Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6C358T14 Lonicera japonica HOM05D004739 ORTHO05D005784 0.0e+00 1788.9 887 100.0
Lj6A353T83 Lonicera japonica HOM05D004739 ORTHO05D005784 0.0e+00 1659.4 974 86.8
GSVIVG01031656001 Vitis vinifera HOM05D004739 ORTHO05D005784 0.0e+00 1112.1 955 61.4
vmacro15619 Vaccinium macrocarpon HOM05D004739 ORTHO05D005784 0.0e+00 1093.6 1066 56.2
Duzib212G0770 Durio zibethinus HOM05D004739 ORTHO05D005784 0.0e+00 1092.0 955 60.1
TAR365G0018 Trochodendron aralioides HOM05D004739 ORTHO05D005784 0.0e+00 1090.5 969 59.2
Actinidia38940 Actinidia chinensis HOM05D004739 ORTHO05D005784 0.0e+00 1081.6 920 62.7
HanXRQChr07g0204631 Helianthus annuus HOM05D004739 ORTHO05D005784 0.0e+00 1077.0 931 61.8
Thecc.04G186700 Theobroma cacao HOM05D004739 ORTHO05D005784 0.0e+00 1077.0 894 61.4
CSS0046373 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 2.4e-311 1072.0 963 59.3
COL.COLO4_08079 Corchorus olitorius HOM05D004739 ORTHO05D005784 6.0e-310 1067.4 1002 56.4
Hma1.2p1_1286F.1_g273220 Hydrangea macrophylla HOM05D004739 ORTHO05D005784 2.1e-307 1058.9 701 74.2
Gorai.005G127900 Gossypium raimondii HOM05D004739 ORTHO05D005784 2.6e-305 1052.0 963 58.6
ECA248G0146 Erigeron canadensis HOM05D004739 ORTHO05D005784 1.9e-303 1045.8 955 58.4
DCAR_023801 Daucus carota HOM05D004739 ORTHO05D005784 6.6e-301 1037.3 938 58.6
Potri.002G233800 Populus trichocarpa HOM05D004739 ORTHO05D005784 5.6e-300 1034.2 976 57.6
QL06p027729 Quercus lobata HOM05D004739 ORTHO05D005784 2.4e-298 1028.9 981 56.8
TWI73G0948 Tripterygium wilfordii HOM05D004739 ORTHO05D005784 2.4e-298 1028.9 918 57.7
RcHm_v2.0_Chr4g0410481 Rosa chinensis HOM05D004739 ORTHO05D005784 7.6e-297 1023.8 894 61.1
Lsat_1_v5_gn_1_69581 Lactuca sativa HOM05D004739 ORTHO05D005784 1.1e-295 1020.0 946 58.6
Manes.05G194701 Manihot esculenta HOM05D004739 ORTHO05D005784 3.5e-294 1015.0 959 56.5
Gohir.D02G113000 Gossypium hirsutum HOM05D004739 ORTHO05D005784 7.9e-294 1013.8 938 58.4
Sabra02G0178500 Salix brachista HOM05D004739 ORTHO05D005784 5.1e-293 1011.1 959 56.7
FvH4_4g12370 Fragaria vesca HOM05D004739 ORTHO05D005784 4.3e-292 1008.1 937 57.7
Aqoxy2G04008 Aquilegia oxysepala HOM05D004739 ORTHO05D005784 1.6e-291 1006.1 951 56.7
FAN12G0062 Fragaria x ananassa HOM05D004739 ORTHO05D005784 6.9e-290 1000.7 907 59.0
Ciclev10004261m.g Citrus clementina HOM05D004739 ORTHO05D005784 1.5e-289 999.6 952 57.1
FAN07G0434 Fragaria x ananassa HOM05D004739 ORTHO05D005784 2.9e-288 995.3 907 58.9
FAN12G0551 Fragaria x ananassa HOM05D004739 ORTHO05D005784 4.2e-287 991.5 937 57.2
Eucgr.H00464 Eucalyptus grandis HOM05D004739 ORTHO05D005784 4.6e-286 988.0 967 55.1
