Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6C4T5 Lonicera japonica HOM05D004447 ORTHO05D005973 2.2e-47 191.8 89 100.0
Lj6C14T1 Lonicera japonica HOM05D004447 ORTHO05D005973 1.3e-42 176.0 89 89.9
Lj2C632T3 Lonicera japonica HOM05D004447 ORTHO05D005973 7.7e-32 140.2 70 85.7
Aqoxy5G02409 Aquilegia oxysepala HOM05D004447 ORTHO05D005973 3.6e-29 131.3 80 72.5
Dinv22185 Davidia involucrata HOM05D004447 ORTHO05D005973 1.0e-28 129.8 79 73.4
DCAR_031545 Daucus carota HOM05D004447 ORTHO05D005973 2.3e-28 128.6 72 80.6
TAR636G2291 Trochodendron aralioides HOM05D004447 ORTHO05D005973 1.5e-27 125.9 71 78.9
MD03G1176600 Malus domestica HOM05D004447 ORTHO05D005973 3.3e-27 124.8 71 77.5
Sabra09G0039600 Salix brachista HOM05D004447 ORTHO05D005973 1.3e-26 122.9 71 74.6
Rhsim01G0191400 Rhododendron simsii HOM05D004447 ORTHO05D005973 1.7e-26 122.5 71 74.6
Cc02_g33870 Coffea canephora HOM05D004447 ORTHO05D005973 2.2e-26 122.1 82 68.3
THA.LOC104799099 Tarenaya hassleriana HOM05D004447 ORTHO05D005973 2.2e-26 122.1 75 74.7
Lsat_1_v5_gn_2_97601 Lactuca sativa HOM05D004447 ORTHO05D005973 3.7e-26 121.3 71 78.9
Hund07518 Selenicereus undatus HOM05D004447 ORTHO05D005973 3.7e-26 121.3 78 70.5
CiPaw.13G161800 Carya illinoinensis HOM05D004447 ORTHO05D005973 6.3e-26 120.6 71 74.6
Hma1.2p1_0571F.1_g180890 Hydrangea macrophylla HOM05D004447 ORTHO05D005973 6.3e-26 120.6 72 76.4
Hma1.2p1_0571F.1_g180900 Hydrangea macrophylla HOM05D004447 ORTHO05D005973 6.3e-26 120.6 72 76.4
Potri.009G054300 Populus trichocarpa HOM05D004447 ORTHO05D005973 6.3e-26 120.6 71 74.6
PGSC0003DMG401012812 Solanum tuberosum HOM05D004447 ORTHO05D005973 6.3e-26 120.6 71 78.9
MELO3C007066.2 Cucumis melo HOM05D004447 ORTHO05D005973 8.3e-26 120.2 71 71.8
Nitab4.5_0000023g0270 Nicotiana tabacum HOM05D004447 ORTHO05D005973 8.3e-26 120.2 70 77.1
RcHm_v2.0_Chr3g0490671 Rosa chinensis HOM05D004447 ORTHO05D005973 8.3e-26 120.2 71 74.6
CsaV3_3G030760 Cucumis sativus L. HOM05D004447 ORTHO05D005973 1.1e-25 119.8 71 71.8
AUR62019289 Chenopodium quinoa HOM05D004447 ORTHO05D005973 1.4e-25 119.4 70 75.7
ClCG08G000100 Citrullus lanatus HOM05D004447 ORTHO05D005973 1.4e-25 119.4 71 71.8
QL01p004967 Quercus lobata HOM05D004447 ORTHO05D005973 1.4e-25 119.4 71 71.8
vmacro12587 Vaccinium macrocarpon HOM05D004447 ORTHO05D005973 1.4e-25 119.4 72 72.2
CSS0002798 Camellia sinensis var. sinensis HOM05D004447 ORTHO05D005973 1.8e-25 119.0 71 74.6
CSS0013975 Camellia sinensis var. sinensis HOM05D004447 ORTHO05D005973 1.8e-25 119.0 71 74.6
Glyma.13G340100 Glycine max HOM05D004447 ORTHO05D005973 1.8e-25 119.0 71 70.4
Nitab4.5_0005731g0030 Nicotiana tabacum HOM05D004447 ORTHO05D005973 1.8e-25 119.0 70 77.1
Solyc03g006420.4 Solanum lycopersicum HOM05D004447 ORTHO05D005973 1.8e-25 119.0 71 76.1
