Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj7A20T61 Lonicera japonica HOM05D005480 ORTHO05D006735 5.0e-213 744.6 424 100.0
Lj7A18T44 Lonicera japonica HOM05D005480 ORTHO05D006735 8.9e-202 707.2 420 96.9
CSS0014684 Camellia sinensis var. sinensis HOM05D005480 ORTHO05D006735 4.3e-156 555.4 412 77.7
Dinv39906 Davidia involucrata HOM05D005480 ORTHO05D006735 2.8e-155 552.7 413 75.8
CiPaw.01G026500 Carya illinoinensis HOM05D005480 ORTHO05D006735 2.9e-152 542.7 425 73.9
CSS0005424 Camellia sinensis var. sinensis HOM05D005480 ORTHO05D006735 4.2e-151 538.9 412 76.5
Eucgr.H01972 Eucalyptus grandis HOM05D005480 ORTHO05D006735 5.4e-151 538.5 433 74.4
Sopen02g034920 Solanum pennellii HOM05D005480 ORTHO05D006735 2.1e-150 536.6 413 75.5
Thecc.01G048100 Theobroma cacao HOM05D005480 ORTHO05D006735 4.6e-150 535.4 421 74.6
Solyc02g090230.4 Solanum lycopersicum HOM05D005480 ORTHO05D006735 6.0e-150 535.0 413 75.3
DCAR_021432 Daucus carota HOM05D005480 ORTHO05D006735 7.9e-150 534.6 415 74.0
QL06p043724 Quercus lobata HOM05D005480 ORTHO05D006735 3.9e-149 532.3 426 72.1
PGSC0003DMG400010074 Solanum tuberosum HOM05D005480 ORTHO05D006735 3.9e-149 532.3 413 74.8
Dinv26753 Davidia involucrata HOM05D005480 ORTHO05D006735 5.6e-148 528.5 332 84.6
Gohir.A12G068600 Gossypium hirsutum HOM05D005480 ORTHO05D006735 6.2e-147 525.0 422 73.7
Gohir.D12G090600 Gossypium hirsutum HOM05D005480 ORTHO05D006735 8.1e-147 524.6 422 72.3
Cc07_g05560 Coffea canephora HOM05D005480 ORTHO05D006735 6.9e-146 521.5 412 72.3
MELO3C007529.2 Cucumis melo HOM05D005480 ORTHO05D006735 3.4e-145 519.2 423 70.4
Gorai.008G072400 Gossypium raimondii HOM05D005480 ORTHO05D006735 3.8e-144 515.8 429 72.0
Duzib187G0998 Durio zibethinus HOM05D005480 ORTHO05D006735 8.4e-144 514.6 420 72.9
Glyma.01G181500 Glycine max HOM05D005480 ORTHO05D006735 1.9e-143 513.5 422 70.9
CsaV3_6G042900 Cucumis sativus L. HOM05D005480 ORTHO05D006735 5.5e-143 511.9 423 69.3
Actinidia12077 Actinidia chinensis HOM05D005480 ORTHO05D006735 7.1e-143 511.5 414 76.3
Duzib147G0741 Durio zibethinus HOM05D005480 ORTHO05D006735 9.3e-143 511.1 421 73.2
TPR.G11349 Trifolium pratense HOM05D005480 ORTHO05D006735 2.1e-142 510.0 419 70.9
Medtr5g018390 Medicago truncatula HOM05D005480 ORTHO05D006735 8.7e-141 504.6 427 71.2
Hma1.2p1_0546F.1_g176180 Hydrangea macrophylla HOM05D005480 ORTHO05D006735 1.5e-140 503.8 421 70.3
PGR102G0042 Punica granatum HOM05D005480 ORTHO05D006735 3.3e-140 502.7 425 72.0
TAR625G1062 Trochodendron aralioides HOM05D005480 ORTHO05D006735 1.6e-139 500.4 432 68.8
Manes.13G130100 Manihot esculenta HOM05D005480 ORTHO05D006735 2.8e-139 499.6 430 70.2
Potri.007G036600 Populus trichocarpa HOM05D005480 ORTHO05D006735 8.2e-139 498.0 420 71.2
Sed0026694 Sechium edule HOM05D005480 ORTHO05D006735 8.2e-139 498.0 421 69.6
Prupe.7G142300 Prunus persica HOM05D005480 ORTHO05D006735 1.8e-138 496.9 419 70.6
VMungo1215G2543 Vigna mungo HOM05D005480 ORTHO05D006735 3.1e-138 496.1 416 71.2