Cc03_g10760 Coffea canephora HOM05D004739 ORTHO05D005784 2.5e-284 982.2 714 68.9
Sopen09g036290 Solanum pennellii HOM05D004739 ORTHO05D005784 7.4e-284 980.7 996 53.7
CANSAT78G1796 Cannabis sativa HOM05D004739 ORTHO05D005784 9.6e-284 980.3 957 55.7
Solyc09g098370.4 Solanum lycopersicum HOM05D004739 ORTHO05D005784 6.2e-283 977.6 996 53.6
MELO3C022216.2 Cucumis melo HOM05D004739 ORTHO05D005784 4.9e-280 968.0 945 53.8
CsaV3_5G040440 Cucumis sativus L. HOM05D004739 ORTHO05D005784 5.5e-279 964.5 945 54.2
SalBow3G0652 Salvia bowleyana HOM05D004739 ORTHO05D005784 9.3e-279 963.8 953 56.6
PSO017G5363 Papaver somniferum HOM05D004739 ORTHO05D005784 2.1e-278 962.6 973 53.6
Sc13g0008930 Simmondsia chinensis HOM05D004739 ORTHO05D005784 7.9e-278 960.7 924 55.8
Migut.N00187 Erythranthe guttata HOM05D004739 ORTHO05D005784 8.7e-277 957.2 883 58.0
Peaxi162Scf00286g00338 Petunia axillaris HOM05D004739 ORTHO05D005784 9.7e-276 953.7 939 55.1
MSTRG.24599 Avicennia marina HOM05D004739 ORTHO05D005784 8.2e-275 950.7 959 55.3
Sed0003398 Sechium edule HOM05D004739 ORTHO05D005784 1.4e-274 949.9 908 55.7
Nitab4.5_0007057g0010 Nicotiana tabacum HOM05D004739 ORTHO05D005784 2.0e-273 946.0 1007 52.3
PSO675G2609 Papaver somniferum HOM05D004739 ORTHO05D005784 7.7e-273 944.1 984 52.4
arahy.Tifrunner.gnm1.ann1.F9LJYJ Arachis hypogaea HOM05D004739 ORTHO05D005784 3.8e-272 941.8 920 55.0
Ah.07g206800 Amaranthus hybridus HOM05D004739 ORTHO05D005784 8.5e-272 940.6 972 53.0
Hund11729 Selenicereus undatus HOM05D004739 ORTHO05D005784 3.2e-271 938.7 931 54.4
Lalb_Chr10g0092061 Lupinus albus HOM05D004739 ORTHO05D005784 3.9e-269 931.8 946 53.6
AUR62021147 Chenopodium quinoa HOM05D004739 ORTHO05D005784 3.3e-268 928.7 899 54.2
Lj1g0022138 Lotus japonicus HOM05D004739 ORTHO05D005784 1.6e-262 909.8 954 52.9
FAN22G0233 Fragaria x ananassa HOM05D004739 ORTHO05D005784 4.7e-262 908.3 922 56.1
ClCG08G000320 Citrullus lanatus HOM05D004739 ORTHO05D005784 1.4e-261 906.7 688 65.0
ATR1145G086 Amborella trichopoda HOM05D004739 ORTHO05D005784 3.9e-261 905.2 903 52.5
Oeu006039.1 Olea europaea HOM05D004739 ORTHO05D005784 3.9e-261 905.2 914 54.9
Psat3g188160 Pisum sativum HOM05D004739 ORTHO05D005784 5.7e-260 901.4 867 55.5
Phvul.008G017600 Phaseolus vulgaris HOM05D004739 ORTHO05D005784 7.4e-260 901.0 867 56.2
Medtr7g022220 Medicago truncatula HOM05D004739 ORTHO05D005784 1.3e-259 900.2 892 54.0
arahy.Tifrunner.gnm1.ann1.WHDV72 Arachis hypogaea HOM05D004739 ORTHO05D005784 2.2e-259 899.4 920 53.4
THA.LOC104805833 Tarenaya hassleriana HOM05D004739 ORTHO05D005784 2.2e-259 899.4 931 52.3
Rhsim02G0071300 Rhododendron simsii HOM05D004739 ORTHO05D005784 2.9e-256 889.0 914 53.9
Glyma.18G283900 Glycine max HOM05D004739 ORTHO05D005784 6.5e-256 887.9 936 53.4
