Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6C827T5 Lonicera japonica HOM05D006443 ORTHO05D007797 1.6e-241 839.0 407 100.0
CSS0008831 Camellia sinensis var. sinensis HOM05D006443 ORTHO05D007797 4.5e-143 511.9 414 65.0
CSS0026603 Camellia sinensis var. sinensis HOM05D006443 ORTHO05D007797 4.5e-143 511.9 414 65.0
QL03p052624 Quercus lobata HOM05D006443 ORTHO05D007797 7.6e-143 511.1 413 65.4
Actinidia30647 Actinidia chinensis HOM05D006443 ORTHO05D007797 1.9e-141 506.5 414 66.9
Haze_12422 Corylus avellana HOM05D006443 ORTHO05D007797 9.3e-141 504.2 409 64.1
Cfa009372 Carpinus fangiana HOM05D006443 ORTHO05D007797 1.0e-139 500.7 409 63.8
Hma1.2p1_0065F.1_g035440 Hydrangea macrophylla HOM05D006443 ORTHO05D007797 1.5e-138 496.9 414 63.0
GSVIVG01010487001 Vitis vinifera HOM05D006443 ORTHO05D007797 4.3e-138 495.4 406 64.8
TWI36G0197 Tripterygium wilfordii HOM05D006443 ORTHO05D007797 5.6e-138 495.0 414 62.6
PGR119G0512 Punica granatum HOM05D006443 ORTHO05D007797 2.1e-137 493.0 403 64.8
MD13G1119500 Malus domestica HOM05D006443 ORTHO05D007797 8.1e-137 491.1 414 63.3
CiPaw.05G109500 Carya illinoinensis HOM05D006443 ORTHO05D007797 9.0e-136 487.6 409 63.6
Ciclev10031911m.g Citrus clementina HOM05D006443 ORTHO05D007797 2.0e-135 486.5 414 62.8
Duzib248G1079 Durio zibethinus HOM05D006443 ORTHO05D007797 2.6e-135 486.1 404 62.4
Prupe.1G225500 Prunus persica HOM05D006443 ORTHO05D007797 5.8e-135 485.0 414 62.8
COL.COLO4_20406 Corchorus olitorius HOM05D006443 ORTHO05D007797 1.7e-134 483.4 404 63.4
Atru.chr11.2327 Acer truncatum HOM05D006443 ORTHO05D007797 2.9e-134 482.6 416 63.2
Gorai.012G175900 Gossypium raimondii HOM05D006443 ORTHO05D007797 3.8e-134 482.3 404 63.1
Gohir.D04G182900 Gossypium hirsutum HOM05D006443 ORTHO05D007797 6.4e-134 481.5 404 62.9
Gohir.A04G139700 Gossypium hirsutum HOM05D006443 ORTHO05D007797 1.2e-132 477.2 404 62.4
Potri.003G171900 Populus trichocarpa HOM05D006443 ORTHO05D007797 1.3e-131 473.8 414 62.1
Thecc.02G208000 Theobroma cacao HOM05D006443 ORTHO05D007797 1.3e-131 473.8 404 62.6
HanXRQChr08g0207841 Helianthus annuus HOM05D006443 ORTHO05D007797 8.7e-131 471.1 414 61.4
Sabra03G0125800 Salix brachista HOM05D006443 ORTHO05D007797 1.1e-130 470.7 414 61.4
Cpa.g.sc43.60 Carica papaya HOM05D006443 ORTHO05D007797 1.5e-130 470.3 404 62.1
RcHm_v2.0_Chr4g0430211 Rosa chinensis HOM05D006443 ORTHO05D007797 3.3e-130 469.2 414 61.4
SGA_v2.0_scaffold9G04677 Striga asiatica HOM05D006443 ORTHO05D007797 2.1e-129 466.5 424 60.1
MELO3C011863.2 Cucumis melo HOM05D006443 ORTHO05D007797 2.8e-129 466.1 406 62.3
FvH4_4g23730 Fragaria vesca HOM05D006443 ORTHO05D007797 2.8e-129 466.1 414 61.4
