Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6g0014292 Lotus japonicus HOM05D004549 ORTHO05D005390 3.0e-103 378.6 205 100.0
Lj6g0007818 Lotus japonicus HOM05D004549 ORTHO05D005390 1.1e-92 343.6 208 93.8
Glyma.11G245400 Glycine max HOM05D004549 ORTHO05D005390 2.9e-66 255.8 212 75.0
VMungo1383G1841 Vigna mungo HOM05D004549 ORTHO05D005390 6.5e-66 254.6 209 71.8
QL03p055962 Quercus lobata HOM05D004549 ORTHO05D005390 6.0e-64 248.1 210 71.9
Ca_25121_v3 Cicer arietinum L. HOM05D004549 ORTHO05D005390 1.0e-63 247.3 211 73.5
arahy.Tifrunner.gnm1.ann1.J2LHWB Arachis hypogaea HOM05D004549 ORTHO05D005390 6.7e-63 244.6 208 68.8
Gohir.D01G153400 Gossypium hirsutum HOM05D004549 ORTHO05D005390 1.5e-62 243.4 210 69.5
Gorai.002G190000 Gossypium raimondii HOM05D004549 ORTHO05D005390 1.5e-62 243.4 210 69.5
Dinv11022 Davidia involucrata HOM05D004549 ORTHO05D005390 1.9e-62 243.0 202 69.3
Manes.13G019200 Manihot esculenta HOM05D004549 ORTHO05D005390 1.9e-62 243.0 206 70.9
Gohir.A01G156900 Gossypium hirsutum HOM05D004549 ORTHO05D005390 3.3e-62 242.3 210 69.0
TWI18G0700 Tripterygium wilfordii HOM05D004549 ORTHO05D005390 4.3e-62 241.9 208 69.7
Duzib251G0883 Durio zibethinus HOM05D004549 ORTHO05D005390 5.7e-62 241.5 211 68.7
TWI36G1485 Tripterygium wilfordii HOM05D004549 ORTHO05D005390 5.7e-62 241.5 209 68.9
Haze_12303 Corylus avellana HOM05D004549 ORTHO05D005390 9.6e-62 240.7 209 72.2
Phvul.001G257100 Phaseolus vulgaris HOM05D004549 ORTHO05D005390 9.6e-62 240.7 203 69.5
Lalb_Chr11g0075581 Lupinus albus HOM05D004549 ORTHO05D005390 1.3e-61 240.4 214 67.8
Nn4g22506 Nelumbo nucifera HOM05D004549 ORTHO05D005390 1.3e-61 240.4 208 68.8
Lalb_Chr07g0185571 Lupinus albus HOM05D004549 ORTHO05D005390 1.6e-61 240.0 209 69.9
TAR622G0384 Trochodendron aralioides HOM05D004549 ORTHO05D005390 6.3e-61 238.0 205 68.8
MD16G1106800 Malus domestica HOM05D004549 ORTHO05D005390 1.1e-60 237.3 198 70.7
Thecc.02G268400 Theobroma cacao HOM05D004549 ORTHO05D005390 1.1e-60 237.3 210 67.1
CiPaw.11G070800 Carya illinoinensis HOM05D004549 ORTHO05D005390 1.4e-60 236.9 204 67.6
Oeu009692.1 Olea europaea HOM05D004549 ORTHO05D005390 4.1e-60 235.3 205 67.8
Hma1.2p1_0079F.1_g041330 Hydrangea macrophylla HOM05D004549 ORTHO05D005390 5.3e-60 235.0 208 66.3
Psat5g094200 Pisum sativum HOM05D004549 ORTHO05D005390 5.3e-60 235.0 209 70.3
COL.COLO4_23543 Corchorus olitorius HOM05D004549 ORTHO05D005390 6.9e-60 234.6 211 66.4
Oeu004470.1 Olea europaea HOM05D004549 ORTHO05D005390 6.9e-60 234.6 205 67.3
Potri.010G052000 Populus trichocarpa HOM05D004549 ORTHO05D005390 6.9e-60 234.6 208 68.3
Atru.chr11.2199 Acer truncatum HOM05D004549 ORTHO05D005390 1.2e-59 233.8 209 68.4
ClCG08G017510 Citrullus lanatus HOM05D004549 ORTHO05D005390 1.2e-59 233.8 208 67.3