Sopen03g002430 Solanum pennellii HOM05D004447 ORTHO05D005973 1.8e-25 119.0 71 76.1
vmacro17434 Vaccinium macrocarpon HOM05D004447 ORTHO05D005973 1.8e-25 119.0 71 73.2
CsaV3_6G052450 Cucumis sativus L. HOM05D004447 ORTHO05D005973 2.4e-25 118.6 71 73.2
Glyma.15G034300 Glycine max HOM05D004447 ORTHO05D005973 2.4e-25 118.6 71 71.8
TWI32G0348 Tripterygium wilfordii HOM05D004447 ORTHO05D005973 2.4e-25 118.6 71 71.8
CAN.G289.50 Capsicum annuum HOM05D004447 ORTHO05D005973 3.1e-25 118.2 71 74.6
AUR62000111 Chenopodium quinoa HOM05D004447 ORTHO05D005973 3.1e-25 118.2 71 76.1
Ciclev10014192m.g Citrus clementina HOM05D004447 ORTHO05D005973 3.1e-25 118.2 73 69.9
FAN03G1122 Fragaria x ananassa HOM05D004447 ORTHO05D005973 3.1e-25 118.2 71 71.8
Manes.14G002000 Manihot esculenta HOM05D004447 ORTHO05D005973 3.1e-25 118.2 71 74.6
Prupe.4G246200 Prunus persica HOM05D004447 ORTHO05D005973 3.1e-25 118.2 71 71.8
Sed0019583 Sechium edule HOM05D004447 ORTHO05D005973 3.1e-25 118.2 70 74.3
Sc16g0011520 Simmondsia chinensis HOM05D004447 ORTHO05D005973 3.1e-25 118.2 71 71.8
GSVIVG01025279001 Vitis vinifera HOM05D004447 ORTHO05D005973 3.1e-25 118.2 73 74.0
Actinidia06336 Actinidia chinensis HOM05D004447 ORTHO05D005973 4.1e-25 117.9 71 73.2
Actinidia26436 Actinidia chinensis HOM05D004447 ORTHO05D005973 4.1e-25 117.9 71 73.2
COL.COLO4_24890 Corchorus olitorius HOM05D004447 ORTHO05D005973 4.1e-25 117.9 71 73.2
PSO455G0096 Papaver somniferum HOM05D004447 ORTHO05D005973 4.1e-25 117.9 71 73.2
Thecc.09G232100 Theobroma cacao HOM05D004447 ORTHO05D005973 4.1e-25 117.9 71 73.2
Eucgr.J00777 Eucalyptus grandis HOM05D004447 ORTHO05D005973 5.3e-25 117.5 71 73.2
FAN01G0266 Fragaria x ananassa HOM05D004447 ORTHO05D005973 5.3e-25 117.5 71 71.8
Prupe.5G048200 Prunus persica HOM05D004447 ORTHO05D005973 5.3e-25 117.5 71 73.2
FvH4_7g17041 Fragaria vesca HOM05D004447 ORTHO05D005973 7.0e-25 117.1 71 71.8
HanXRQChr07g0197501 Helianthus annuus HOM05D004447 ORTHO05D005973 7.0e-25 117.1 71 71.8
Phvul.L009243 Phaseolus vulgaris HOM05D004447 ORTHO05D005973 7.0e-25 117.1 71 70.4
EL10Ac4g10265 Beta vulgaris HOM05D004447 ORTHO05D005973 9.1e-25 116.7 70 74.3
EL10Ac4g10281 Beta vulgaris HOM05D004447 ORTHO05D005973 9.1e-25 116.7 70 74.3
Peaxi162Scf00862g00001 Petunia axillaris HOM05D004447 ORTHO05D005973 9.1e-25 116.7 71 73.2
Cfa009762 Carpinus fangiana HOM05D004447 ORTHO05D005973 1.2e-24 116.3 71 70.4
Thhalv10029404m.g Eutrema salsugineum HOM05D004447 ORTHO05D005973 1.2e-24 116.3 72 70.8
Nn8g41218 Nelumbo nucifera HOM05D004447 ORTHO05D005973 1.2e-24 116.3 75 69.3
CANSAT54G1530 Cannabis sativa HOM05D004447 ORTHO05D005973 1.6e-24 115.9 71 73.2
Gohir.A08G013660 Gossypium hirsutum HOM05D004447 ORTHO05D005973 2.7e-24 115.2 71 70.4
