Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6g0014483 Lotus japonicus HOM05D004582 ORTHO05D005507 4.5e-64 247.7 116 100.0
VMungo0251G1823 Vigna mungo HOM05D000329 ORTHO05D002813 1.1e-59 233.0 115 92.2
Glyma.17G000400 Glycine max HOM05D004582 ORTHO05D005507 7.4e-59 230.3 115 90.4
Phvul.003G004200 Phaseolus vulgaris HOM05D004582 ORTHO05D005507 7.4e-59 230.3 115 91.3
Phvul.001G068300 Phaseolus vulgaris HOM05D004582 ORTHO05D005507 1.6e-58 229.2 115 90.4
Lalb_Chr10g0094681 Lupinus albus HOM05D004582 ORTHO05D005507 3.7e-58 228.0 115 88.7
Glyma.07G274100 Glycine max HOM05D004582 ORTHO05D005507 4.8e-58 227.6 115 89.6
Eucgr.G02614 Eucalyptus grandis HOM05D004582 ORTHO05D005507 6.9e-57 223.8 111 90.1
CANSAT78G1495 Cannabis sativa HOM05D004582 ORTHO05D005507 1.2e-56 223.0 115 86.1
Sed0002882 Sechium edule HOM05D004582 ORTHO05D005507 1.2e-56 223.0 115 85.2
PGR142G2001 Punica granatum HOM05D004582 ORTHO05D005507 2.0e-56 222.2 114 87.7
Aa31LG3G17960 Aethionema arabicum HOM05D004582 ORTHO05D005507 2.6e-56 221.9 115 87.8
MELO3C023752.2 Cucumis melo HOM05D004582 ORTHO05D005507 2.6e-56 221.9 115 85.2
CsaV3_3G020290 Cucumis sativus L. HOM05D004582 ORTHO05D005507 2.6e-56 221.9 115 85.2
Sed0027851 Sechium edule HOM05D004582 ORTHO05D005507 2.6e-56 221.9 115 86.1
Manes.01G004880 Manihot esculenta HOM05D004582 ORTHO05D005507 4.5e-56 221.1 115 85.2
Sp2g26760 Schrenkiella parvula HOM05D004582 ORTHO05D005507 4.5e-56 221.1 115 87.8
Ca_16312_v3 Cicer arietinum L. HOM05D004582 ORTHO05D005507 5.8e-56 220.7 114 86.8
Ciclev10017231m.g Citrus clementina HOM05D004582 ORTHO05D005507 5.8e-56 220.7 116 84.5
Thhalv10005155m.g Eutrema salsugineum HOM05D004582 ORTHO05D005507 5.8e-56 220.7 115 87.8
Carub.0006s0753 Capsella rubella HOM05D004582 ORTHO05D005507 7.6e-56 220.3 115 87.0
THA.LOC104819361 Tarenaya hassleriana HOM05D004582 ORTHO05D005507 7.6e-56 220.3 115 86.1
Aa31LG10G11080 Aethionema arabicum HOM05D004582 ORTHO05D005507 1.0e-55 219.9 115 87.0
Aa31LG1G18160 Aethionema arabicum HOM05D004582 ORTHO05D005507 1.0e-55 219.9 115 87.0
Carub.0008s2444 Capsella rubella HOM05D004582 ORTHO05D005507 1.3e-55 219.5 115 87.8
BcaB07g29700 Brassica carinata HOM05D004582 ORTHO05D005507 2.2e-55 218.8 115 87.8
Cfa005243 Carpinus fangiana HOM05D004582 ORTHO05D005507 2.2e-55 218.8 115 84.3
BcaC03g18219 Brassica carinata HOM05D004582 ORTHO05D005507 2.9e-55 218.4 115 87.0
A02p42940 Brassica napus HOM05D004582 ORTHO05D005507 2.9e-55 218.4 115 87.0
C02p62880 Brassica napus HOM05D004582 ORTHO05D005507 2.9e-55 218.4 115 87.0
BraA02t09217Z Brassica rapa HOM05D004582 ORTHO05D005507 2.9e-55 218.4 115 87.0
AT5G08565 Arabidopsis thaliana HOM05D004582 ORTHO05D005507 4.9e-55 217.6 115 86.1