Duzib268G0224 Durio zibethinus HOM05D004549 ORTHO05D005390 1.5e-59 233.4 210 67.6
TAR374G0110 Trochodendron aralioides HOM05D004549 ORTHO05D005390 2.0e-59 233.0 207 66.7
MD13G1106700 Malus domestica HOM05D004549 ORTHO05D005390 2.6e-59 232.6 199 69.3
Manes.12G018800 Manihot esculenta HOM05D004549 ORTHO05D005390 2.6e-59 232.6 206 67.0
Cfa009269 Carpinus fangiana HOM05D004549 ORTHO05D005390 3.4e-59 232.3 211 71.1
Medtr3g086230 Medicago truncatula HOM05D004549 ORTHO05D005390 3.4e-59 232.3 209 71.8
CsaV3_2G025120 Cucumis sativus L. HOM05D004549 ORTHO05D005390 5.9e-59 231.5 208 66.3
Oeu059785.1 Olea europaea HOM05D004549 ORTHO05D005390 7.6e-59 231.1 210 66.2
MBI11_g33737_MAGBIO Magnolia biondii HOM05D004549 ORTHO05D005390 1.0e-58 230.7 207 65.2
Ciclev10032789m.g Citrus clementina HOM05D004549 ORTHO05D005390 1.3e-58 230.3 207 67.6
MELO3C010708.2 Cucumis melo HOM05D004549 ORTHO05D005390 1.7e-58 229.9 209 66.5
CSS0012497 Camellia sinensis var. sinensis HOM05D004549 ORTHO05D005390 2.2e-58 229.6 209 66.0
Nitab4.5_0008037g0010 Nicotiana tabacum HOM05D004549 ORTHO05D005390 2.9e-58 229.2 206 69.4
CANSAT01G2573 Cannabis sativa HOM05D004549 ORTHO05D005390 8.5e-58 227.6 215 64.2
Psat7g059720 Pisum sativum HOM05D004549 ORTHO05D005390 1.4e-57 226.9 212 66.5
CAN.G959.23 Capsicum annuum HOM05D004549 ORTHO05D005390 1.9e-57 226.5 210 67.1
Potri.008G181900 Populus trichocarpa HOM05D004549 ORTHO05D005390 3.2e-57 225.7 198 66.7
Prupe.1G239600 Prunus persica HOM05D004549 ORTHO05D005390 4.2e-57 225.3 206 69.9
VMungo0251G3559 Vigna mungo HOM05D004549 ORTHO05D005390 5.5e-57 224.9 210 66.2
Phvul.002G253700 Phaseolus vulgaris HOM05D004549 ORTHO05D005390 9.3e-57 224.2 211 66.4
Medtr8g089610 Medicago truncatula HOM05D004549 ORTHO05D005390 1.6e-56 223.4 209 67.9
Peaxi162Scf00128g00628 Petunia axillaris HOM05D004549 ORTHO05D005390 1.6e-56 223.4 209 65.6
Sabra08G0138600 Salix brachista HOM05D004549 ORTHO05D005390 2.1e-56 223.0 200 65.0
Aqoxy5G03620 Aquilegia oxysepala HOM05D004549 ORTHO05D005390 7.9e-56 221.1 209 63.6
Lalb_Chr23g0277771 Lupinus albus HOM05D004549 ORTHO05D005390 7.9e-56 221.1 215 64.7
Rhsim12G0037700 Rhododendron simsii HOM05D004549 ORTHO05D005390 7.9e-56 221.1 206 64.6
Sed0013558 Sechium edule HOM05D004549 ORTHO05D005390 7.9e-56 221.1 211 65.9
PGSC0003DMG400007201 Solanum tuberosum HOM05D004549 ORTHO05D005390 7.9e-56 221.1 207 65.7
Cpa.g.sc122.10 Carica papaya HOM05D004549 ORTHO05D005390 1.0e-55 220.7 204 68.6
TPR.G6278 Trifolium pratense HOM05D004549 ORTHO05D005390 1.0e-55 220.7 210 64.8
Glyma.05G172300 Glycine max HOM05D004549 ORTHO05D005390 1.3e-55 220.3 207 66.2
PSO017G6717 Papaver somniferum HOM05D004549 ORTHO05D005390 1.3e-55 220.3 210 62.4
