Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6C67T4 Lonicera japonica HOM05D005801 ORTHO05D008555 8.5e-108 393.7 195 100.0
Lj4P387T11 Lonicera japonica HOM05D005801 ORTHO05D008555 8.8e-73 277.3 177 80.2
Dinv36686 Davidia involucrata HOM05D005801 ORTHO05D008555 2.4e-70 269.2 188 72.9
TAR636G1320 Trochodendron aralioides HOM05D005801 ORTHO05D008555 4.3e-67 258.5 189 70.9
CSS0008146 Camellia sinensis var. sinensis HOM05D005801 ORTHO05D008555 1.2e-66 256.9 188 69.7
ECA234G2262 Erigeron canadensis HOM05D005801 ORTHO05D008555 6.8e-65 251.1 179 70.4
FAN23G0343 Fragaria x ananassa HOM05D005801 ORTHO05D008555 6.8e-65 251.1 189 70.4
FAN28G2516 Fragaria x ananassa HOM05D005801 ORTHO05D008555 1.2e-64 250.4 189 69.8
FvH4_1g06150 Fragaria vesca HOM05D005801 ORTHO05D008555 1.5e-64 250.0 189 69.8
FAN19G1715 Fragaria x ananassa HOM05D005801 ORTHO05D008555 1.5e-64 250.0 189 69.8
Oeu053186.1 Olea europaea HOM05D005801 ORTHO05D008555 1.5e-64 250.0 186 69.9
Sabra18G0076100 Salix brachista HOM05D005801 ORTHO05D008555 1.5e-64 250.0 189 68.8
TWI63G0976 Tripterygium wilfordii HOM05D005801 ORTHO05D008555 2.6e-64 249.2 189 69.8
RcHm_v2.0_Chr2g0091911 Rosa chinensis HOM05D005801 ORTHO05D008555 3.4e-64 248.8 189 69.3
Potri.018G087800 Populus trichocarpa HOM05D005801 ORTHO05D008555 5.7e-64 248.1 189 68.8
FAN26G1315 Fragaria x ananassa HOM05D005801 ORTHO05D008555 7.5e-64 247.7 189 69.8
FAN26G1273 Fragaria x ananassa HOM05D005801 ORTHO05D008555 2.2e-63 246.1 189 68.8
VMungo0251G1949 Vigna mungo HOM05D005801 ORTHO05D008555 2.2e-63 246.1 192 67.2
FAN19G0317 Fragaria x ananassa HOM05D005801 ORTHO05D008555 2.9e-63 245.7 189 68.8
Thecc.09G100600 Theobroma cacao HOM05D005801 ORTHO05D008555 2.9e-63 245.7 189 68.3
vmacro06253 Vaccinium macrocarpon HOM05D005801 ORTHO05D008555 2.9e-63 245.7 180 70.0
Cc06_g10480 Coffea canephora HOM05D005801 ORTHO05D008555 3.7e-63 245.4 170 74.7
MBI04_g34406_MAGBIO Magnolia biondii HOM05D005801 ORTHO05D008555 3.7e-63 245.4 189 67.7
Duzib150G1339 Durio zibethinus HOM05D005801 ORTHO05D008555 1.1e-62 243.8 189 68.8
Manes.16G108700 Manihot esculenta HOM05D005801 ORTHO05D008555 1.1e-62 243.8 189 67.7
DCAR_028663 Daucus carota HOM05D005801 ORTHO05D008555 1.4e-62 243.4 188 68.6
CiPaw.04G157900 Carya illinoinensis HOM05D005801 ORTHO05D008555 2.4e-62 242.7 189 69.3
AUR62010892 Chenopodium quinoa HOM05D005801 ORTHO05D008555 2.4e-62 242.7 192 64.6
COL.COLO4_34743 Corchorus olitorius HOM05D005801 ORTHO05D008555 2.4e-62 242.7 189 68.8
Ca_17365_v3 Cicer arietinum L. HOM05D005801 ORTHO05D008555 3.2e-62 242.3 192 66.7
Duzib132G0722 Durio zibethinus HOM05D005801 ORTHO05D008555 5.4e-62 241.5 189 68.8
Glyma.08G033500 Glycine max HOM05D005801 ORTHO05D008555 5.4e-62 241.5 176 70.5
Migut.K00541 Erythranthe guttata HOM05D005801 ORTHO05D008555 9.2e-62 240.7 181 70.7
PSO832G4312 Papaver somniferum HOM05D005801 ORTHO05D008555 9.2e-62 240.7 178 70.2
Rhsim03G0236600 Rhododendron simsii HOM05D005801 ORTHO05D008555 9.2e-62 240.7 177 69.5
GSVIVG01015302001 Vitis vinifera HOM05D005801 ORTHO05D008555 9.2e-62 240.7 163 74.2
Cfa003179 Carpinus fangiana HOM05D005801 ORTHO05D008555 1.2e-61 240.4 189 67.2