GSVIVG01034346001 Vitis vinifera HOM05D004582 ORTHO05D005507 4.9e-55 217.6 111 87.4
AL6G19290 Arabidopsis lyrata HOM05D004582 ORTHO05D005507 6.5e-55 217.2 115 85.2
AL8G40820 Arabidopsis lyrata HOM05D004582 ORTHO05D005507 6.5e-55 217.2 115 87.0
AT5G63670 Arabidopsis thaliana HOM05D004582 ORTHO05D005507 6.5e-55 217.2 115 87.0
CARHR278210 Cardamine hirsuta HOM05D004582 ORTHO05D005507 6.5e-55 217.2 115 86.1
Lsat_1_v5_gn_1_108541 Lactuca sativa HOM05D004582 ORTHO05D005507 1.1e-54 216.5 110 88.2
Gohir.A04G109900 Gossypium hirsutum HOM05D004582 ORTHO05D005507 2.5e-54 215.3 115 83.5
Gohir.D04G150100 Gossypium hirsutum HOM05D004582 ORTHO05D005507 2.5e-54 215.3 115 83.5
Gorai.012G136700 Gossypium raimondii HOM05D004582 ORTHO05D005507 2.5e-54 215.3 115 83.5
THA.LOC104800345 Tarenaya hassleriana HOM05D004582 ORTHO05D005507 3.2e-54 214.9 115 83.5
TWI15G0512 Tripterygium wilfordii HOM05D004582 ORTHO05D005507 3.2e-54 214.9 111 85.6
TAR629G2421 Trochodendron aralioides HOM05D004582 ORTHO05D005507 3.2e-54 214.9 110 86.4
Duzib248G0155 Durio zibethinus HOM05D004582 ORTHO05D005507 5.5e-54 214.2 115 82.6
vmacro00989 Vaccinium macrocarpon HOM05D004582 ORTHO05D005507 5.5e-54 214.2 110 86.4
Actinidia04370 Actinidia chinensis HOM05D004582 ORTHO05D005507 7.1e-54 213.8 110 86.4
CSS0028000 Camellia sinensis var. sinensis HOM05D004582 ORTHO05D005507 7.1e-54 213.8 110 85.5
Hma1.2p1_2673F.1_g326700 Hydrangea macrophylla HOM05D004582 ORTHO05D005507 7.1e-54 213.8 110 85.5
Potri.008G002400 Populus trichocarpa HOM05D004582 ORTHO05D005507 7.1e-54 213.8 115 82.6
Thecc.02G151700 Theobroma cacao HOM05D004582 ORTHO05D005507 7.1e-54 213.8 115 82.6
Potri.010G255000 Populus trichocarpa HOM05D004582 ORTHO05D005507 9.3e-54 213.4 115 82.6
Sp6g34300 Schrenkiella parvula HOM05D004582 ORTHO05D005507 9.3e-54 213.4 115 84.3
Sc06g0007770 Simmondsia chinensis HOM05D004582 ORTHO05D005507 1.2e-53 213.0 110 87.3
CiPaw.06G093300 Carya illinoinensis HOM05D004582 ORTHO05D005507 1.6e-53 212.6 115 82.6
Psat5g071960 Pisum sativum HOM05D004582 ORTHO05D005507 2.1e-53 212.2 116 82.8
Solyc04g008750.3 Solanum lycopersicum HOM05D004582 ORTHO05D005507 2.1e-53 212.2 115 79.1
Sopen04g003930 Solanum pennellii HOM05D004582 ORTHO05D005507 2.1e-53 212.2 115 79.1
PGSC0003DMG400025297 Solanum tuberosum HOM05D004582 ORTHO05D005507 2.7e-53 211.8 115 79.1
MSTRG.25043 Avicennia marina HOM05D004582 ORTHO05D005507 6.1e-53 210.7 110 85.5
Hund08683 Selenicereus undatus HOM05D004582 ORTHO05D005507 6.1e-53 210.7 110 84.5
Atru.chr11.27 Acer truncatum HOM05D004582 ORTHO05D005507 7.9e-53 210.3 116 80.2
Cc11_g00370 Coffea canephora HOM05D004582 ORTHO05D005507 7.9e-53 210.3 110 84.5
Prupe.3G015100 Prunus persica HOM05D004582 ORTHO05D005507 7.9e-53 210.3 112 82.1