Peaxi162Scf00359g00713 Petunia axillaris HOM05D006443 ORTHO05D007797 3.7e-129 465.7 414 60.9
Nn4g22309 Nelumbo nucifera HOM05D006443 ORTHO05D007797 8.2e-129 464.5 417 59.7
Sopen04g017520 Solanum pennellii HOM05D006443 ORTHO05D007797 1.1e-128 464.2 404 60.9
FAN07G1264 Fragaria x ananassa HOM05D006443 ORTHO05D007797 4.0e-128 462.2 412 60.4
Migut.K00736 Erythranthe guttata HOM05D006443 ORTHO05D007797 6.9e-128 461.5 414 61.1
FAN22G2300 Fragaria x ananassa HOM05D006443 ORTHO05D007797 9.0e-128 461.1 412 60.7
Solyc04g045590.3 Solanum lycopersicum HOM05D006443 ORTHO05D007797 9.0e-128 461.1 404 60.6
Nitab4.5_0008905g0010 Nicotiana tabacum HOM05D006443 ORTHO05D007797 2.0e-127 459.9 402 60.2
MSTRG.502 Avicennia marina HOM05D006443 ORTHO05D007797 2.6e-127 459.5 411 59.4
CANSAT01G1158 Cannabis sativa HOM05D006443 ORTHO05D007797 4.5e-127 458.8 414 60.1
Sc14g0009070 Simmondsia chinensis HOM05D006443 ORTHO05D007797 7.6e-127 458.0 404 60.6
Cc11_g16930 Coffea canephora HOM05D006443 ORTHO05D007797 3.8e-126 455.7 414 60.6
Oeu058924.1 Olea europaea HOM05D006443 ORTHO05D007797 3.8e-126 455.7 411 60.1
CAN.G237.4 Capsicum annuum HOM05D006443 ORTHO05D007797 6.5e-126 454.9 404 59.7
Actinidia08069 Actinidia chinensis HOM05D006443 ORTHO05D007797 7.1e-125 451.4 418 61.2
PSO017G6191 Papaver somniferum HOM05D006443 ORTHO05D007797 7.1e-125 451.4 405 59.3
Eucgr.H04637 Eucalyptus grandis HOM05D006443 ORTHO05D007797 9.3e-125 451.1 404 59.4
PSO478G2155 Papaver somniferum HOM05D006443 ORTHO05D007797 2.1e-124 449.9 405 59.3
MBI11_g05329_MAGBIO Magnolia biondii HOM05D006443 ORTHO05D007797 6.0e-124 448.4 400 59.5
THA.LOC104807130 Tarenaya hassleriana HOM05D006443 ORTHO05D007797 2.3e-123 446.4 415 58.8
Hund06091 Selenicereus undatus HOM05D006443 ORTHO05D007797 3.9e-123 445.7 408 60.5
Aqoxy5G03367 Aquilegia oxysepala HOM05D006443 ORTHO05D007797 1.1e-122 444.1 416 58.9
Ca_16457_v3 Cicer arietinum L. HOM05D006443 ORTHO05D007797 4.3e-122 442.2 415 58.3
ECA233G2512 Erigeron canadensis HOM05D006443 ORTHO05D007797 3.7e-121 439.1 393 61.8
Phvul.001G262100 Phaseolus vulgaris HOM05D006443 ORTHO05D007797 4.8e-121 438.7 415 57.6
Psat5g096400 Pisum sativum HOM05D006443 ORTHO05D007797 1.4e-120 437.2 415 58.1
Glyma.18G006200 Glycine max HOM05D006443 ORTHO05D007797 2.4e-120 436.4 405 58.0
Thhalv10008060m.g Eutrema salsugineum HOM05D006443 ORTHO05D007797 4.1e-120 435.6 416 57.2
BcaB08g37422 Brassica carinata HOM05D006443 ORTHO05D007797 5.3e-120 435.3 417 58.0
Nitab4.5_0001356g0010 Nicotiana tabacum HOM05D006443 ORTHO05D007797 6.9e-120 434.9 391 58.6
BraA09t41778Z Brassica rapa HOM05D006443 ORTHO05D007797 9.0e-120 434.5 414 58.0