Rhsim02G0168000 Rhododendron simsii HOM05D005480 ORTHO05D006735 2.6e-137 493.0 384 73.2
MSTRG.23794 Avicennia marina HOM05D005480 ORTHO05D006735 3.4e-137 492.7 413 70.9
Cfa004218 Carpinus fangiana HOM05D005480 ORTHO05D006735 1.3e-136 490.7 399 72.9
Phvul.002G022500 Phaseolus vulgaris HOM05D005480 ORTHO05D006735 1.3e-136 490.7 421 70.1
TAR381G0420 Trochodendron aralioides HOM05D005480 ORTHO05D006735 1.3e-136 490.7 375 73.3
Sc03g0001260 Simmondsia chinensis HOM05D005480 ORTHO05D006735 1.7e-136 490.3 429 65.0
Lj2g0021055 Lotus japonicus HOM05D005480 ORTHO05D006735 3.8e-136 489.2 430 68.8
Ciclev10025487m.g Citrus clementina HOM05D005480 ORTHO05D006735 8.4e-136 488.0 358 74.9
CANSAT01G1679 Cannabis sativa HOM05D005480 ORTHO05D006735 1.9e-135 486.9 425 72.0
RcHm_v2.0_Chr2g0103771 Rosa chinensis HOM05D005480 ORTHO05D006735 3.2e-135 486.1 419 70.6
Glyma.11G059700 Glycine max HOM05D005480 ORTHO05D006735 9.3e-135 484.6 332 78.3
ClCG01G016580 Citrullus lanatus HOM05D005480 ORTHO05D006735 1.2e-134 484.2 468 62.4
Peaxi162Scf00993g00022 Petunia axillaris HOM05D005480 ORTHO05D006735 3.5e-134 482.6 381 76.1
Ah.02g123950 Amaranthus hybridus HOM05D005480 ORTHO05D006735 7.9e-134 481.5 426 67.4
MD02G1161300 Malus domestica HOM05D005480 ORTHO05D006735 5.1e-133 478.8 424 66.5
Migut.H00485 Erythranthe guttata HOM05D005480 ORTHO05D006735 8.7e-133 478.0 448 64.3
FAN23G2977 Fragaria x ananassa HOM05D005480 ORTHO05D006735 1.1e-130 471.1 438 65.3
FvH4_1g14810 Fragaria vesca HOM05D005480 ORTHO05D006735 6.9e-130 468.4 422 69.2
FAN19G1500 Fragaria x ananassa HOM05D005480 ORTHO05D006735 6.9e-130 468.4 422 69.2
Psat2g164160 Pisum sativum HOM05D005480 ORTHO05D006735 9.0e-130 468.0 405 71.1
Aqoxy5G01417 Aquilegia oxysepala HOM05D005480 ORTHO05D006735 2.6e-129 466.5 424 66.3
Lalb_Chr09g0322931 Lupinus albus HOM05D005480 ORTHO05D006735 4.5e-129 465.7 424 68.2
THA.LOC104819823 Tarenaya hassleriana HOM05D005480 ORTHO05D006735 4.5e-129 465.7 338 73.7
MD15G1275400 Malus domestica HOM05D005480 ORTHO05D006735 5.9e-129 465.3 412 68.0
FAN28G0426 Fragaria x ananassa HOM05D005480 ORTHO05D006735 2.2e-128 463.4 307 78.5
arahy.Tifrunner.gnm1.ann1.E9URZA Arachis hypogaea HOM05D005480 ORTHO05D006735 5.0e-128 462.2 417 70.0
FAN26G2127 Fragaria x ananassa HOM05D005480 ORTHO05D006735 5.0e-128 462.2 421 68.2
Nn6g32121 Nelumbo nucifera HOM05D005480 ORTHO05D006735 9.4e-127 458.0 418 69.6
ECA232G3160 Erigeron canadensis HOM05D005480 ORTHO05D006735 1.2e-126 457.6 442 62.9
HanXRQChr04g0123741 Helianthus annuus HOM05D005480 ORTHO05D006735 3.6e-126 456.1 401 69.8
Hund13586 Selenicereus undatus HOM05D005480 ORTHO05D006735 6.1e-126 455.3 423 65.2
Oeu003952.2 Olea europaea HOM05D005480 ORTHO05D006735 3.0e-125 453.0 597 50.8
Nitab4.5_0001014g0070 Nicotiana tabacum HOM05D005480 ORTHO05D006735 5.1e-125 452.2 380 71.3
COL.COLO4_11327 Corchorus olitorius HOM05D005480 ORTHO05D006735 1.1e-124 451.1 347 73.8
Nitab4.5_0000108g0300 Nicotiana tabacum HOM05D005480 ORTHO05D006735 1.1e-124 451.1 382 71.2