Nn8g39808 Nelumbo nucifera HOM05D004582 ORTHO05D005507 1.3e-52 209.5 116 83.6
SGA_v2.0_scaffold231G43443 Striga asiatica HOM05D004582 ORTHO05D005507 1.3e-52 209.5 110 83.6
TPR.G31176 Trifolium pratense HOM05D004582 ORTHO05D005507 1.3e-52 209.5 116 81.0
Gohir.D13G059000 Gossypium hirsutum HOM05D004582 ORTHO05D005507 1.8e-52 209.1 115 80.0
Gohir.A13G062900 Gossypium hirsutum HOM05D004582 ORTHO05D005507 3.0e-52 208.4 115 79.1
MD04G1047800 Malus domestica HOM05D004582 ORTHO05D005507 3.0e-52 208.4 114 79.8
Medtr3g092730 Medicago truncatula HOM05D004582 ORTHO05D005507 3.0e-52 208.4 115 81.7
Medtr3g092770 Medicago truncatula HOM05D004582 ORTHO05D005507 3.0e-52 208.4 115 81.7
CAN.G419.18 Capsicum annuum HOM05D004582 ORTHO05D005507 3.9e-52 208.0 114 78.9
ECA246G1034 Erigeron canadensis HOM05D004582 ORTHO05D005507 1.5e-51 206.1 110 84.5
SalBow6G5789 Salvia bowleyana HOM05D004582 ORTHO05D005507 1.5e-51 206.1 110 83.6
SalBow8G4318 Salvia bowleyana HOM05D004582 ORTHO05D005507 1.5e-51 206.1 110 83.6
Migut.N02765 Erythranthe guttata HOM05D004582 ORTHO05D005507 1.9e-51 205.7 110 83.6
MD09G1278200 Malus domestica HOM05D004582 ORTHO05D005507 1.9e-51 205.7 112 82.1
BcaB01g05655 Brassica carinata HOM05D004582 ORTHO05D005507 2.5e-51 205.3 115 81.7
A03p03980 Brassica napus HOM05D004582 ORTHO05D005507 2.5e-51 205.3 115 81.7
C03p04450 Brassica napus HOM05D004582 ORTHO05D005507 2.5e-51 205.3 115 81.7
MBI11_g25051_MAGBIO Magnolia biondii HOM05D004582 ORTHO05D005507 3.3e-51 204.9 110 83.6
MSTRG.1036 Avicennia marina HOM05D004582 ORTHO05D005507 4.3e-51 204.5 110 81.8
BcaB01g05582 Brassica carinata HOM05D004582 ORTHO05D005507 5.7e-51 204.1 115 80.9
Peaxi162Scf00329g00317 Petunia axillaris HOM05D004582 ORTHO05D005507 7.4e-51 203.8 114 78.1
HanXRQChr15g0475831 Helianthus annuus HOM05D004582 ORTHO05D005507 9.7e-51 203.4 110 82.7
MD17G1271200 Malus domestica HOM05D004582 ORTHO05D005507 2.2e-50 202.2 112 80.4
Hma1.2p1_1901F.1_g307030 Hydrangea macrophylla HOM05D004582 ORTHO05D005507 8.2e-50 200.3 103 85.4
Nitab4.5_0000129g0010 Nicotiana tabacum HOM05D004582 ORTHO05D005507 8.2e-50 200.3 114 76.3
unitig_749.g13837 Utricularia gibba HOM05D004582 ORTHO05D005507 6.9e-49 197.2 110 78.2
Cfa008860 Carpinus fangiana HOM05D002331 ORTHO05D002624 9.0e-49 196.8 100 88.0
Duzib132G0727 Durio zibethinus HOM05D004582 ORTHO05D005507 2.0e-48 195.7 101 85.1
ATR0693G307 Amborella trichopoda HOM05D004582 ORTHO05D005507 3.4e-48 194.9 110 76.4
PSO541G0162 Papaver somniferum HOM05D004582 ORTHO05D005507 4.5e-48 194.5 110 77.3
PSO675G8561 Papaver somniferum HOM05D004582 ORTHO05D005507 4.5e-48 194.5 110 77.3
HPP92_027251 Vanilla planifolia HOM05D004582 ORTHO05D005507 5.9e-48 194.1 110 78.2