Gohir.D08G024200 Gossypium hirsutum HOM05D004447 ORTHO05D005973 2.7e-24 115.2 71 70.4
Gorai.004G019600 Gossypium raimondii HOM05D004447 ORTHO05D005973 2.7e-24 115.2 71 70.4
Atru.chr3.2739 Acer truncatum HOM05D004447 ORTHO05D005973 3.5e-24 114.8 71 71.8
ATR0605G286 Amborella trichopoda HOM05D004447 ORTHO05D005973 3.5e-24 114.8 71 71.8
Duzib170G0888 Durio zibethinus HOM05D004447 ORTHO05D005973 3.5e-24 114.8 71 71.8
FAN06G1152 Fragaria x ananassa HOM05D004447 ORTHO05D005973 3.5e-24 114.8 81 64.2
Haze_23126 Corylus avellana HOM05D004447 ORTHO05D005973 4.5e-24 114.4 71 70.4
PSO170G1822 Papaver somniferum HOM05D004447 ORTHO05D005973 4.5e-24 114.4 71 70.4
VMungo1080G0814 Vigna mungo HOM05D004447 ORTHO05D005973 4.5e-24 114.4 71 70.4
Aa31LG9G10020 Aethionema arabicum HOM05D004447 ORTHO05D005973 5.9e-24 114.0 72 70.8
Psat7g024280 Pisum sativum HOM05D004447 ORTHO05D005973 5.9e-24 114.0 71 69.0
PGR119G1865 Punica granatum HOM05D004447 ORTHO05D005973 5.9e-24 114.0 71 71.8
HPP92_009576 Vanilla planifolia HOM05D004447 ORTHO05D005973 5.9e-24 114.0 71 70.4
arahy.Tifrunner.gnm1.ann1.1VP9U3 Arachis hypogaea HOM05D004447 ORTHO05D005973 1.0e-23 113.2 71 67.6
arahy.Tifrunner.gnm1.ann1.M4FG4U Arachis hypogaea HOM05D004447 ORTHO05D005973 1.0e-23 113.2 71 67.6
MBI01_g18890_MAGBIO Magnolia biondii HOM05D004447 ORTHO05D005973 1.0e-23 113.2 71 67.6
PSO302G0234 Papaver somniferum HOM05D004447 ORTHO05D005973 1.0e-23 113.2 71 69.0
Lalb_Chr24g0397081 Lupinus albus HOM05D004447 ORTHO05D005973 1.3e-23 112.8 69 71.0
MSTRG.21381 Avicennia marina HOM05D004447 ORTHO05D005973 1.7e-23 112.5 75 69.3
Sp6g04850 Schrenkiella parvula HOM05D004447 ORTHO05D005973 1.7e-23 112.5 72 69.4
CDE05G2287 Ceratophyllum demersum HOM05D004447 ORTHO05D005973 2.2e-23 112.1 71 70.4
Medtr8g099640 Medicago truncatula HOM05D004447 ORTHO05D005973 2.9e-23 111.7 71 66.2
Oeu043298.1 Olea europaea HOM05D004447 ORTHO05D005973 3.8e-23 111.3 74 64.9
Carub.0006s3195 Capsella rubella HOM05D004447 ORTHO05D005973 8.5e-23 110.2 74 67.6
Migut.D00596 Erythranthe guttata HOM05D004447 ORTHO05D005973 1.1e-22 109.8 71 70.4
AT4G12620 Arabidopsis thaliana HOM05D004447 ORTHO05D005973 1.9e-22 109.0 74 67.6
Ca_17467_v3 Cicer arietinum L. HOM05D004447 ORTHO05D005973 2.5e-22 108.6 71 64.8
ECA238G3100 Erigeron canadensis HOM05D004447 ORTHO05D005973 2.5e-22 108.6 72 72.2
Cpa.g.sc84.65 Carica papaya HOM05D004447 ORTHO05D005973 3.2e-22 108.2 71 69.0
Lj3g0019316 Lotus japonicus HOM05D004447 ORTHO05D005973 3.2e-22 108.2 69 65.2
TPR.G3376 Trifolium pratense HOM05D004447 ORTHO05D005973 4.2e-22 107.8 71 64.8
AL6G47620 Arabidopsis lyrata HOM05D004447 ORTHO05D005973 1.2e-21 106.3 74 67.6
BcaB01g01767 Brassica carinata HOM05D004447 ORTHO05D005973 1.6e-21 105.9 72 66.7
AT4G14700 Arabidopsis thaliana HOM05D004447 ORTHO05D005973 2.1e-21 105.5 73 65.8
