicum HOM05D006697 ORTHO05D008161 1.4e-90 336.7 221 72.9
CsaV3_2G033200 Cucumis sativus L. HOM05D006697 ORTHO05D008161 3.1e-90 335.5 221 71.9
CAN.G14.56 Capsicum annuum HOM05D006697 ORTHO05D008161 4.1e-90 335.1 221 73.3
Cpa.g.sc21.84 Carica papaya HOM05D006697 ORTHO05D008161 1.5e-89 333.2 221 70.1
PGR044G1872 Punica granatum HOM05D006697 ORTHO05D008161 5.9e-89 331.3 221 71.5
ClCG11G008450 Citrullus lanatus HOM05D006697 ORTHO05D008161 1.7e-88 329.7 221 69.7
Ca_26167_v3 Cicer arietinum L. HOM05D006697 ORTHO05D008161 2.9e-88 328.9 220 71.4
arahy.Tifrunner.gnm1.ann1.D2QDKL Arachis hypogaea HOM05D006697 ORTHO05D008161 3.8e-88 328.6 221 70.6
MD05G1004600 Malus domestica HOM05D006697 ORTHO05D008161 5.0e-88 328.2 235 69.4
Sed0014406 Sechium edule HOM05D006697 ORTHO05D008161 6.5e-88 327.8 221 69.2
TPR.G29429 Trifolium pratense HOM05D006697 ORTHO05D008161 6.5e-88 327.8 221 70.1
vmacro17835 Vaccinium macrocarpon HOM05D006697 ORTHO05D008161 6.5e-88 327.8 236 69.5
arahy.Tifrunner.gnm1.ann1.6HI5DG Arachis hypogaea HOM05D006697 ORTHO05D008161 8.4e-88 327.4 221 71.0
arahy.Tifrunner.gnm1.ann1.L3LJ1W Arachis hypogaea HOM05D006697 ORTHO05D008161 8.4e-88 327.4 221 71.0
Glyma.11G110500 Glycine max HOM05D006697 ORTHO05D008161 8.4e-88 327.4 221 70.6
THA.LOC104814608 Tarenaya hassleriana HOM05D006697 ORTHO05D008161 7.2e-87 324.3 221 69.7
PSO170G3180 Papaver somniferum HOM05D006697 ORTHO05D008161 1.6e-86 323.2 221 70.1
Peaxi162Scf00818g00536 Petunia axillaris HOM05D006697 ORTHO05D008161 2.1e-86 322.8 219 70.8
Haze_13956 Corylus avellana HOM05D006697 ORTHO05D008161 2.7e-86 322.4 206 76.7
SalBow7G2072 Salvia bowleyana HOM05D006697 ORTHO05D008161 4.6e-86 321.6 274 61.3
RcHm_v2.0_Chr6g0251241 Rosa chinensis HOM05D006697 ORTHO05D008161 7.9e-86 320.9 221 68.3
Phvul.011G017400 Phaseolus vulgaris HOM05D006697 ORTHO05D008161 1.3e-85 320.1 221 68.3
ECA247G0072 Erigeron canadensis HOM05D006697 ORTHO05D008161 2.3e-85 319.3 219 70.3
Medtr2g010410 Medicago truncatula HOM05D006697 ORTHO05D008161 2.3e-85 319.3 221 68.8
FvH4_2g00851 Fragaria vesca HOM05D006697 ORTHO05D008161 3.9e-85 318.5 221 67.9
Psat1g020920 Pisum sativum HOM05D006697 ORTHO05D008161 3.9e-85 318.5 221 67.4
VMungo1127G1290 Vigna mungo HOM05D006697 ORTHO05D008161 5.1e-85 318.2 221 68.8
Lj3g0000289 Lotus japonicus HOM05D006697 ORTHO05D008161 9.7e-84 313.9 221 69.2
Aa31LG2G660 Aethionema arabicum HOM05D006697 ORTHO05D008161 2.2e-83 312.8 228 66.2
