Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6A805G39 Lonicera japonica HOM05D004873 ORTHO05D006122 0.0e+00 1490.3 992 100.0
Dinv24864 Davidia involucrata HOM05D004873 ORTHO05D006122 5.1e-201 705.7 806 63.6
Oeu055452.2 Olea europaea HOM05D004873 ORTHO05D006122 1.0e-193 681.4 1035 51.9
CSS0025142 Camellia sinensis var. sinensis HOM05D004873 ORTHO05D006122 8.8e-193 678.3 1052 55.0
Dinv15307 Davidia involucrata HOM05D004873 ORTHO05D006122 8.8e-193 678.3 780 68.6
Hma1.2p1_0160F.1_g070740 Hydrangea macrophylla HOM05D004873 ORTHO05D006122 6.9e-190 668.7 805 58.6
Nn4g22808 Nelumbo nucifera HOM05D004873 ORTHO05D006122 1.4e-185 654.4 1058 55.3
TAR622G0484 Trochodendron aralioides HOM05D004873 ORTHO05D006122 2.8e-183 646.7 990 56.2
Actinidia01706 Actinidia chinensis HOM05D004873 ORTHO05D006122 4.5e-181 639.4 1001 55.3
Atru.chr11.2013 Acer truncatum HOM05D004873 ORTHO05D006122 7.7e-181 638.6 1042 50.2
Cfa009139 Carpinus fangiana HOM05D004873 ORTHO05D006122 2.2e-180 637.1 990 55.7
Hma1.2p1_0867F.1_g230230 Hydrangea macrophylla HOM05D004873 ORTHO05D006122 6.5e-180 635.6 821 60.4
CiPaw.05G150500 Carya illinoinensis HOM05D004873 ORTHO05D006122 7.2e-179 632.1 935 54.3
GSVIVG01020233001 Vitis vinifera HOM05D004873 ORTHO05D006122 9.4e-179 631.7 894 55.1
Manes.13G031000 Manihot esculenta HOM05D004873 ORTHO05D006122 2.1e-178 630.6 787 64.2
ClCG05G025280 Citrullus lanatus HOM05D004873 ORTHO05D006122 1.1e-174 618.2 1099 49.8
SGA_v2.0_scaffold165G38251 Striga asiatica HOM05D004873 ORTHO05D006122 1.4e-174 617.8 965 51.5
Haze_12170 Corylus avellana HOM05D004873 ORTHO05D006122 1.8e-174 617.5 1014 52.2
DCAR_026543 Daucus carota HOM05D004873 ORTHO05D006122 2.4e-174 617.1 1050 47.3
Peaxi162Scf00338g00218 Petunia axillaris HOM05D004873 ORTHO05D006122 1.3e-172 611.3 992 52.7
TAR374G0217 Trochodendron aralioides HOM05D004873 ORTHO05D006122 8.8e-169 598.6 1065 52.3
Potri.008G147100 Populus trichocarpa HOM05D004873 ORTHO05D006122 2.0e-168 597.4 817 54.2
PGSC0003DMG400030977 Solanum tuberosum HOM05D004873 ORTHO05D006122 3.4e-168 596.7 986 50.2
ECA199G0004 Erigeron canadensis HOM05D004873 ORTHO05D006122 2.8e-167 593.6 1042 52.6
COL.COLO4_36971 Corchorus olitorius HOM05D004873 ORTHO05D006122 4.1e-166 589.7 898 47.0
vmacro01183 Vaccinium macrocarpon HOM05D004873 ORTHO05D006122 9.1e-166 588.6 989 54.8
MBI15_g36943_MAGBIO Magnolia biondii HOM05D004873 ORTHO05D006122 1.6e-165 587.8 977 52.3
Duzib251G0436 Durio zibethinus HOM05D004873 ORTHO05D006122 2.0e-165 587.4 982 47.7