AUR62031390 Chenopodium quinoa HOM05D004739 ORTHO05D005784 8.5e-256 887.5 900 52.3
Nitab4.5_0008073g0020 Nicotiana tabacum HOM05D004739 ORTHO05D005784 1.9e-255 886.3 992 51.3
PGR142G4233 Punica granatum HOM05D004739 ORTHO05D005784 3.7e-251 872.1 940 51.7
SGA_v2.0_scaffold550G52871 Striga asiatica HOM05D004739 ORTHO05D005784 6.3e-251 871.3 979 51.8
AL1G54960 Arabidopsis lyrata HOM05D004739 ORTHO05D005784 6.8e-245 851.3 830 55.7
Aa31LG10G5400 Aethionema arabicum HOM05D004739 ORTHO05D005784 8.8e-245 850.9 914 51.4
HPP92_024268 Vanilla planifolia HOM05D004739 ORTHO05D005784 1.2e-244 850.5 943 49.1
Sp1g35310 Schrenkiella parvula HOM05D004739 ORTHO05D005784 2.2e-243 846.3 919 51.4
Carub.0001s3748 Capsella rubella HOM05D004739 ORTHO05D005784 8.3e-243 844.3 831 55.5
VMungo1383G1195 Vigna mungo HOM05D004739 ORTHO05D005784 1.1e-242 844.0 870 52.6
Thhalv10011221m.g Eutrema salsugineum HOM05D004739 ORTHO05D005784 1.6e-241 840.1 936 51.4
EL10Ac3g05589 Beta vulgaris HOM05D004739 ORTHO05D005784 2.9e-240 835.9 895 52.3
Hma1.2p1_1286F.1_g273230 Hydrangea macrophylla HOM05D004739 ORTHO05D005784 3.8e-240 835.5 530 77.2
C08p05140 Brassica napus HOM05D004739 ORTHO05D005784 6.5e-240 834.7 915 51.0
BolC8t47324H Brassica oleracea HOM05D004739 ORTHO05D005784 6.5e-240 834.7 915 51.4
A08p04770 Brassica napus HOM05D004739 ORTHO05D005784 2.5e-239 832.8 901 51.6
Cpa.g.sc8.308 Carica papaya HOM05D004739 ORTHO05D005784 4.2e-239 832.0 971 48.8
BcaC07g37141 Brassica carinata HOM05D004739 ORTHO05D005784 5.5e-239 831.6 930 50.4
Os06g0171800 Oryza sativa ssp. japonica HOM05D004739 ORTHO05D005784 1.8e-237 826.6 963 47.8
CiPaw.01G109700 Carya illinoinensis HOM05D004739 ORTHO05D005784 7.5e-236 821.2 745 59.2
Zm00001eb375390 Zea mays HOM05D004739 ORTHO05D005784 6.3e-235 818.1 933 48.1
BraA08t32506Z Brassica rapa HOM05D004739 ORTHO05D005784 7.7e-233 811.2 755 55.5
CAN.G710.49 Capsicum annuum HOM05D004739 ORTHO05D005784 2.4e-226 789.6 559 69.1
HPP92_024254 Vanilla planifolia HOM05D004739 ORTHO05D005784 2.4e-226 789.6 943 45.9
Ca_07125_v3 Cicer arietinum L. HOM05D004739 ORTHO05D005784 4.7e-222 775.4 703 57.2
MBI11_g12232_MAGBIO Magnolia biondii HOM05D004739 ORTHO05D005784 3.1e-221 772.7 574 67.4
Atru.BG.162.p Acer truncatum HOM05D004739 ORTHO05D005784 3.9e-208 729.2 461 76.4
CDE02G3320 Ceratophyllum demersum HOM05D004739 ORTHO05D005784 3.2e-194 682.9 953 43.0
MD09G1250400 Malus domestica HOM05D004739 ORTHO05D005784 1.6e-193 680.6 484 71.1
BcaB04g17436 Brassica carinata HOM05D004739 ORTHO05D005784 4.6e-193 679.1 705 51.2
Prupe.1G176700 Prunus persica HOM05D004739 ORTHO05D005784 2.0e-188 663.7 727 52.1
