Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6g0008950 Lotus japonicus HOM05D019244 ORTHO05D036501 2.7e-200 701.8 361 100.0
LjContig00272g0003214 Lotus japonicus HOM05D019244 ORTHO05D036501 2.2e-146 522.7 298 93.0
Lj4g0019865 Lotus japonicus HOM05D019244 ORTHO05D036501 1.7e-21 107.8 125 48.8
Lj6g0007004 Lotus japonicus HOM05D019244 ORTHO05D010358 2.0e-17 94.4 169 37.3
Lj5g0010437 Lotus japonicus HOM05D019244 ORTHO05D237054 2.2e-16 90.9 42 97.6
Lj6g0001789 Lotus japonicus HOM05D019244 ORTHO05D010358 2.2e-16 90.9 127 45.7
Lj4g0013144 Lotus japonicus HOM05D008220 ORTHO05D010358 5.0e-13 79.7 88 43.2
Lj1g0018935 Lotus japonicus HOM05D008220 ORTHO05D010358 5.5e-12 76.3 90 41.1
Lj6g0001371 Lotus japonicus HOM05D008220 ORTHO05D010358 6.1e-11 72.8 96 38.5
Lj3g0010325 Lotus japonicus HOM05D008220 ORTHO05D010358 1.0e-10 72.0 96 38.5
LjContig00583g0009142 Lotus japonicus HOM05D008220 ORTHO05D010358 2.3e-10 70.9 105 40.0
Lj2g0019090 Lotus japonicus HOM05D008220 ORTHO05D010358 3.0e-10 70.5 101 41.6
Ah.08g219500 Amaranthus hybridus HOM05D008762 ORTHO05D011252 4.0e-10 70.1 83 42.2
Lj5g0015440 Lotus japonicus HOM05D008220 ORTHO05D010358 5.2e-10 69.7 88 39.8
Lj6g0001845 Lotus japonicus HOM05D008220 ORTHO05D010358 5.2e-10 69.7 87 42.5
Lj5g0003527 Lotus japonicus HOM05D019244 ORTHO05D010358 6.8e-10 69.3 86 45.3
Lj1g0011459 Lotus japonicus HOM05D008220 ORTHO05D010358 2.0e-09 67.8 79 41.8
LjContig00141g0011294 Lotus japonicus HOM05D008220 ORTHO05D010358 2.6e-09 67.4 99 36.4
Ah.02g117550 Amaranthus hybridus HOM05D008762 ORTHO05D011252 3.4e-09 67.0 105 35.2
Lj3g0019996 Lotus japonicus HOM05D008220 ORTHO05D010358 1.3e-08 65.1 79 35.4
Lj5g0003699 Lotus japonicus HOM05D008220 ORTHO05D010358 1.7e-08 64.7 116 33.6
Lj6g0014297 Lotus japonicus HOM05D008220 ORTHO05D010358 3.7e-08 63.5 91 36.3
Ah.15g100500 Amaranthus hybridus HOM05D008762 ORTHO05D011252 1.1e-07 62.0 175 29.7
Lj3g0023441 Lotus japonicus HOM05D008220 ORTHO05D010358 1.1e-07 62.0 89 36.0
Ah.01g013230 Amaranthus hybridus HOM05D008762 ORTHO05D011252 1.4e-07 61.6 86 38.4
Lj3g0027860 Lotus japonicus HOM05D008220 ORTHO05D010358 2.4e-07 60.8 79 35.4
LjContig00127g0011774 Lotus japonicus HOM05D008220 ORTHO05D010358 2.4e-07 60.8 79 35.4
LjContig00357g0008125 Lotus japonicus HOM05D008220 ORTHO05D010358 2.4e-07 60.8 79 40.5
Ah.03g145270 Amaranthus hybridus HOM05D008762 ORTHO05D011252 3.1e-07 60.5 105 32.4
Ah.10g026690 Amaranthus hybridus HOM05D008762 ORTHO05D011252 3.1e-07 60.5 82 32.9
Ah.06g183510 Amaranthus hybridus HOM05D008762 ORTHO05D011252 4.1e-07 60.1 82 35.4
Ah.07g201540 Amaranthus hybridus HOM05D008762 ORTHO05D011252 4.1e-07 60.1 84 34.5
Phvul.001G267100 Phaseolus vulgaris HOM05D000142 ORTHO05D000124 4.1e-07 60.1 98 38.8
CiPaw.01G117200 Carya illinoinensis HOM05D000142 ORTHO05D000124 5.4e-07 59.7 110 33.6
Ciclev10019850m.g Citrus clementina HOM05D000142 ORTHO05D000124 5.4e-07 59.7 125 35.2
Lj1g0026317 Lotus japonicus HOM05D008220 ORTHO05D010358 5.4e-07 59.7 77 37.7
Lj4g0014288 Lotus japonicus HOM05D008220 ORTHO05D010358 5.4e-07 59.7 79 35.4
Lj5g0026451 Lotus japonicus HOM05D008220 ORTHO05D010358 5.4e-07 59.7 79 41.8
arahy.Tifrunner.gnm1.ann1.F01EC9 Arachis hypogaea HOM05D000142 ORTHO05D000124 7.0e-07 59.3 94 37.2
arahy.Tifrunner.gnm1.ann1.JG8SFN Arachis hypogaea HOM05D000142 ORTHO05D000124 9.2e-07 58.9 94 37.2
Glyma.05G020900 Glycine max HOM05D000142 ORTHO05D000124 9.2e-07 58.9 84 39.3
Glyma.17G078400 Glycine max HOM05D000142 ORTHO05D000124 9.2e-07 58.9 84 39.3