Sopen05g001620 Solanum pennellii HOM05D004873 ORTHO05D006122 1.0e-164 585.1 985 49.2
Sabra10G0067000 Salix brachista HOM05D004873 ORTHO05D006122 2.9e-164 583.6 949 53.7
DCAR_024143 Daucus carota HOM05D004873 ORTHO05D006122 6.5e-164 582.4 1015 47.0
Nitab4.5_0000113g0270 Nicotiana tabacum HOM05D004873 ORTHO05D006122 2.5e-163 580.5 1004 46.1
RcHm_v2.0_Chr4g0443951 Rosa chinensis HOM05D004873 ORTHO05D006122 1.6e-162 577.8 978 48.6
QL03p061438 Quercus lobata HOM05D004873 ORTHO05D006122 3.6e-162 576.6 792 58.2
Ciclev10030647m.g Citrus clementina HOM05D004873 ORTHO05D006122 6.1e-162 575.9 1042 47.8
MELO3C012001.2 Cucumis melo HOM05D004873 ORTHO05D006122 8.0e-162 575.5 1073 48.4
TWI18G0605 Tripterygium wilfordii HOM05D004873 ORTHO05D006122 1.8e-161 574.3 1045 47.2
Cc11_g14610 Coffea canephora HOM05D004873 ORTHO05D006122 6.8e-161 572.4 999 49.1
Prupe.1G254700 Prunus persica HOM05D004873 ORTHO05D006122 2.6e-160 570.5 784 58.5
Duzib248G0479 Durio zibethinus HOM05D004873 ORTHO05D006122 3.7e-159 566.6 968 47.3
Migut.L01408 Erythranthe guttata HOM05D004873 ORTHO05D006122 6.3e-159 565.8 981 51.0
CAN.G376.10 Capsicum annuum HOM05D004873 ORTHO05D006122 3.1e-158 563.5 911 50.9
Sed0006362 Sechium edule HOM05D004873 ORTHO05D006122 5.9e-157 559.3 802 56.4
Lsat_1_v5_gn_4_6981 Lactuca sativa HOM05D004873 ORTHO05D006122 1.3e-156 558.1 993 49.7
TWI36G0907 Tripterygium wilfordii HOM05D004873 ORTHO05D006122 2.9e-156 557.0 962 50.5
Eucgr.B03347 Eucalyptus grandis HOM05D004873 ORTHO05D006122 6.6e-156 555.8 980 50.4
Rhsim12G0047400 Rhododendron simsii HOM05D004873 ORTHO05D006122 6.6e-156 555.8 1021 50.5
Potri.010G094700 Populus trichocarpa HOM05D004873 ORTHO05D006122 1.1e-155 555.1 981 53.8
Ca_04600_v3 Cicer arietinum L. HOM05D004873 ORTHO05D006122 4.2e-155 553.1 963 48.8
TWI75G0297 Tripterygium wilfordii HOM05D004873 ORTHO05D006122 4.2e-155 553.1 1042 49.3
FAN22G1569 Fragaria x ananassa HOM05D004873 ORTHO05D006122 7.2e-155 552.4 1003 47.2
Aqoxy3G02990_Aqoxy3G02991 Aquilegia oxysepala HOM05D004873 ORTHO05D006122 2.1e-154 550.8 999 50.8
Gohir.D02G163000 Gossypium hirsutum HOM05D004873 ORTHO05D006122 1.0e-153 548.5 790 53.3
TPR.G13590 Trifolium pratense HOM05D004873 ORTHO05D006122 8.9e-153 545.4 965 48.3
Gorai.005G183000 Gossypium raimondii HOM05D004873 ORTHO05D006122 5.7e-152 542.7 789 52.9
arahy.Tifrunner.gnm1.ann1.SJZ9IC Arachis hypogaea HOM05D004873 ORTHO05D006122 2.9e-151 540.4 1000 50.9
Medtr5g034430 Medicago truncatula HOM05D004873 ORTHO05D006122 4.1e-150 536.6 992 48.5
CsaV3_5G031610 Cucumis sativus L. HOM05D004873 ORTHO05D006122 5.4e-150 536.2 786 56.2