Nitab4.5_0000066g0110 Nicotiana tabacum HOM05D005801 ORTHO05D008555 1.2e-61 240.4 175 70.3
QL02p041581 Quercus lobata HOM05D005801 ORTHO05D008555 1.2e-61 240.4 189 67.7
Ciclev10007826m.g Citrus clementina HOM05D005801 ORTHO05D008555 1.6e-61 240.0 183 68.9
PSO063G7511 Papaver somniferum HOM05D005801 ORTHO05D008555 2.0e-61 239.6 178 69.7
EL10Ac8g18377 Beta vulgaris HOM05D005801 ORTHO05D008555 2.7e-61 239.2 169 72.8
Gohir.A07G009500 Gossypium hirsutum HOM05D005801 ORTHO05D008555 2.7e-61 239.2 189 69.3
Gohir.D07G009800 Gossypium hirsutum HOM05D005801 ORTHO05D008555 2.7e-61 239.2 189 69.3
HanXRQChr10g0318941 Helianthus annuus HOM05D005801 ORTHO05D008555 2.7e-61 239.2 173 71.7
HanXRQChr14g0438761 Helianthus annuus HOM05D005801 ORTHO05D008555 2.7e-61 239.2 173 71.7
Peaxi162Scf00720g00044 Petunia axillaris HOM05D005801 ORTHO05D008555 2.7e-61 239.2 180 68.3
Lj4g0016627 Lotus japonicus HOM05D005801 ORTHO05D008555 3.5e-61 238.8 192 66.1
MD15G1196600 Malus domestica HOM05D005801 ORTHO05D008555 3.5e-61 238.8 189 67.2
Phvul.002G308600 Phaseolus vulgaris HOM05D005801 ORTHO05D008555 3.5e-61 238.8 176 70.5
Aqoxy7G01401 Aquilegia oxysepala HOM05D005801 ORTHO05D008555 4.6e-61 238.4 188 66.0
Lsat_1_v5_gn_5_144900 Lactuca sativa HOM05D005801 ORTHO05D008555 4.6e-61 238.4 178 69.7
Nitab4.5_0001703g0010 Nicotiana tabacum HOM05D005801 ORTHO05D008555 5.9e-61 238.0 175 69.7
Sopen05g014540 Solanum pennellii HOM05D005801 ORTHO05D008555 5.9e-61 238.0 186 65.1
AUR62021403 Chenopodium quinoa HOM05D005801 ORTHO05D008555 7.8e-61 237.7 183 65.6
SalBow1G2797 Salvia bowleyana HOM05D005801 ORTHO05D008555 1.0e-60 237.3 167 73.1
MSTRG.10602 Avicennia marina HOM05D005801 ORTHO05D008555 1.3e-60 236.9 179 69.3
CAN.G370.29 Capsicum annuum HOM05D005801 ORTHO05D008555 1.3e-60 236.9 187 66.3
Psat7g016720 Pisum sativum HOM05D005801 ORTHO05D008555 1.7e-60 236.5 180 68.3
HanXRQChr10g0318931 Helianthus annuus HOM05D005801 ORTHO05D008555 3.0e-60 235.7 173 70.5
MD02G1065700 Malus domestica HOM05D005801 ORTHO05D008555 3.0e-60 235.7 192 66.1
Medtr8g102480 Medicago truncatula HOM05D005801 ORTHO05D008555 3.0e-60 235.7 181 68.0
Solyc05g017990.4 Solanum lycopersicum HOM05D005801 ORTHO05D008555 3.0e-60 235.7 186 64.5
Cpa.g.sc40.94 Carica papaya HOM05D005801 ORTHO05D008555 5.0e-60 235.0 189 66.7
Gorai.001G010100 Gossypium raimondii HOM05D005801 ORTHO05D008555 5.0e-60 235.0 189 68.8
PGSC0003DMG400038162 Solanum tuberosum HOM05D005801 ORTHO05D008555 6.6e-60 234.6 186 64.5
CANSAT21G1751 Cannabis sativa HOM05D005801 ORTHO05D008555 8.6e-60 234.2 167 70.1
arahy.Tifrunner.gnm1.ann1.BF4XTR Arachis hypogaea HOM05D005801 ORTHO05D008555 1.1e-59 233.8 163 73.6
CsaV3_1G039790 Cucumis sativus L. HOM05D005801 ORTHO05D008555 1.9e-59 233.0 184 66.8
Lalb_Chr05g0223241 Lupinus albus HOM05D005801 ORTHO05D008555 1.9e-59 233.0 177 69.5
Prupe.7G219800 Prunus persica HOM05D005801 ORTHO05D008555 1.9e-59 233.0 190 66.3
ATR0681G166 Amborella trichopoda HOM05D005801 ORTHO05D008555 5.6e-59 231.5 187 66.3
MELO3C015412.2 Cucumis melo HOM05D005801 ORTHO05D008555 5.6e-59 231.5 186 64.5
Zm00001eb371210 Zea mays HOM05D005801 ORTHO05D008555 5.6e-59 231.5 167 67.7