Gohir.A03G095900 Gossypium hirsutum HOM05D004739 ORTHO05D005784 5.4e-186 655.6 732 51.8
AT1G48360 Arabidopsis thaliana HOM05D004739 ORTHO05D005784 2.7e-177 626.7 764 48.8
AagrBONN_evm.TU.Sc2ySwM_344.4128 Anthoceros agrestis HOM05D004739 ORTHO05D002352 1.1e-175 621.3 960 38.6
Pp3c5_2670 Physcomitrium patens HOM05D004739 ORTHO05D005784 4.3e-175 619.4 819 42.5
SMO203G0018 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.6e-174 617.5 914 41.4
Mapoly0005s0042 Marchantia polymorpha HOM05D004739 ORTHO05D005784 2.5e-170 603.6 766 42.2
SEGI_11980 Sequoiadendron giganteum HOM05D004739 ORTHO05D005784 1.8e-168 597.4 606 51.2
SMO331G0089 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 4.5e-156 556.2 723 44.0
Dinv31047 Davidia involucrata HOM05D004739 ORTHO05D005784 1.0e-155 555.1 447 65.3
Dinv31053 Davidia involucrata HOM05D004739 ORTHO05D005784 1.0e-155 555.1 447 65.3
SMO327G0027 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 2.0e-151 540.8 842 40.0
unitig_8.g4743 Utricularia gibba HOM05D004739 ORTHO05D003440 7.4e-151 538.9 944 37.5
SMO327G0004 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 5.0e-139 499.6 726 41.6
SMO331G0087 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.8e-136 491.1 481 51.1
SMO110G0012 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 2.4e-133 480.7 911 35.6
MD00G1163900 Malus domestica HOM05D004739 ORTHO05D005784 5.3e-133 479.6 279 81.0
TPR.G22177 Trifolium pratense HOM05D004739 ORTHO05D005784 5.9e-132 476.1 314 73.6
SMO327G0008 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.5e-122 444.9 699 40.6
Glyma.08G259832 Glycine max HOM05D004739 ORTHO05D005784 4.1e-117 426.8 367 61.9
SMO110G0011 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 5.0e-115 419.9 605 42.8
Dinv31052 Davidia involucrata HOM05D004739 ORTHO05D005784 1.5e-114 418.3 476 52.3
CSS0028447 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 2.9e-110 404.1 316 67.7
CARHR037970 Cardamine hirsuta HOM05D004739 ORTHO05D005784 3.1e-96 357.5 503 43.7
SMO331G0064 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 5.2e-96 356.7 837 33.8
SMO252G0014 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.5e-90 338.6 734 32.7
SMO110G0002 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 6.8e-88 329.7 723 34.3
TAR365G0620 Trochodendron aralioides HOM05D004739 ORTHO05D005784 1.6e-81 308.5 437 43.0
Cre16.g660350 Chlamydomonas reinhardtii HOM05D004739 ORTHO05D005784 5.2e-80 303.5 405 41.2
PRCOL_00003987 Prasinoderma coloniale HOM05D004739 ORTHO05D005784 1.2e-76 292.4 650 31.1
SHI06489 Sapria himalayana HOM05D004739 ORTHO05D000023 6.6e-75 286.6 411 42.3
PGSC0003DMG400021624 Solanum tuberosum HOM05D004739 ORTHO05D005784 1.3e-73 282.3 164 75.6