Zm00001eb374440 Zea mays HOM05D004447 ORTHO05D005973 3.6e-21 104.8 71 62.0
Zm00001eb278360 Zea mays HOM05D004447 ORTHO05D005973 4.7e-21 104.4 71 62.0
SHI27486 Sapria himalayana HOM05D004447 ORTHO05D005973 8.0e-21 103.6 71 63.4
SGA_v2.0_scaffold247G44874 Striga asiatica HOM05D004447 ORTHO05D005973 1.0e-20 103.2 71 64.8
A09p26680 Brassica napus HOM05D004447 ORTHO05D005973 2.3e-20 102.1 70 67.1
BraA09t38238Z Brassica rapa HOM05D004447 ORTHO05D005973 5.2e-20 100.9 70 65.7
CARHR253540 Cardamine hirsuta HOM05D004447 ORTHO05D005973 8.8e-20 100.1 76 61.8
BcaC04g21255 Brassica carinata HOM05D004447 ORTHO05D005973 1.5e-19 99.4 70 65.7
C09p33790 Brassica napus HOM05D004447 ORTHO05D005973 1.5e-19 99.4 70 65.7
BolC9t56215H Brassica oleracea HOM05D004447 ORTHO05D005973 1.5e-19 99.4 70 65.7
AL7G41290 Arabidopsis lyrata HOM05D004447 ORTHO05D005973 9.8e-19 96.7 75 61.3
GSVIVG01025457001 Vitis vinifera HOM05D004447 ORTHO05D005973 4.1e-17 91.3 58 74.1
Ciclev10005880m.g Citrus clementina HOM05D004447 ORTHO05D005973 2.7e-16 88.6 86 50.0
AagrBONN_evm.TU.Sc2ySwM_362.493 Anthoceros agrestis HOM05D004447 ORTHO05D005973 1.7e-15 85.9 77 44.2
AagrBONN_evm.TU.Sc2ySwM_368.1065 Anthoceros agrestis HOM05D004447 ORTHO05D005973 6.6e-15 84.0 70 51.4
Pp3c9_1080 Physcomitrium patens HOM05D004447 ORTHO05D005973 1.9e-14 82.4 69 49.3
SMO145G0037 Selaginella moellendorffii HOM05D004447 ORTHO05D005973 3.3e-14 81.6 71 53.5
Mapoly0041s0101 Marchantia polymorpha HOM05D004447 ORTHO05D005973 4.7e-13 77.8 77 44.2
MD11G1197400 Malus domestica HOM05D004447 ORTHO05D005973 7.5e-11 70.5 70 51.4
CBR_g41485 Chara braunii HOM05D004447 ORTHO05D005973 4.9e-10 67.8 87 39.1
Nn2g15474 Nelumbo nucifera HOM05D004447 ORTHO05D005973 1.6e-08 62.8 32 78.1
Cre10.g455600 Chlamydomonas reinhardtii HOM05D004447 ORTHO05D005973 2.9e-07 58.5 37 56.8
MCO08G197 Micromonas commoda HOM05D004447 ORTHO05D005973 3.9e-07 58.2 52 44.2
PRCOL_00004147 Prasinoderma coloniale HOM05D004447 ORTHO05D005973 1.1e-06 56.6 30 66.7
AagrBONN_evm.TU.Sc2ySwM_340.916 Anthoceros agrestis HOM05D000465 ORTHO05D000301 4.3e-06 54.7 36 58.3
CBR_g29301 Chara braunii HOM05D000019 ORTHO05D000048 4.3e-06 54.7 32 59.4
Haze_26150 Corylus avellana HOM05D000104 ORTHO05D003467 4.3e-06 54.7 43 48.8
Eucgr.C02221 Eucalyptus grandis HOM05D003999 ORTHO05D005219 4.3e-06 54.7 57 47.4
SEGI_27514 Sequoiadendron giganteum HOM05D000104 ORTHO05D003467 5.6e-06 54.3 30 60.0
AagrBONN_evm.TU.Sc2ySwM_117.2377 Anthoceros agrestis HOM05D001972 ORTHO05D002555 7.3e-06 53.9 35 57.1
Sabra15G0007600 Salix brachista HOM05D002415 ORTHO05D002522 7.3e-06 53.9 58 37.9
MCO05G172 Micromonas commoda HOM05D006022 ORTHO05D007649 9.5e-06 53.5 44 45.5


User provided reference genes

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