PSO478G3953 Papaver somniferum HOM05D004549 ORTHO05D005390 1.3e-55 220.3 210 62.4
Eucgr.B03236 Eucalyptus grandis HOM05D004549 ORTHO05D005390 3.0e-55 219.2 207 65.2
Glyma.18G011800 Glycine max HOM05D004549 ORTHO05D005390 5.1e-55 218.4 210 65.2
Cc11_g16230 Coffea canephora HOM05D004549 ORTHO05D005390 1.5e-54 216.9 202 64.9
Aqoxy3G01353 Aquilegia oxysepala HOM05D004549 ORTHO05D005390 3.3e-54 215.7 200 64.0
PGR102G3304 Punica granatum HOM05D004549 ORTHO05D005390 9.7e-54 214.2 209 63.6
Sopen10g028800 Solanum pennellii HOM05D004549 ORTHO05D005390 1.3e-53 213.8 207 64.3
Actinidia08109 Actinidia chinensis HOM05D004549 ORTHO05D005390 1.6e-53 213.4 208 63.5
EL10As2g23198 Beta vulgaris HOM05D004549 ORTHO05D005390 1.6e-53 213.4 208 62.0
Sed0000703 Sechium edule HOM05D004549 ORTHO05D005390 8.2e-53 211.1 204 63.7
RcHm_v2.0_Chr4g0432261 Rosa chinensis HOM05D004549 ORTHO05D005390 1.1e-52 210.7 211 61.1
HanXRQChr17g0540101 Helianthus annuus HOM05D004549 ORTHO05D005390 1.4e-52 210.3 204 61.8
TWI75G1071 Tripterygium wilfordii HOM05D004549 ORTHO05D005390 1.4e-52 210.3 208 62.0
Ah.03g133600 Amaranthus hybridus HOM05D004549 ORTHO05D005390 1.8e-52 209.9 211 60.7
Lsat_1_v5_gn_3_29100 Lactuca sativa HOM05D004549 ORTHO05D005390 5.3e-52 208.4 204 61.8
CsaV3_5G030690 Cucumis sativus L. HOM05D004549 ORTHO05D005354 2.0e-51 206.5 205 64.4
Ca_17796_v3 Cicer arietinum L. HOM05D004549 ORTHO05D005390 3.4e-51 205.7 206 61.7
FvH4_4g25080 Fragaria vesca HOM05D004549 ORTHO05D005390 5.9e-51 204.9 208 58.7
FAN12G3122 Fragaria x ananassa HOM05D004549 ORTHO05D005390 5.9e-51 204.9 208 58.7
MELO3C011911.2 Cucumis melo HOM05D004549 ORTHO05D005390 1.0e-50 204.1 205 64.9
Peaxi162Scf00797g00002 Petunia axillaris HOM05D004549 ORTHO05D005390 1.3e-50 203.8 207 64.7
FAN17G2166 Fragaria x ananassa HOM05D004549 ORTHO05D005390 2.9e-50 202.6 208 59.1
MSTRG.13333 Avicennia marina HOM05D004549 ORTHO05D005390 8.5e-50 201.1 210 60.5
FAN22G0462 Fragaria x ananassa HOM05D004549 ORTHO05D005390 1.1e-49 200.7 208 58.2
FAN22G0861 Fragaria x ananassa HOM05D004549 ORTHO05D005390 1.1e-49 200.7 208 58.2
SGA_v2.0_scaffold391G50640 Striga asiatica HOM05D002973 ORTHO05D003383 1.1e-49 200.7 206 63.1
FAN07G0129 Fragaria x ananassa HOM05D004549 ORTHO05D005390 1.4e-49 200.3 208 58.7
ECA246G5237 Erigeron canadensis HOM05D004549 ORTHO05D005390 3.2e-49 199.1 204 62.3
SGA_v2.0_scaffold87G27112 Striga asiatica HOM05D004549 ORTHO05D005390 3.2e-49 199.1 208 60.6
ATR0824G259 Amborella trichopoda HOM05D004549 ORTHO05D005390 4.2e-49 198.7 198 60.1
Migut.E00226 Erythranthe guttata HOM05D004549 ORTHO05D005390 3.6e-48 195.7 206 63.6
SalBow8G0177 Salvia bowleyana HOM05D004549 ORTHO05D005390 4.6e-48 195.3 212 59.4
Duzib248G1249 Durio zibethinus HOM05D004549 ORTHO05D005390 2.6e-46 189.5 176 66.5