FvH4_4g34571 Fragaria vesca HOM05D004873 ORTHO05D006122 7.0e-150 535.8 1005 46.5
FAN07G2437 Fragaria x ananassa HOM05D004873 ORTHO05D006122 1.6e-149 534.6 794 53.0
CANSAT01G1467 Cannabis sativa HOM05D004873 ORTHO05D006122 3.5e-149 533.5 1006 47.1
HanXRQChr12g0383471 Helianthus annuus HOM05D004873 ORTHO05D006122 5.9e-149 532.7 1048 50.2
FAN12G3868 Fragaria x ananassa HOM05D004873 ORTHO05D006122 2.9e-148 530.4 1034 45.9
MD13G1091200 Malus domestica HOM05D004873 ORTHO05D006122 3.9e-148 530.0 784 56.9
arahy.Tifrunner.gnm1.ann1.QGK7DH Arachis hypogaea HOM05D004873 ORTHO05D006122 8.6e-148 528.9 1018 49.2
PSO063G1237 Papaver somniferum HOM05D004873 ORTHO05D006122 1.9e-147 527.7 788 59.5
MSTRG.7893 Avicennia marina HOM05D004873 ORTHO05D006122 2.8e-146 523.9 773 52.4
AUR62005371 Chenopodium quinoa HOM05D004873 ORTHO05D006122 3.6e-146 523.5 931 46.3
MD16G1091700 Malus domestica HOM05D004873 ORTHO05D006122 4.7e-146 523.1 786 57.4
Lalb_Chr16g0392411 Lupinus albus HOM05D004873 ORTHO05D006122 4.0e-145 520.0 782 52.9
ATR0691G293 Amborella trichopoda HOM05D004873 ORTHO05D006122 6.8e-145 519.2 974 50.8
Phvul.002G071900 Phaseolus vulgaris HOM05D004873 ORTHO05D006122 7.5e-144 515.8 805 54.3
VMungo1215G2983 Vigna mungo HOM05D004873 ORTHO05D006122 9.8e-144 515.4 977 48.8
FAN17G2310 Fragaria x ananassa HOM05D004873 ORTHO05D006122 1.3e-143 515.0 995 45.7
Psat2g106600 Pisum sativum HOM05D004873 ORTHO05D006122 2.7e-141 507.3 786 51.5
Gohir.A03G140300 Gossypium hirsutum HOM05D004873 ORTHO05D006122 1.7e-140 504.6 781 52.2
Glyma.01G031400 Glycine max HOM05D004873 ORTHO05D006122 1.5e-139 501.5 1035 45.6
Lalb_Chr05g0228131 Lupinus albus HOM05D004873 ORTHO05D006122 2.1e-138 497.7 781 57.2
Sc11g0001220 Simmondsia chinensis HOM05D004873 ORTHO05D006122 2.1e-138 497.7 770 54.2
Cpa.g.sc69.19 Carica papaya HOM05D004873 ORTHO05D006122 6.8e-137 492.7 858 47.1
PSO832G2005 Papaver somniferum HOM05D004873 ORTHO05D006122 4.4e-136 490.0 800 55.1
HPP92_019184 Vanilla planifolia HOM05D004873 ORTHO05D006122 4.9e-135 486.5 799 48.8
AUR62014033 Chenopodium quinoa HOM05D004873 ORTHO05D006122 4.1e-134 483.4 946 47.9
Glyma.02G034300 Glycine max HOM05D004873 ORTHO05D006122 1.6e-133 481.5 779 51.9
PGR102G2017 Punica granatum HOM05D004873 ORTHO05D006122 1.6e-130 471.5 950 49.3
Lj2g0008447 Lotus japonicus HOM05D004873 ORTHO05D006122 6.8e-129 466.1 796 50.5
BraA01t02979Z Brassica rapa HOM05D004873 ORTHO05D006122 2.0e-128 464.5 927 46.4
unitig_27.g25195 Utricularia gibba HOM05D004873 ORTHO05D006122 2.6e-128 464.2 972 43.8