Ah.16g108500 Amaranthus hybridus HOM05D008762 ORTHO05D011252 1.2e-06 58.5 110 29.1
Ah.06g186480 Amaranthus hybridus HOM05D008762 ORTHO05D011252 1.6e-06 58.2 80 36.2
Ah.11g045590 Amaranthus hybridus HOM05D000851 ORTHO05D003960 1.6e-06 58.2 82 34.1
Ah.11g047760 Amaranthus hybridus HOM05D000142 ORTHO05D000124 1.6e-06 58.2 94 40.4
Ah.12g063050 Amaranthus hybridus HOM05D000030 ORTHO05D000009 1.6e-06 58.2 83 32.5
Glyma.18G002000 Glycine max HOM05D000142 ORTHO05D000124 1.6e-06 58.2 98 35.7
Sed0000437 Sechium edule HOM05D000142 ORTHO05D000124 1.6e-06 58.2 81 42.0
Solyc10g086150.2 Solanum lycopersicum HOM05D000142 ORTHO05D001253 1.6e-06 58.2 134 32.1
Sopen10g035530 Solanum pennellii HOM05D000142 ORTHO05D001253 1.6e-06 58.2 134 32.1
BcaC04g23466 Brassica carinata HOM05D000142 ORTHO05D000124 2.0e-06 57.8 92 37.0
A09p07200 Brassica napus HOM05D000142 ORTHO05D000124 2.0e-06 57.8 92 37.0
C09p08040 Brassica napus HOM05D000142 ORTHO05D000124 2.0e-06 57.8 92 37.0
BolC9t53718H Brassica oleracea HOM05D000142 ORTHO05D000124 2.0e-06 57.8 92 37.0
BraA09t36369Z Brassica rapa HOM05D000142 ORTHO05D000124 2.0e-06 57.8 92 37.0
Ca_14346_v3 Cicer arietinum L. HOM05D000142 ORTHO05D000124 2.0e-06 57.8 84 40.5
Manes.06G084600 Manihot esculenta HOM05D000142 ORTHO05D000124 2.0e-06 57.8 98 35.7
A03p46730 Brassica napus HOM05D000142 ORTHO05D000124 2.7e-06 57.4 83 38.6
C07p44770 Brassica napus HOM05D000139 ORTHO05D000103 2.7e-06 57.4 83 38.6
BolC7t45001H Brassica oleracea HOM05D000142 ORTHO05D000124 2.7e-06 57.4 83 38.6
BraA03t13795Z Brassica rapa HOM05D000139 ORTHO05D000103 2.7e-06 57.4 83 38.6
Glyma.11G255000 Glycine max HOM05D000142 ORTHO05D000124 2.7e-06 57.4 85 36.5
Lju41C3T3 Lonicera japonica HOM05D000142 ORTHO05D000124 2.7e-06 57.4 111 35.1
vmacro15814 Vaccinium macrocarpon HOM05D000561 ORTHO05D000514 2.7e-06 57.4 79 36.7
MSTRG.3004 Avicennia marina HOM05D000142 ORTHO05D000124 4.5e-06 56.6 86 38.4
Thhalv10007819m.g Eutrema salsugineum HOM05D000561 ORTHO05D000514 4.5e-06 56.6 146 27.4
Lj1g0011765 Lotus japonicus HOM05D008220 ORTHO05D010358 4.5e-06 56.6 91 40.7
Lalb_Chr13g0302851 Lupinus albus HOM05D000142 ORTHO05D000124 4.5e-06 56.6 84 41.7
Nn2g10828 Nelumbo nucifera HOM05D000142 ORTHO05D001253 4.5e-06 56.6 132 35.6
Phvul.003G184700 Phaseolus vulgaris HOM05D000142 ORTHO05D000124 4.5e-06 56.6 84 38.1
Sp2g24330 Schrenkiella parvula HOM05D000142 ORTHO05D000124 4.5e-06 56.6 83 38.6
Ah.10g037270 Amaranthus hybridus HOM05D005124 ORTHO05D005914 5.9e-06 56.2 149 29.5
Ah.11g040120 Amaranthus hybridus HOM05D008762 ORTHO05D011252 5.9e-06 56.2 82 34.1
Potri.001G319900 Populus trichocarpa HOM05D000142 ORTHO05D000124 5.9e-06 56.2 85 32.9
Zm00001eb386170 Zea mays HOM05D000428 ORTHO05D000582 5.9e-06 56.2 128 29.7
Ah.08g221330 Amaranthus hybridus HOM05D008762 ORTHO05D011252 7.8e-06 55.8 101 30.7
Ah.14g081710 Amaranthus hybridus HOM05D008762 ORTHO05D011252 7.8e-06 55.8 80 37.5
MSTRG.4475 Avicennia marina HOM05D000142 ORTHO05D000124 7.8e-06 55.8 92 37.0
Dinv12350 Davidia involucrata HOM05D000142 ORTHO05D007638 7.8e-06 55.8 81 38.3
Eucgr.A02571 Eucalyptus grandis HOM05D000142 ORTHO05D007638 7.8e-06 55.8 206 28.2
Hma1.2p1_0673F.1_g201260 Hydrangea macrophylla HOM05D000561 ORTHO05D000514 7.8e-06 55.8 79 36.7
Sabra16G0202600 Salix brachista HOM05D000142 ORTHO05D000124 7.8e-06 55.8 85 32.9
VMungo1215G1468 Vigna mungo HOM05D000142 ORTHO05D000124 7.8e-06 55.8 81 39.5


User provided reference genes

Program Settings