THA.LOC104807755 Tarenaya hassleriana HOM05D004549 ORTHO05D005390 2.6e-46 189.5 208 59.6
CDE06G0408 Ceratophyllum demersum HOM05D004549 ORTHO05D005390 9.7e-46 187.6 205 59.0
Ah.02g130410 Amaranthus hybridus HOM05D004549 ORTHO05D005390 1.3e-45 187.2 206 56.8
BcaB03g15371 Brassica carinata HOM05D004549 ORTHO05D005390 1.7e-45 186.8 218 58.3
unitig_744.g24296 Utricularia gibba HOM05D004549 ORTHO05D005390 2.8e-45 186.0 209 62.2
CDE08G0789 Ceratophyllum demersum HOM05D004549 ORTHO05D005390 3.7e-45 185.7 205 60.0
Sc11g0000800 Simmondsia chinensis HOM05D004549 ORTHO05D005390 4.8e-45 185.3 209 59.8
AUR62005536 Chenopodium quinoa HOM05D004549 ORTHO05D005390 6.3e-45 184.9 209 58.9
C06p38460 Brassica napus HOM05D004549 ORTHO05D005390 1.4e-44 183.7 218 56.4
BolC6t38943H Brassica oleracea HOM05D004549 ORTHO05D005390 1.4e-44 183.7 218 56.4
AUR62024202 Chenopodium quinoa HOM05D004549 ORTHO05D005390 1.4e-44 183.7 210 58.1
A07p32430 Brassica napus HOM05D004549 ORTHO05D005390 5.3e-44 181.8 214 56.1
BraA07t30866Z Brassica rapa HOM05D004549 ORTHO05D005390 5.3e-44 181.8 214 56.1
unitig_62.g23660 Utricularia gibba HOM05D004549 ORTHO05D005390 5.3e-44 181.8 206 60.7
Thhalv10019165m.g Eutrema salsugineum HOM05D004549 ORTHO05D005390 3.4e-43 179.1 214 56.5
BcaC03g14868 Brassica carinata HOM05D004549 ORTHO05D005390 7.7e-43 177.9 213 56.3
A02p14440 Brassica napus HOM05D004549 ORTHO05D005390 7.7e-43 177.9 213 55.9
C02p23390 Brassica napus HOM05D004549 ORTHO05D005390 7.7e-43 177.9 213 56.3
BolC2t08472H Brassica oleracea HOM05D004549 ORTHO05D005390 7.7e-43 177.9 213 56.3
BraA02t06507Z Brassica rapa HOM05D004549 ORTHO05D005390 1.0e-42 177.6 213 56.3
BcaB05g24311 Brassica carinata HOM05D004549 ORTHO05D005390 1.3e-42 177.2 219 55.3
TPR.G35846 Trifolium pratense HOM05D004549 ORTHO05D005390 5.0e-42 175.3 182 67.6
BcaC08g46043 Brassica carinata HOM05D004549 ORTHO05D005390 6.5e-42 174.9 190 56.8
Sp5g22750 Schrenkiella parvula HOM05D004549 ORTHO05D005390 5.5e-41 171.8 216 55.6
CARHR060320 Cardamine hirsuta HOM05D004549 ORTHO05D005390 2.7e-40 169.5 198 55.1
Aa31LG4G12260 Aethionema arabicum HOM05D004549 ORTHO05D005390 1.0e-39 167.5 206 54.4
CSS0014809 Camellia sinensis var. sinensis HOM05D004549 ORTHO05D005390 1.0e-39 167.5 204 56.9
HPP92_017052 Vanilla planifolia HOM05D004549 ORTHO05D005390 2.3e-39 166.4 207 56.0
BolC6t39200H Brassica oleracea HOM05D004549 ORTHO05D005390 3.0e-39 166.0 211 54.5
SEGI_41357 Sequoiadendron giganteum HOM05D004549 ORTHO05D005390 6.7e-39 164.9 142 64.8
BcaB03g15168 Brassica carinata HOM05D004549 ORTHO05D005390 8.8e-39 164.5 212 52.8
A07p34290 Brassica napus HOM05D004549 ORTHO05D005390 2.8e-37 159.5 211 52.6
C06p42290 Brassica napus HOM05D004549 ORTHO05D005390 2.8e-37 159.5 213 53.1