SGA_v2.0_scaffold15G07231 Striga asiatica HOM05D005480 ORTHO05D006735 1.1e-124 451.1 330 73.3
MBI16_g19897_MAGBIO Magnolia biondii HOM05D005480 ORTHO05D006735 3.3e-124 449.5 401 66.1
PSO170G5089 Papaver somniferum HOM05D005480 ORTHO05D006735 3.3e-124 449.5 331 71.3
PSO210G7251 Papaver somniferum HOM05D005480 ORTHO05D006735 9.7e-124 448.0 331 71.3
Lsat_1_v5_gn_4_179460 Lactuca sativa HOM05D005480 ORTHO05D006735 1.2e-121 441.0 432 62.7
vmacro05295 Vaccinium macrocarpon HOM05D005480 ORTHO05D006735 5.9e-121 438.7 371 72.0
CAN.G836.34 Capsicum annuum HOM05D005480 ORTHO05D006735 1.3e-120 437.6 380 68.4
unitig_899.g14972 Utricularia gibba HOM05D005480 ORTHO05D006735 5.5e-119 432.2 406 63.1
Sp7g34650 Schrenkiella parvula HOM05D005480 ORTHO05D006735 1.4e-117 427.6 435 62.3
AL7G13910 Arabidopsis lyrata HOM05D005480 ORTHO05D006735 2.0e-116 423.7 327 70.3
ATR0733G143 Amborella trichopoda HOM05D005480 ORTHO05D006735 9.7e-116 421.4 437 57.4
Sabra07G0032600 Salix brachista HOM05D005480 ORTHO05D006735 9.7e-116 421.4 385 69.1
AT4G37130 Arabidopsis thaliana HOM05D005480 ORTHO05D006735 4.8e-115 419.1 327 70.0
Thhalv10025060m.g Eutrema salsugineum HOM05D005480 ORTHO05D006735 1.1e-114 417.9 421 63.7
Carub.0007s0332 Capsella rubella HOM05D005480 ORTHO05D006735 1.2e-113 414.5 433 62.8
CDE01G0732 Ceratophyllum demersum HOM05D005480 ORTHO05D006735 5.9e-113 412.1 422 60.0
CARHR245380 Cardamine hirsuta HOM05D005480 ORTHO05D006735 3.8e-112 409.5 329 68.4
Aa31LG6G13860 Aethionema arabicum HOM05D005480 ORTHO05D006735 7.2e-111 405.2 333 67.0
SalBow1G5517 Salvia bowleyana HOM05D006685 ORTHO05D008244 1.0e-109 401.4 279 77.1
AUR62003828 Chenopodium quinoa HOM05D005480 ORTHO05D006735 1.8e-109 400.6 406 62.6
CDE02G2721 Ceratophyllum demersum HOM05D005480 ORTHO05D006735 2.8e-107 393.3 291 70.8
A01p01950 Brassica napus HOM05D005480 ORTHO05D006735 3.7e-107 392.9 423 59.6
BraA01t00184Z Brassica rapa HOM05D005480 ORTHO05D006735 3.7e-107 392.9 423 59.3
SHI08751 Sapria himalayana HOM05D005480 ORTHO05D006735 3.7e-107 392.9 402 61.7
Haze_15193 Corylus avellana HOM05D005480 ORTHO05D006735 6.3e-107 392.1 356 70.2
BcaNung03510 Brassica carinata HOM05D005480 ORTHO05D006735 3.1e-106 389.8 378 62.7
BolC1t00204H Brassica oleracea HOM05D005480 ORTHO05D006735 1.7e-104 384.0 377 62.6
C01p02120 Brassica napus HOM05D005480 ORTHO05D006735 5.0e-104 382.5 377 63.1
BolC3t20222H Brassica oleracea HOM05D005480 ORTHO05D006735 1.5e-103 380.9 323 66.3
BcaB03g12366 Brassica carinata HOM05D005480 ORTHO05D006735 1.6e-102 377.5 429 55.9
Ca_24802_v3 Cicer arietinum L. HOM05D005480 ORTHO05D006735 1.4e-101 374.4 351 66.4
BcaC01g00434 Brassica carinata HOM05D005480 ORTHO05D006735 5.7e-100 369.0 329 63.2
C03p79710 Brassica napus HOM05D005480 ORTHO05D006735 5.7e-100 369.0 329 63.2
A08p22500 Brassica napus HOM05D005480 ORTHO05D006735 2.8e-99 366.7 421 54.4
BraA08t34205Z Brassica rapa HOM05D005480 ORTHO05D006735 3.7e-99 366.3 384 57.6