FAN27G1710 Fragaria x ananassa HOM05D006697 ORTHO05D008161 2.2e-83 312.8 221 67.0
vmacro14431 Vaccinium macrocarpon HOM05D006697 ORTHO05D008161 2.2e-83 312.8 257 63.8
Nn8g39331 Nelumbo nucifera HOM05D006697 ORTHO05D008161 1.8e-82 309.7 221 69.2
AL1G24400 Arabidopsis lyrata HOM05D006697 ORTHO05D008161 2.4e-82 309.3 221 67.0
Os05g0588200 Oryza sativa ssp. japonica HOM05D006697 ORTHO05D008161 5.3e-82 308.1 220 70.0
Manes.02G201500 Manihot esculenta HOM05D006697 ORTHO05D008161 6.9e-82 307.8 221 70.6
Thhalv10008579m.g Eutrema salsugineum HOM05D006697 ORTHO05D008161 9.0e-82 307.4 221 64.3
Sp1g11350 Schrenkiella parvula HOM05D006697 ORTHO05D008161 9.0e-82 307.4 221 64.7
Hund16916 Selenicereus undatus HOM05D006697 ORTHO05D008161 1.5e-81 306.6 221 68.3
HPP92_021490 Vanilla planifolia HOM05D006697 ORTHO05D008161 1.5e-81 306.6 221 68.3
AT1G12790 Arabidopsis thaliana HOM05D006697 ORTHO05D008161 2.0e-81 306.2 221 65.6
HPP92_021529 Vanilla planifolia HOM05D006697 ORTHO05D008161 2.0e-81 306.2 221 68.3
Carub.0001s1251 Capsella rubella HOM05D006697 ORTHO05D008161 4.5e-81 305.1 221 65.2
CARHR013100 Cardamine hirsuta HOM05D006697 ORTHO05D008161 7.7e-81 304.3 221 65.2
SGA_v2.0_scaffold147G36299 Striga asiatica HOM05D006697 ORTHO05D008161 7.7e-81 304.3 221 69.7
TAR625G0361 Trochodendron aralioides HOM05D006697 ORTHO05D008161 2.6e-76 289.3 206 68.9
Nitab4.5_0002654g0040 Nicotiana tabacum HOM05D006697 ORTHO05D008161 4.3e-76 288.5 239 61.5
Zm00001eb345090 Zea mays HOM05D006697 ORTHO05D008161 5.7e-76 288.1 221 62.9
FAN20G2680 Fragaria x ananassa HOM05D006697 ORTHO05D008161 2.8e-75 285.8 203 66.5
Prupe.8G007100 Prunus persica HOM05D006697 ORTHO05D008161 5.3e-74 281.6 221 64.7
DCAR_016528 Daucus carota HOM05D006697 ORTHO05D008161 4.5e-73 278.5 172 75.6
A06p08910 Brassica napus HOM05D000776 ORTHO05D008161 1.0e-72 277.3 216 60.6
BraA06t24084Z Brassica rapa HOM05D000776 ORTHO05D008161 1.7e-72 276.6 216 61.1
CAN.G27.3 Capsicum annuum HOM05D006697 ORTHO05D008161 2.3e-69 266.2 197 66.0
BcaC05g25157 Brassica carinata HOM05D000776 ORTHO05D008161 1.5e-68 263.5 207 61.8
C05p10520 Brassica napus HOM05D000776 ORTHO05D008161 1.5e-68 263.5 207 61.8
MD05G1003900 Malus domestica HOM05D006697 ORTHO05D008161 4.4e-68 261.9 172 71.5
Rhsim08G0116200 Rhododendron simsii HOM05D006697 ORTHO05D008161 1.7e-67 260.0 253 56.5
CSS0011722 Camellia sinensis var. sinensis HOM05D006697 ORTHO05D008161 2.8e-67 259.2 206 66.5
Glyma.12G014500 Glycine max HOM05D006697 ORTHO05D008161 2.8e-67 259.2 176 69.3