BolC1t03651H Brassica oleracea HOM05D004873 ORTHO05D006122 4.4e-128 463.4 931 45.4
A01p29150 Brassica napus HOM05D004873 ORTHO05D006122 1.9e-126 458.0 927 46.2
EL10Ac6g13668 Beta vulgaris HOM05D004873 ORTHO05D006122 5.6e-123 446.4 1000 47.5
Thecc.02G248000 Theobroma cacao HOM05D004873 ORTHO05D006122 7.3e-123 446.0 712 50.7
C01p36930 Brassica napus HOM05D004873 ORTHO05D006122 4.7e-122 443.4 932 43.0
BcaC06g31808 Brassica carinata HOM05D004873 ORTHO05D006122 6.8e-121 439.5 930 45.5
AL2G16455 Arabidopsis lyrata HOM05D004873 ORTHO05D006122 2.0e-120 438.0 988 45.6
Lalb_Chr05g0216921 Lupinus albus HOM05D004873 ORTHO05D006122 2.6e-120 437.6 734 47.4
CARHR052750 Cardamine hirsuta HOM05D004873 ORTHO05D006122 3.2e-118 430.6 794 48.1
BcaC02g10690 Brassica carinata HOM05D004873 ORTHO05D006122 2.1e-117 427.9 999 41.4
Aa31LG2G10110 Aethionema arabicum HOM05D004873 ORTHO05D006122 1.0e-116 425.6 816 48.5
BcaC09g49418 Brassica carinata HOM05D004873 ORTHO05D006122 3.0e-116 424.1 922 43.4
C04p26690 Brassica napus HOM05D004873 ORTHO05D006122 1.1e-115 422.2 913 43.2
BolC4t24137H Brassica oleracea HOM05D004873 ORTHO05D006122 1.1e-115 422.2 913 43.2
THA.LOC104819547 Tarenaya hassleriana HOM05D004873 ORTHO05D006122 3.3e-115 420.6 745 49.9
SEGI_30430 Sequoiadendron giganteum HOM05D004873 ORTHO05D006122 7.3e-115 419.5 1046 44.1
Sp2g04470 Schrenkiella parvula HOM05D004873 ORTHO05D006122 3.1e-113 414.1 1035 44.2
THA.LOC104819514 Tarenaya hassleriana HOM05D004873 ORTHO05D006122 6.9e-113 412.9 1032 42.1
BcaB04g20256 Brassica carinata HOM05D004873 ORTHO05D006122 2.6e-112 411.0 914 45.7
HPP92_019185 Vanilla planifolia HOM05D004873 ORTHO05D006122 4.4e-112 410.2 799 44.7
Carub.0002s0504 Capsella rubella HOM05D004873 ORTHO05D006122 5.8e-112 409.8 934 42.9
Hund05991 Selenicereus undatus HOM05D004873 ORTHO05D006122 1.3e-111 408.7 919 47.6
AT1G60200 Arabidopsis thaliana HOM05D004873 ORTHO05D006122 5.4e-110 403.3 787 50.4
Thhalv10023242m.g Eutrema salsugineum HOM05D004873 ORTHO05D006122 1.6e-109 401.7 939 44.4
TAR629G1177 Trochodendron aralioides HOM05D004873 ORTHO05D006122 1.5e-107 395.2 936 38.1
Zm00001eb042420 Zea mays HOM05D004873 ORTHO05D006122 1.1e-102 379.0 789 44.4
Actinidia08168 Actinidia chinensis HOM05D004873 ORTHO05D006122 2.1e-98 364.8 819 51.6
Oeu056734.1 Olea europaea HOM05D004873 ORTHO05D006122 4.0e-97 360.5 701 45.2
Nitab4.5_0010954g0010 Nicotiana tabacum HOM05D004873 ORTHO05D006122 7.9e-93 346.3 284 67.6
Pp3c25_3310 Physcomitrium patens HOM05D004873 ORTHO05D006122 5.1e-92 343.6 827 44.9