Glyma.11G250800 Glycine max HOM05D006443 ORTHO05D007797 2.0e-119 433.3 405 57.3
Lalb_Chr11g0075761 Lupinus albus HOM05D006443 ORTHO05D007797 4.5e-119 432.2 414 57.2
VMungo1383G0397 Vigna mungo HOM05D006443 ORTHO05D007797 4.5e-119 432.2 415 56.9
Medtr3g085290 Medicago truncatula HOM05D006443 ORTHO05D007797 1.7e-118 430.3 416 57.7
arahy.Tifrunner.gnm1.ann1.DXN1WG Arachis hypogaea HOM05D006443 ORTHO05D007797 5.0e-118 428.7 417 57.1
arahy.Tifrunner.gnm1.ann1.P16M7J Arachis hypogaea HOM05D006443 ORTHO05D007797 5.0e-118 428.7 417 57.1
BolC8t52335H Brassica oleracea HOM05D006443 ORTHO05D007797 5.0e-118 428.7 415 57.6
FAN17G1989 Fragaria x ananassa HOM05D006443 ORTHO05D007797 5.0e-118 428.7 466 53.0
TPR.G17786 Trifolium pratense HOM05D006443 ORTHO05D007797 1.1e-117 427.6 416 57.7
CARHR012120 Cardamine hirsuta HOM05D006443 ORTHO05D007797 1.4e-117 427.2 414 57.5
BcaC07g41759 Brassica carinata HOM05D006443 ORTHO05D007797 2.5e-117 426.4 415 57.3
Carub.0001s1145 Capsella rubella HOM05D006443 ORTHO05D007797 9.4e-117 424.5 416 56.7
AUR62005622 Chenopodium quinoa HOM05D006443 ORTHO05D007797 9.4e-117 424.5 407 57.7
AL1G22970 Arabidopsis lyrata HOM05D006443 ORTHO05D007797 1.6e-116 423.7 417 56.8
AT1G11780 Arabidopsis thaliana HOM05D006443 ORTHO05D007797 2.1e-116 423.3 415 56.6
Lj6g0022486 Lotus japonicus HOM05D006443 ORTHO05D007797 3.6e-116 422.5 420 56.4
Lsat_1_v5_gn_4_56020 Lactuca sativa HOM05D006443 ORTHO05D007797 4.6e-116 422.2 415 58.6
Aa31LG1G3790 Aethionema arabicum HOM05D006443 ORTHO05D007797 2.3e-115 419.9 415 56.4
CDE05G3615 Ceratophyllum demersum HOM05D006443 ORTHO05D007797 5.1e-115 418.7 408 55.4
Sp1g10410 Schrenkiella parvula HOM05D006443 ORTHO05D007797 2.5e-114 416.4 416 56.7
ClCG11G013630 Citrullus lanatus HOM05D006443 ORTHO05D007797 3.7e-113 412.5 406 56.4
Manes.13G011800 Manihot esculenta HOM05D006443 ORTHO05D007797 1.5e-111 407.1 369 59.6
vmacro19384 Vaccinium macrocarpon HOM05D006443 ORTHO05D007797 1.9e-109 400.2 431 54.8
unitig_747.g21126 Utricularia gibba HOM05D006443 ORTHO05D007797 3.9e-107 392.5 390 57.2
Sed0000233 Sechium edule HOM05D006443 ORTHO05D007797 9.7e-106 387.9 366 58.5
ATR0561G191 Amborella trichopoda HOM05D006443 ORTHO05D007797 4.1e-104 382.5 375 53.9
C08p47970 Brassica napus HOM05D006443 ORTHO05D007797 6.5e-102 375.2 370 55.4
A09p64340 Brassica napus HOM05D004937 ORTHO05D007797 1.2e-100 370.9 353 57.2
AUR62028926 Chenopodium quinoa HOM05D006443 ORTHO05D007797 2.0e-98 363.6 360 56.7
EL10Ac6g13506 Beta vulgaris HOM05D006443 ORTHO05D007797 8.2e-97 358.2 362 56.6
Rhsim12G0099900 Rhododendron simsii HOM05D006443 ORTHO05D007797 2.6e-95 353.2 305 61.0