BraA07t31058Z Brassica rapa HOM05D004549 ORTHO05D005390 2.8e-37 159.5 213 52.1
BcaC08g46197 Brassica carinata HOM05D004549 ORTHO05D005390 6.3e-37 158.3 213 53.5
Mapoly0083s0047 Marchantia polymorpha HOM05D004549 ORTHO05D005390 8.2e-37 157.9 181 53.6
Os08g0119800 Oryza sativa ssp. japonica HOM05D004549 ORTHO05D005390 5.0e-34 148.7 118 69.5
CDE09G1301 Ceratophyllum demersum HOM05D004549 ORTHO05D005390 1.8e-31 140.2 205 47.8
Nn3g16614 Nelumbo nucifera HOM05D004549 ORTHO05D005390 1.2e-30 137.5 120 65.8
Pp3c23_21280 Physcomitrium patens HOM05D004549 ORTHO05D005390 5.7e-30 135.2 179 44.1
Pp3c24_20010 Physcomitrium patens HOM05D004549 ORTHO05D005390 1.7e-29 133.7 160 45.6
AagrBONN_evm.TU.Sc2ySwM_117.3039 Anthoceros agrestis HOM05D004985 ORTHO05D005912 4.8e-29 132.1 161 50.3
AL2G26440 Arabidopsis lyrata HOM05D004549 ORTHO05D005390 4.8e-29 132.1 210 48.1
AT1G67740 Arabidopsis thaliana HOM05D004549 ORTHO05D005390 4.8e-29 132.1 210 47.6
Carub.0002s1417 Capsella rubella HOM05D004549 ORTHO05D005390 4.8e-29 132.1 208 47.1
CBR_g38912 Chara braunii HOM05D004549 ORTHO05D005390 6.3e-29 131.7 141 54.6
Ciclev10022422m.g Citrus clementina HOM05D004549 ORTHO05D005390 1.8e-28 130.2 187 47.1
Pp3c8_24120 Physcomitrium patens HOM05D004549 ORTHO05D005390 2.0e-27 126.7 210 38.1
SMO137G0014 Selaginella moellendorffii HOM05D004549 ORTHO05D005390 1.2e-24 117.5 145 47.6
Prupe.5G159900 Prunus persica HOM05D004549 ORTHO05D005390 1.3e-21 107.5 126 51.6
Sc04g0001060 Simmondsia chinensis HOM05D004549 ORTHO05D005390 2.8e-21 106.3 149 49.7
Medtr2g046810 Medicago truncatula HOM05D004549 ORTHO05D005390 8.3e-21 104.8 154 54.5
Zm00001eb261260 Zea mays HOM05D004549 ORTHO05D005390 1.8e-20 103.6 203 40.4
Zm00001eb173510 Zea mays HOM05D004549 ORTHO05D005390 3.1e-20 102.8 144 48.6
FAN18G0098 Fragaria x ananassa HOM05D004549 ORTHO05D005390 2.9e-18 96.3 132 45.5
RcHm_v2.0_Chr7g0191491 Rosa chinensis HOM05D004549 ORTHO05D005390 8.6e-18 94.7 132 47.0
Ah.08g218300 Amaranthus hybridus HOM05D004549 ORTHO05D005390 4.2e-17 92.4 159 42.8
FAN08G1783 Fragaria x ananassa HOM05D004549 ORTHO05D005390 8.0e-16 88.2 110 49.1
unitig_52.g17185 Utricularia gibba HOM05D004549 ORTHO05D005390 2.3e-15 86.7 83 63.9
AUR62001261 Chenopodium quinoa HOM05D004549 ORTHO05D005390 8.8e-15 84.7 108 48.1
PRCOL_00004421 Prasinoderma coloniale HOM05D004549 ORTHO05D005390 4.9e-13 79.0 125 40.0
Solyc10g077120.3 Solanum lycopersicum HOM05D004549 ORTHO05D005390 2.4e-12 76.6 87 55.2
Cre10.g452100 Chlamydomonas reinhardtii HOM05D004549 ORTHO05D005390 2.8e-08 63.2 139 35.3
MCO16G101 Micromonas commoda HOM05D004549 ORTHO05D005390 4.0e-07 59.3 122 32.8


User provided reference genes

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