Pp3c16_19090 Physcomitrium patens HOM05D004873 ORTHO05D006122 1.1e-91 342.4 842 45.8
Ah.03g132650 Amaranthus hybridus HOM05D004873 ORTHO05D006122 1.5e-91 342.0 1028 40.3
Mapoly0148s0032 Marchantia polymorpha HOM05D004873 ORTHO05D006122 5.7e-91 340.1 840 45.2
Solyc05g005620.4 Solanum lycopersicum HOM05D004873 ORTHO05D006122 1.9e-86 325.1 293 65.5
Zm00001eb179020 Zea mays HOM05D004873 ORTHO05D006122 4.8e-82 310.5 722 45.0
C05p51270 Brassica napus HOM05D004873 ORTHO05D006122 4.6e-77 293.9 340 52.6
CDE01G0488 Ceratophyllum demersum HOM05D004873 ORTHO05D006122 4.5e-64 250.8 240 58.8
FvH4_4g34570 Fragaria vesca HOM05D004873 ORTHO05D006122 1.3e-58 232.6 251 57.0
FAN12G0889 Fragaria x ananassa HOM05D004873 ORTHO05D006122 6.5e-55 220.3 240 57.1
SMO117G0118 Selaginella moellendorffii HOM05D004873 ORTHO05D006122 6.1e-53 213.8 752 38.4
PSO675G2898 Papaver somniferum HOM05D004873 ORTHO05D006122 1.0e-52 213.0 251 54.6
CDE02G2297 Ceratophyllum demersum HOM05D001801 ORTHO05D001739 2.7e-48 198.4 198 58.6
CDE02G2726 Ceratophyllum demersum HOM05D004873 ORTHO05D006122 1.1e-46 193.0 293 49.1
Os08g0416400 Oryza sativa ssp. japonica HOM05D004873 ORTHO05D006122 3.6e-45 188.0 255 43.1
CBR_g45271 Chara braunii HOM05D000019 ORTHO05D000002 1.2e-43 183.0 288 43.1
CDE01G0278 Ceratophyllum demersum HOM05D004873 ORTHO05D006122 7.3e-38 163.7 474 34.0
SHI27198 Sapria himalayana HOM05D004873 ORTHO05D006122 2.3e-36 158.7 154 61.0
Aqoxy1G03520 Aquilegia oxysepala HOM05D004873 ORTHO05D006122 1.7e-26 125.9 71 84.5
Actinidia27784 Actinidia chinensis HOM05D004873 ORTHO05D026408 2.4e-25 122.1 188 43.6
Medtr5g034435 Medicago truncatula HOM05D004873 ORTHO05D006122 1.7e-23 115.9 72 77.8
MCO16G428 Micromonas commoda HOM05D004873 ORTHO05D006122 8.1e-21 107.1 94 55.3
Lsat_1_v5_gn_5_2020 Lactuca sativa HOM05D004873 ORTHO05D026408 2.6e-19 102.1 160 43.1
Lsat_1_v5_gn_6_33360 Lactuca sativa HOM05D004873 ORTHO05D026408 2.6e-19 102.1 159 43.4
Cre08.g375084 Chlamydomonas reinhardtii HOM05D004873 ORTHO05D006122 1.7e-18 99.4 83 56.6
SMO119G0006 Selaginella moellendorffii HOM05D004873 ORTHO05D006122 3.9e-15 88.2 132 43.9
PRCOL_00005912 Prasinoderma coloniale HOM05D004873 ORTHO05D006122 4.7e-13 81.3 91 44.0
PSO339G1217 Papaver somniferum HOM05D004873 ORTHO05D006122 6.8e-12 77.4 115 39.1
PSO017G6017 Papaver somniferum HOM05D004873 ORTHO05D006122 5.8e-11 74.3 142 31.7
SMO351G0499 Selaginella moellendorffii HOM05D004873 ORTHO05D006122 1.0e-07 63.5 114 41.2


User provided reference genes

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