Zm00001eb169540 Zea mays HOM05D006443 ORTHO05D007797 5.5e-93 345.5 416 49.8
CsaV3_5G030250 Cucumis sativus L. HOM05D006443 ORTHO05D007797 2.1e-92 343.6 303 61.7
Dinv17565 Davidia involucrata HOM05D006443 ORTHO05D007797 1.4e-91 340.9 302 63.6
TAR629G0791 Trochodendron aralioides HOM05D006443 ORTHO05D007797 8.0e-84 315.1 247 64.0
SEGI_28427 Sequoiadendron giganteum HOM05D006443 ORTHO05D007797 1.3e-81 307.8 410 47.1
SMO196G0120 Selaginella moellendorffii HOM05D006443 ORTHO05D007797 3.8e-78 296.2 405 44.2
SalBow1G6802 Salvia bowleyana HOM05D006443 ORTHO05D007797 3.3e-77 293.1 292 55.8
SalBow2G0214 Salvia bowleyana HOM05D006443 ORTHO05D007797 3.3e-77 293.1 292 55.8
Os11g0488500 Oryza sativa ssp. japonica HOM05D006443 ORTHO05D007797 1.6e-76 290.8 366 48.4
Mapoly0036s0054 Marchantia polymorpha HOM05D006443 ORTHO05D007797 8.0e-76 288.5 464 40.5
AagrBONN_evm.TU.Sc2ySwM_228.5822 Anthoceros agrestis HOM05D006443 ORTHO05D007797 2.4e-72 276.9 406 42.4
Pp3c15_20640 Physcomitrium patens HOM05D006443 ORTHO05D007797 3.6e-68 263.1 443 38.4
DCAR_031205 Daucus carota HOM05D006443 ORTHO05D007797 1.4e-59 234.6 199 62.8
Hma1.2p1_0065F.1_g035450 Hydrangea macrophylla HOM05D006443 ORTHO05D007797 1.4e-56 224.6 147 74.8
DCAR_031204 Daucus carota HOM05D006443 ORTHO05D007797 2.9e-49 200.3 128 73.4
CSS0019305 Camellia sinensis var. sinensis HOM05D006443 ORTHO05D007797 3.2e-48 196.8 175 60.6
CSS0017614 Camellia sinensis var. sinensis HOM05D006443 ORTHO05D007797 1.6e-47 194.5 175 59.4
CBR_g32330 Chara braunii HOM05D006443 ORTHO05D007797 4.3e-45 186.4 638 27.7
ClCG11G013640 Citrullus lanatus HOM05D006443 ORTHO05D007797 1.1e-40 171.8 100 82.0
Cre06.g278198 Chlamydomonas reinhardtii HOM05D006443 ORTHO05D007797 5.6e-29 132.9 249 34.9
CSS0022605 Camellia sinensis var. sinensis HOM05D006443 ORTHO05D007797 1.2e-26 125.2 98 66.3
MCO14G547 Micromonas commoda HOM05D006443 ORTHO05D007797 1.1e-21 108.6 139 40.3
PRCOL_00005324 Prasinoderma coloniale HOM05D006443 ORTHO05D007797 1.1e-19 102.1 259 29.7
C08p48190 Brassica napus HOM05D006443 ORTHO05D007797 1.2e-18 98.6 93 52.7
BolC8t52352H Brassica oleracea HOM05D006443 ORTHO05D007797 4.5e-18 96.7 93 51.6
Rhsim12G0100100 Rhododendron simsii HOM05D006443 ORTHO05D007797 1.0e-17 95.5 103 53.4
FAN12G3107 Fragaria x ananassa HOM05D006443 ORTHO05D007797 7.1e-16 89.4 92 55.4
C08p46980 Brassica napus HOM05D006443 ORTHO05D007797 1.1e-13 82.0 61 62.3
BolC8t52235H Brassica oleracea HOM05D006443 ORTHO05D007797 1.1e-13 82.0 61 62.3
CSS0049531 Camellia sinensis var. sinensis HOM05D001731 ORTHO05D000001 4.3e-13 80.1 48 77.1
TAR629G0787 Trochodendron aralioides HOM05D006443 ORTHO05D007797 8.2e-12 75.9 71 62.0