THA.LOC104814572 Tarenaya hassleriana HOM05D005801 ORTHO05D008555 7.3e-59 231.1 186 64.0
Sed0027809 Sechium edule HOM05D005801 ORTHO05D008555 1.6e-58 229.9 180 66.1
HPP92_009088 Vanilla planifolia HOM05D005801 ORTHO05D008555 1.6e-58 229.9 187 64.7
Eucgr.C00997 Eucalyptus grandis HOM05D005801 ORTHO05D008555 6.2e-58 228.0 170 70.6
unitig_46.g18397 Utricularia gibba HOM05D005801 ORTHO05D008555 2.3e-57 226.1 178 66.9
AL3G48350 Arabidopsis lyrata HOM05D005801 ORTHO05D008555 8.9e-57 224.2 186 63.4
Sc18g0001500 Simmondsia chinensis HOM05D005801 ORTHO05D008555 1.2e-56 223.8 178 62.9
CARHR110310 Cardamine hirsuta HOM05D005801 ORTHO05D008555 2.0e-56 223.0 178 64.6
Thhalv10002296m.g Eutrema salsugineum HOM05D005801 ORTHO05D008555 2.6e-56 222.6 186 62.4
Sp3g33210 Schrenkiella parvula HOM05D005801 ORTHO05D008555 2.6e-56 222.6 178 64.6
AT2G19870 Arabidopsis thaliana HOM05D005801 ORTHO05D008555 4.4e-56 221.9 186 63.4
Carub.0003s3414 Capsella rubella HOM05D005801 ORTHO05D008555 9.8e-56 220.7 186 62.9
SGA_v2.0_scaffold129G34141 Striga asiatica HOM05D005801 ORTHO05D008555 1.3e-55 220.3 184 65.2
CDE04G1187 Ceratophyllum demersum HOM05D005801 ORTHO05D008555 2.2e-55 219.5 184 60.9
FvH4_1g06190 Fragaria vesca HOM05D005801 ORTHO05D008555 6.4e-55 218.0 157 71.3
BcaB03g16775 Brassica carinata HOM05D005801 ORTHO05D008555 7.0e-54 214.5 178 64.6
BcaC06g36648 Brassica carinata HOM05D005801 ORTHO05D008555 7.0e-54 214.5 178 64.6
BolC7t40588H Brassica oleracea HOM05D005801 ORTHO05D008555 7.0e-54 214.5 178 64.6
BraA07t27882Z Brassica rapa HOM05D005801 ORTHO05D008555 7.0e-54 214.5 178 64.6
Aa31LG8G16820 Aethionema arabicum HOM05D005801 ORTHO05D008555 2.0e-53 213.0 163 65.0
A07p00840 Brassica napus HOM05D005801 ORTHO05D008555 2.7e-53 212.6 178 64.0
C07p01810 Brassica napus HOM05D005801 ORTHO05D008555 1.0e-52 210.7 178 63.5
SHI02689 Sapria himalayana HOM05D005801 ORTHO05D008555 1.3e-52 210.3 168 64.9
Actinidia32650 Actinidia chinensis HOM05D005801 ORTHO05D008555 2.9e-47 192.6 188 58.0
Lalb_Chr09g0331541 Lupinus albus HOM05D005801 ORTHO05D008555 3.9e-44 182.2 182 56.6
Mapoly0135s0034 Marchantia polymorpha HOM05D005801 ORTHO05D008555 3.3e-43 179.1 190 48.4
Pp3c17_17180 Physcomitrium patens HOM05D005801 ORTHO05D008555 4.3e-43 178.7 184 50.0
CBR_g20364 Chara braunii HOM05D005801 ORTHO05D008555 1.2e-42 177.2 177 51.4
CAN.G640.23 Capsicum annuum HOM05D005801 ORTHO05D008555 2.4e-41 172.9 187 51.3
SMO367G0373 Selaginella moellendorffii HOM05D005801 ORTHO05D008555 2.7e-37 159.5 163 51.5
Os01g0742000 Oryza sativa ssp. japonica HOM05D005801 ORTHO05D008555 1.6e-29 133.7 98 70.4
CDE02G3237 Ceratophyllum demersum HOM05D005801 ORTHO05D008555 2.7e-29 132.9 119 58.8
Cre13.g566150 Chlamydomonas reinhardtii HOM05D005801 ORTHO05D008555 2.3e-28 129.8 167 43.1
PRCOL_00003145 Prasinoderma coloniale HOM05D005801 ORTHO05D008555 3.3e-27 125.9 183 42.1
MCO03G539 Micromonas commoda HOM05D005801 ORTHO05D008555 4.0e-25 119.0 184 38.6
Ca_28666_v3 Cicer arietinum L. HOM05D005801 ORTHO05D009370 1.6e-10 70.5 169 32.0
CAN.G1277.2 Capsicum annuum HOM05D005801 ORTHO05D008555 6.2e-10 68.6 134 35.8


User provided reference genes

Program Settings