ClCG05G012130 Citrullus lanatus HOM05D004582 ORTHO05D005507 7.7e-48 193.7 100 85.0
FvH4_4g10630 Fragaria vesca HOM05D004582 ORTHO05D005507 7.7e-48 193.7 112 76.8
FAN07G0418 Fragaria x ananassa HOM05D004582 ORTHO05D005507 7.7e-48 193.7 112 76.8
FAN12G0218 Fragaria x ananassa HOM05D004582 ORTHO05D005507 7.7e-48 193.7 112 76.8
FAN12G1626 Fragaria x ananassa HOM05D004582 ORTHO05D005507 7.7e-48 193.7 112 76.8
FAN17G0627 Fragaria x ananassa HOM05D004582 ORTHO05D005507 7.7e-48 193.7 112 76.8
Aqoxy3G01747 Aquilegia oxysepala HOM05D004582 ORTHO05D005507 1.0e-47 193.4 109 76.1
Gorai.013G066800 Gossypium raimondii HOM05D004582 ORTHO05D005507 1.3e-47 193.0 151 60.9
Os07g0623400 Oryza sativa ssp. japonica HOM05D004582 ORTHO05D005507 1.7e-47 192.6 110 76.4
RcHm_v2.0_Chr4g0406241 Rosa chinensis HOM05D004582 ORTHO05D005507 1.7e-47 192.6 112 75.9
Aqoxy5G02794 Aquilegia oxysepala HOM05D004582 ORTHO05D005507 3.8e-47 191.4 109 76.1
AUR62032890 Chenopodium quinoa HOM05D004582 ORTHO05D005507 5.0e-47 191.0 110 79.1
Atru.chr6.1863 Acer truncatum HOM05D004582 ORTHO05D005507 8.5e-47 190.3 100 84.0
COL.COLO4_33156 Corchorus olitorius HOM05D004582 ORTHO05D005507 1.1e-46 189.9 100 83.0
PSO339G5842 Papaver somniferum HOM05D004582 ORTHO05D005507 1.9e-46 189.1 110 76.4
SEGI_05202 Sequoiadendron giganteum HOM05D004582 ORTHO05D005507 2.5e-46 188.7 110 71.8
SGA_v2.0_scaffold417G51254 Striga asiatica HOM05D004582 ORTHO05D005507 4.2e-46 188.0 96 85.4
Atru.chr11.31 Acer truncatum HOM05D004582 ORTHO05D005507 9.4e-46 186.8 100 82.0
HanXRQChr01g0026751 Helianthus annuus HOM05D004582 ORTHO05D005507 3.6e-45 184.9 110 74.5
HanXRQChr01g0026901 Helianthus annuus HOM05D004582 ORTHO05D005507 3.6e-45 184.9 110 74.5
DCAR_026806 Daucus carota HOM05D004582 ORTHO05D005507 4.6e-45 184.5 104 76.9
FAN22G0072 Fragaria x ananassa HOM05D004582 ORTHO05D005507 1.4e-44 183.0 112 75.0
BolC2t12361H Brassica oleracea HOM05D004582 ORTHO05D005507 1.8e-44 182.6 126 71.4
SalBow6G4393 Salvia bowleyana HOM05D004582 ORTHO05D005507 4.3e-43 177.9 111 69.4
SalBow8G4232 Salvia bowleyana HOM05D004582 ORTHO05D005507 4.3e-43 177.9 111 69.4
CDE07G1374 Ceratophyllum demersum HOM05D004582 ORTHO05D005507 9.7e-43 176.8 95 82.1
Dinv17660 Davidia involucrata HOM05D004582 ORTHO05D005507 1.1e-41 173.3 91 83.5
SGA_v2.0_scaffold14G06942 Striga asiatica HOM05D004582 ORTHO05D005507 1.1e-41 173.3 140 58.6
Mapoly0092s0011 Marchantia polymorpha HOM05D004582 ORTHO05D005507 6.9e-41 170.6 112 67.0
Pp3c6_2640 Physcomitrium patens HOM05D004582 ORTHO05D005507 3.4e-40 168.3 107 64.5
AagrBONN_evm.TU.Sc2ySwM_344.5487 Anthoceros agrestis HOM05D004582 ORTHO05D005507 1.3e-39 166.4 107 66.4