BolC5t29798H Brassica oleracea HOM05D000776 ORTHO05D008161 6.3e-67 258.1 211 60.7
CSS0025148 Camellia sinensis var. sinensis HOM05D006697 ORTHO05D008161 8.2e-67 257.7 207 65.2
BcaC05g25114 Brassica carinata HOM05D006697 ORTHO05D008161 4.1e-66 255.4 198 63.1
Nitab4.5_0010319g0040 Nicotiana tabacum HOM05D006697 ORTHO05D008161 9.1e-66 254.2 230 58.3
ATR0083G058 Amborella trichopoda HOM05D006697 ORTHO05D008161 3.5e-65 252.3 183 67.2
SHI16724 Sapria himalayana HOM05D006697 ORTHO05D008161 3.2e-63 245.7 275 52.7
Eucgr.F04072 Eucalyptus grandis HOM05D006697 ORTHO05D008161 1.8e-61 240.0 159 75.5
Lsat_1_v5_gn_1_24901 Lactuca sativa HOM05D006697 ORTHO05D008161 3.1e-58 229.2 147 72.8
Gohir.A05G328400 Gossypium hirsutum HOM05D006697 ORTHO05D008161 1.2e-57 227.3 143 72.0
arahy.Tifrunner.gnm1.ann1.9U8FPX Arachis hypogaea HOM05D006697 ORTHO05D008161 4.5e-57 225.3 218 56.9
arahy.Tifrunner.gnm1.ann1.3DZ399 Arachis hypogaea HOM05D006697 ORTHO05D008161 8.8e-53 211.1 221 53.4
Lalb_Chr01g0000751 Lupinus albus HOM05D006697 ORTHO05D008161 4.8e-51 205.3 129 70.5
MSTRG.1598 Avicennia marina HOM05D006697 ORTHO05D008161 6.3e-51 204.9 119 83.2
MELO3C029791.2 Cucumis melo HOM05D006697 ORTHO05D008161 8.3e-51 204.5 161 65.8
unitig_32.g11220 Utricularia gibba HOM05D000486 ORTHO05D000375 2.1e-46 189.9 170 58.8
unitig_32.g11211 Utricularia gibba HOM05D006697 ORTHO05D008161 1.0e-45 187.6 124 74.2
arahy.Tifrunner.gnm1.ann1.K2UT7U Arachis hypogaea HOM05D006697 ORTHO05D008161 4.1e-42 175.6 123 69.9
arahy.Tifrunner.gnm1.ann1.GZG3VH Arachis hypogaea HOM05D006697 ORTHO05D008161 6.8e-37 158.3 143 57.3
AL1G24230 Arabidopsis lyrata HOM05D006697 ORTHO05D008161 8.9e-37 157.9 132 57.6
SMO119G0513 Selaginella moellendorffii HOM05D006697 ORTHO05D008161 2.1e-30 136.7 208 33.2
Mapoly0068s0032 Marchantia polymorpha HOM05D006697 ORTHO05D008161 9.8e-28 127.9 191 36.1
RcHm_v2.0_Chr6g0275321 Rosa chinensis HOM05D006697 ORTHO05D008161 2.0e-25 120.2 122 50.0
Lalb_Chr01g0000761 Lupinus albus HOM05D006697 ORTHO05D008161 2.3e-21 106.7 77 66.2
arahy.Tifrunner.gnm1.ann1.D8HQTE Arachis hypogaea HOM05D006697 ORTHO05D008161 8.3e-19 98.2 69 62.3
Lj7A241T18 Lonicera japonica HOM05D006697 ORTHO05D008161 1.8e-13 80.5 43 88.4
Medtr2g451120 Medicago truncatula HOM05D006697 ORTHO05D008161 4.9e-11 72.4 84 46.4
FAN20G1527 Fragaria x ananassa HOM05D006697 ORTHO05D205377 6.2e-06 55.5 76 40.8


User provided reference genes

Program Settings