Cfa001627 Carpinus fangiana HOM05D006443 ORTHO05D007797 6.9e-11 72.8 142 33.1
Gorai.011G130100 Gossypium raimondii HOM05D003341 ORTHO05D003603 3.2e-08 63.9 179 33.0
VMungo0331G2034 Vigna mungo HOM05D003341 ORTHO05D003603 7.1e-08 62.8 151 29.1
HanXRQChr09g0271981 Helianthus annuus HOM05D003341 ORTHO05D003603 9.3e-08 62.4 167 29.3
CARHR089000 Cardamine hirsuta HOM05D003341 ORTHO05D003603 1.2e-07 62.0 139 34.5
Gohir.D10G118300 Gossypium hirsutum HOM05D003341 ORTHO05D003603 2.1e-07 61.2 179 32.4
VMungo0331G1094 Vigna mungo HOM05D003341 ORTHO05D003603 2.1e-07 61.2 151 29.1
Phvul.001G131400 Phaseolus vulgaris HOM05D003341 ORTHO05D003603 2.7e-07 60.8 142 31.0
CsaV3_3G031290 Cucumis sativus L. HOM05D003341 ORTHO05D003603 6.1e-07 59.7 183 26.8
CsaV3_UNG227930 Cucumis sativus L. HOM05D003341 ORTHO05D003603 6.1e-07 59.7 183 26.8
Migut.I01109 Erythranthe guttata HOM05D003341 ORTHO05D003603 6.1e-07 59.7 66 47.0
CARHR089020 Cardamine hirsuta HOM05D003341 ORTHO05D003603 7.9e-07 59.3 182 31.3
HanXRQChr16g0530111 Helianthus annuus HOM05D003341 ORTHO05D003603 1.0e-06 58.9 166 28.3
BraA05t22341Z Brassica rapa HOM05D003341 ORTHO05D003603 1.3e-06 58.5 145 30.3
HanXRQChr09g0266581 Helianthus annuus HOM05D003341 ORTHO05D003603 1.3e-06 58.5 166 28.9
Manes.11G015800 Manihot esculenta HOM05D003341 ORTHO05D003603 1.3e-06 58.5 119 32.8
A05p35310 Brassica napus HOM05D003341 ORTHO05D003603 1.8e-06 58.2 145 30.3
COL.COLO4_36103 Corchorus olitorius HOM05D003341 ORTHO05D003603 1.8e-06 58.2 102 33.3
HanXRQChr11g0341861 Helianthus annuus HOM05D003341 ORTHO05D003603 1.8e-06 58.2 166 28.9
Psat5g189880 Pisum sativum HOM05D003341 ORTHO05D003603 1.8e-06 58.2 130 31.5
AL3G26390 Arabidopsis lyrata HOM05D003341 ORTHO05D003603 2.3e-06 57.8 135 30.4
HanXRQChr09g0276521 Helianthus annuus HOM05D003341 ORTHO05D003603 2.3e-06 57.8 162 27.2
MELO3C025799.2 Cucumis melo HOM05D003341 ORTHO05D003603 3.0e-06 57.4 183 26.2
MSTRG.5521 Avicennia marina HOM05D003341 ORTHO05D003603 3.9e-06 57.0 183 26.2
Migut.J00071 Erythranthe guttata HOM05D003341 ORTHO05D003603 3.9e-06 57.0 150 30.0
Sp3g12400 Schrenkiella parvula HOM05D003341 ORTHO05D003603 3.9e-06 57.0 148 30.4
AT3G14160 Arabidopsis thaliana HOM05D003341 ORTHO05D003603 5.1e-06 56.6 135 31.9
Atru.chr8.2366 Acer truncatum HOM05D003341 ORTHO05D003603 6.7e-06 56.2 172 28.5
Eucgr.J02616 Eucalyptus grandis HOM05D003341 ORTHO05D003603 6.7e-06 56.2 159 29.6
Gohir.A10G148300 Gossypium hirsutum HOM05D003341 ORTHO05D003603 6.7e-06 56.2 89 38.2
THA.LOC104815616 Tarenaya hassleriana HOM05D003341 ORTHO05D003603 8.7e-06 55.8 101 36.6


User provided reference genes

Program Settings