Mapoly0166s0006 Marchantia polymorpha HOM05D004582 ORTHO05D005507 1.7e-39 166.0 111 65.8
CARHR204400 Cardamine hirsuta HOM05D004582 ORTHO05D005507 1.1e-38 163.3 95 78.9
SMO358G0649 Selaginella moellendorffii HOM05D004582 ORTHO05D005507 1.4e-38 162.9 108 66.7
Ah.11g040470 Amaranthus hybridus HOM05D004582 ORTHO05D005507 9.4e-38 160.2 129 61.2
QL03p073673 Quercus lobata HOM05D004582 ORTHO05D005507 3.6e-37 158.3 75 89.3
Oeu039967.1 Olea europaea HOM05D004582 ORTHO05D005507 7.9e-37 157.1 79 84.8
Oeu002508.1 Olea europaea HOM05D004582 ORTHO05D005507 1.4e-36 156.4 78 85.9
CiPaw.05G123600 Carya illinoinensis HOM05D004582 ORTHO05D005507 2.6e-35 152.1 79 87.3
Thhalv10015347m.g Eutrema salsugineum HOM05D004582 ORTHO05D005507 1.7e-34 149.4 79 84.8
EL10Ac9g23021 Beta vulgaris HOM05D004582 ORTHO05D005507 2.2e-34 149.1 75 84.0
ATR0772G012 Amborella trichopoda HOM05D004582 ORTHO05D005507 8.2e-34 147.1 74 82.4
SEGI_39424 Sequoiadendron giganteum HOM05D004582 ORTHO05D005507 1.1e-30 136.7 74 75.7
MCO11G500 Micromonas commoda HOM05D004582 ORTHO05D005507 2.1e-29 132.5 100 53.0
CBR_g44398 Chara braunii HOM05D004582 ORTHO05D005507 1.0e-28 130.2 93 60.2
Sabra10G0198500 Salix brachista HOM05D004582 ORTHO05D005507 7.4e-27 124.0 100 66.0
Sc06g0007290 Simmondsia chinensis HOM05D004582 ORTHO05D005507 9.7e-27 123.6 96 63.5
PRCOL_00005197 Prasinoderma coloniale HOM05D004582 ORTHO05D005507 1.6e-24 116.3 95 49.5
Lj5g0002326 Lotus japonicus HOM05D004582 ORTHO05D005507 2.6e-24 115.5 63 81.0
Lj5g0003678 Lotus japonicus HOM05D004582 ORTHO05D005507 2.6e-24 115.5 63 81.0
Lj5g0005298 Lotus japonicus HOM05D004582 ORTHO05D005507 2.6e-24 115.5 63 81.0
Nitab4.5_0008730g0050 Nicotiana tabacum HOM05D004582 ORTHO05D005507 2.6e-24 115.5 78 69.2
Nitab4.5_0000129g0060 Nicotiana tabacum HOM05D004582 ORTHO05D005507 1.7e-23 112.8 79 67.1
Cre02.g116300 Chlamydomonas reinhardtii HOM05D004582 ORTHO05D005507 2.6e-19 99.0 108 41.7
BcaB01g05656 Brassica carinata HOM05D000467 ORTHO05D000379 6.3e-18 94.4 61 72.1
MD07G1114100 Malus domestica HOM05D004582 ORTHO05D005507 9.1e-17 90.5 57 71.9
Haze_26483 Corylus avellana HOM05D004582 ORTHO05D005507 4.5e-16 88.2 88 40.9
Haze_11883 Corylus avellana HOM05D004582 ORTHO05D005507 7.7e-16 87.4 81 58.0
Rhsim12G0090000 Rhododendron simsii HOM05D004582 ORTHO05D005507 8.5e-15 84.0 155 38.7
Cfa023443 Carpinus fangiana HOM05D004582 ORTHO05D123741 1.8e-12 76.3 83 41.0
Lsat_1_v5_gn_1_108420 Lactuca sativa HOM05D004582 ORTHO05D005507 1.5e-11 73.2 41 78.0
Nitab4.5_0011163g0030 Nicotiana tabacum HOM05D004582 ORTHO05D005507 8.3e-10 67.4 78 47.4
Cpa.g.sc887.1 Carica papaya HOM05D004582 ORTHO05D005507 7.7e-08 60.8 36 72.2


User provided reference genes

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