CBR_g39432 Chara braunii HOM05D004739 ORTHO05D005784 4.9e-70 270.4 270 50.4
TPR.G2930 Trifolium pratense HOM05D004739 ORTHO05D005784 5.3e-64 250.4 368 41.3
Haze_11712 Corylus avellana HOM05D004739 ORTHO05D005784 1.6e-60 238.8 141 78.0
MD09G1250200 Malus domestica HOM05D004739 ORTHO05D005784 1.5e-55 222.2 388 38.4
SMO252G0017 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 2.2e-54 218.4 191 52.9
Lj6A353T82 Lonicera japonica HOM05D004739 ORTHO05D005784 2.3e-51 208.4 107 94.4
Cfa022531 Carpinus fangiana HOM05D004739 ORTHO05D121730 5.1e-51 207.2 727 27.9
CAN.G710.48 Capsicum annuum HOM05D003943 ORTHO05D004753 2.1e-49 201.8 377 35.5
FAN17G2248 Fragaria x ananassa HOM05D004739 ORTHO05D005784 3.7e-49 201.1 165 64.8
TPR.G2943 Trifolium pratense HOM05D004739 ORTHO05D005784 7.6e-47 193.4 206 52.4
CSS0043638 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 3.8e-46 191.0 154 65.6
MCO01G753 Micromonas commoda HOM05D004739 ORTHO05D005784 3.8e-46 191.0 343 34.1
SMO331G0063 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 5.5e-45 187.2 159 52.8
Cfa015247 Carpinus fangiana HOM05D004739 ORTHO05D005784 9.3e-45 186.4 146 69.2
Actinidia34750 Actinidia chinensis HOM05D004739 ORTHO05D005784 8.7e-43 179.9 111 81.1
Lj6P350T22 Lonicera japonica HOM05D004739 ORTHO05D005784 9.4e-37 159.8 131 66.4
SEGI_19061 Sequoiadendron giganteum HOM05D004739 ORTHO05D005784 1.1e-32 146.4 460 26.3
CBR_g7993 Chara braunii HOM05D004739 ORTHO05D005784 1.4e-32 146.0 273 32.2
CSS0002286 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 1.4e-27 129.4 83 80.7
Zm00001eb188740 Zea mays HOM05D004739 ORTHO05D005784 5.7e-26 124.0 84 70.2
Zm00001eb188730 Zea mays HOM05D004739 ORTHO05D005784 1.7e-25 122.5 86 65.1
Glyma.16G127800 Glycine max HOM05D004739 ORTHO05D005784 8.2e-25 120.2 89 65.2
SMO331G0066 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 5.9e-23 114.0 618 24.8
CAN.G1076.10 Capsicum annuum HOM05D004739 ORTHO05D005784 1.5e-18 99.4 78 57.7
Glyma.08G259766 Glycine max HOM05D004739 ORTHO05D005784 2.2e-17 95.5 107 43.9
Lj6P352T60 Lonicera japonica HOM05D004739 ORTHO05D005784 1.4e-16 92.8 77 62.3
ClCG08G000310 Citrullus lanatus HOM05D004739 ORTHO05D005784 1.1e-13 83.2 162 36.4
Dinv31046 Davidia involucrata HOM05D050287 ORTHO05D005784 3.2e-13 81.6 59 67.8
Dinv31054 Davidia involucrata HOM05D050287 ORTHO05D005784 3.2e-13 81.6 59 67.8
BolC1t05400H Brassica oleracea HOM05D000493 ORTHO05D001355 4.7e-12 77.8 64 56.2
CSS0015609 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 8.8e-11 73.6 124 37.9
SMO110G0004 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 2.8e-09 68.6 71 47.9


User provided reference genes

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