GSVIVG01005079001 Vitis vinifera HOM05D005480 ORTHO05D006735 3.5e-97 359.8 239 78.2
AUR62001975 Chenopodium quinoa HOM05D005480 ORTHO05D006735 1.8e-93 347.4 351 61.5
Os09g0453500 Oryza sativa ssp. japonica HOM05D005480 ORTHO05D006735 1.8e-93 347.4 407 52.1
arahy.Tifrunner.gnm1.ann1.HXIH5S Arachis hypogaea HOM05D005480 ORTHO05D006735 2.3e-93 347.1 360 62.5
Lalb_Chr05g0213141 Lupinus albus HOM05D005480 ORTHO05D006735 1.0e-88 331.6 252 69.8
Zm00001eb314700 Zea mays HOM05D005480 ORTHO05D006735 6.1e-86 322.4 421 51.3
BcaB03g12364 Brassica carinata HOM05D005480 ORTHO05D006735 1.3e-83 314.7 395 51.1
Zm00001eb100530 Zea mays HOM05D005480 ORTHO05D006735 2.9e-83 313.5 418 50.0
AagrBONN_evm.TU.Sc2ySwM_117.4106 Anthoceros agrestis HOM05D005480 ORTHO05D006735 5.4e-82 309.3 342 53.2
SGA_v2.0_scaffold135G34951 Striga asiatica HOM05D005480 ORTHO05D006735 1.5e-71 274.6 390 52.8
Mapoly0027s0041 Marchantia polymorpha HOM05D005480 ORTHO05D006735 1.8e-69 267.7 411 44.8
Ah.03g144040 Amaranthus hybridus HOM05D005480 ORTHO05D006735 1.1e-66 258.5 228 59.6
Pp3c24_6760 Physcomitrium patens HOM05D005480 ORTHO05D006735 1.0e-64 251.9 405 44.4
HPP92_016040 Vanilla planifolia HOM05D005480 ORTHO05D006735 3.9e-64 250.0 206 61.2
SEGI_40098 Sequoiadendron giganteum HOM05D005480 ORTHO05D006735 2.3e-61 240.7 333 52.3
CBR_g66690 Chara braunii HOM05D005480 ORTHO05D006735 3.4e-52 210.3 457 38.3
Os03g0765400 Oryza sativa ssp. japonica HOM05D005480 ORTHO05D006735 2.2e-51 207.6 364 42.0
Psat5g148720 Pisum sativum HOM05D005480 ORTHO05D006735 1.1e-42 178.7 201 58.2
Mapoly0016s0112 Marchantia polymorpha HOM05D005480 ORTHO05D006735 4.2e-42 176.8 291 39.2
Cpa.g.c44085 Carica papaya HOM05D005480 ORTHO05D006735 8.7e-40 169.1 183 62.3
Sabra07G0033400 Salix brachista HOM05D005480 ORTHO05D006735 2.4e-29 134.4 196 61.7
Sabra07G0033100 Salix brachista HOM05D005480 ORTHO05D006735 3.4e-28 130.6 195 60.5
Sabra07G0032900 Salix brachista HOM05D005480 ORTHO05D006735 4.5e-28 130.2 195 60.5
HPP92_016039 Vanilla planifolia HOM05D005480 ORTHO05D006735 1.1e-26 125.6 71 84.5
Ah.03g144030 Amaranthus hybridus HOM05D005480 ORTHO05D006735 2.1e-17 94.7 84 61.9
Cre16.g685217 Chlamydomonas reinhardtii HOM05D005480 ORTHO05D006735 1.1e-13 82.4 261 26.1
C04p28170 Brassica napus HOM05D005480 ORTHO05D006735 6.9e-13 79.7 96 51.0
BolC4t24360H Brassica oleracea HOM05D005480 ORTHO05D006735 6.9e-13 79.7 96 51.0
BcaC02g10502 Brassica carinata HOM05D005480 ORTHO05D006735 1.7e-11 75.1 85 51.8
PRCOL_00002206 Prasinoderma coloniale HOM05D005480 ORTHO05D006735 6.5e-11 73.2 361 26.6
C04p33290 Brassica napus HOM05D005480 ORTHO05D006735 2.7e-09 67.8 110 43.6
BolC4t24894H Brassica oleracea HOM05D005480 ORTHO05D006735 1.4e-08 65.5 97 47.4
CBR_g66696 Chara braunii HOM05D005480 ORTHO05D006735 3.9e-08 63.9 172 34.9
GSVIVG01006101001 Vitis vinifera HOM05D005480 ORTHO05D006735 2.2e-06 58.2 77 59.7


User provided reference genes

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