Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6A27G8 Lonicera japonica HOM05D003955 ORTHO05D004684 0.0e+00 1343.6 696 100.0
Lj2A556T29 Lonicera japonica HOM05D003955 ORTHO05D004684 0.0e+00 1078.2 695 83.2
GSVIVG01008399001 Vitis vinifera HOM05D003955 ORTHO05D004684 4.5e-268 927.9 690 72.2
TAR374G0009 Trochodendron aralioides HOM05D003955 ORTHO05D004684 1.6e-265 919.5 690 71.3
Hma1.2p1_0669F.1_g200270 Hydrangea macrophylla HOM05D003955 ORTHO05D004684 6.0e-265 917.5 703 71.1
HanXRQChr10g0314661 Helianthus annuus HOM05D003955 ORTHO05D004684 3.9e-264 914.8 691 68.5
vmacro16423 Vaccinium macrocarpon HOM05D003955 ORTHO05D004684 6.7e-264 914.1 691 70.8
TAR622G0688 Trochodendron aralioides HOM05D003955 ORTHO05D004684 1.6e-262 909.4 690 68.4
Rhsim12G0139700 Rhododendron simsii HOM05D003955 ORTHO05D004684 2.1e-262 909.1 691 70.8
PSO782G1387 Papaver somniferum HOM05D003955 ORTHO05D004684 3.1e-261 905.2 690 68.6
Solyc03g119090.3 Solanum lycopersicum HOM05D003955 ORTHO05D004684 5.3e-261 904.4 691 68.0
PGSC0003DMG400005655 Solanum tuberosum HOM05D003955 ORTHO05D004684 6.9e-261 904.0 690 68.6
Sopen03g037980 Solanum pennellii HOM05D003955 ORTHO05D004684 9.0e-261 903.7 691 68.0
Nitab4.5_0001158g0090 Nicotiana tabacum HOM05D003955 ORTHO05D004684 4.5e-260 901.4 702 67.7
Migut.D01456 Erythranthe guttata HOM05D003955 ORTHO05D004684 9.9e-260 900.2 690 68.0
Nitab4.5_0001644g0090 Nicotiana tabacum HOM05D003955 ORTHO05D004684 1.7e-259 899.4 714 66.4
PSO063G1948 Papaver somniferum HOM05D003955 ORTHO05D004684 1.7e-259 899.4 690 68.6
Dinv05158 Davidia involucrata HOM05D003955 ORTHO05D004684 2.9e-259 898.7 692 68.1
Peaxi162Scf00683g00157 Petunia axillaris HOM05D003955 ORTHO05D004684 8.4e-259 897.1 690 70.3
Lsat_1_v5_gn_5_91461 Lactuca sativa HOM05D003955 ORTHO05D004684 1.1e-258 896.7 691 67.3
CSS0005322 Camellia sinensis var. sinensis HOM05D003955 ORTHO05D004684 7.1e-258 894.0 690 69.4
MSTRG.9290 Avicennia marina HOM05D003955 ORTHO05D004684 1.2e-257 893.3 689 64.9
Thecc.03G050300 Theobroma cacao HOM05D003955 ORTHO05D004684 1.6e-257 892.9 690 67.2
MD14G1234400 Malus domestica HOM05D003955 ORTHO05D004684 2.7e-257 892.1 694 68.0
MD06G1229500 Malus domestica HOM05D003955 ORTHO05D004684 6.0e-257 891.0 694 68.4
Aqoxy3G04013 Aquilegia oxysepala HOM05D003955 ORTHO05D004684 6.7e-256 887.5 690 69.0
CANSAT80G2537 Cannabis sativa HOM05D003955 ORTHO05D004684 6.7e-256 887.5 691 67.3
Dinv26502 Davidia involucrata HOM05D003955 ORTHO05D004684 1.1e-255 886.7 688 70.9
TWI15G0606 Tripterygium wilfordii HOM05D003955 ORTHO05D004684 1.9e-255 885.9 689 64.6
Prupe.5G230600 Prunus persica HOM05D003955 ORTHO05D004684 9.6e-255 883.6 692 69.2
Cfa019689 Carpinus fangiana HOM05D003955 ORTHO05D004684 1.3e-254 883.2 690 69.6
Gohir.A11G004000 Gossypium hirsutum HOM05D003955 ORTHO05D004684 1.3e-254 883.2 690 67.0
DCAR_014770 Daucus carota HOM05D003955 ORTHO05D004684 2.1e-254 882.5 691 66.3
Gorai.007G004500 Gossypium raimondii HOM05D003955 ORTHO05D004684 3.7e-254 881.7 690 66.4
Gohir.D11G003500 Gossypium hirsutum HOM05D003955 ORTHO05D004684 4.8e-254 881.3 690 66.4
CiPaw.15G139700 Carya illinoinensis HOM05D003955 ORTHO05D004684 6.2e-254 880.9 692 68.9
CsaV3_1G004220 Cucumis sativus L. HOM05D003955 ORTHO05D004684 8.2e-254 880.6 689 65.6
QL10p027883 Quercus lobata HOM05D003955 ORTHO05D004684 8.2e-254 880.6 692 70.1
Sed0001638 Sechium edule HOM05D003955 ORTHO05D004684 1.4e-253 879.8 689 65.6
Cpa.g.sc3.440 Carica papaya HOM05D003955 ORTHO05D004684 3.1e-253 878.6 691 68.6
MELO3C017347.2 Cucumis melo HOM05D003955 ORTHO05D004684 1.2e-252 876.7 689 65.7
Glyma.05G243900 Glycine max HOM05D003955 ORTHO05D004684 1.5e-252 876.3 694 66.4
ClCG06G014440 Citrullus lanatus HOM05D003955 ORTHO05D004684 3.4e-252 875.2 685 65.4
Glyma.08G051900 Glycine max HOM05D003955 ORTHO05D004684 4.5e-252 874.8 694 66.7
RcHm_v2.0_Chr7g0178701 Rosa chinensis HOM05D003955 ORTHO05D004684 5.8e-252 874.4 690 68.8
ECA234G1883 Erigeron canadensis HOM05D003955 ORTHO05D004684 1.3e-251 873.2 676 67.6
Manes.06G008300 Manihot esculenta HOM05D003955 ORTHO05D004684 2.2e-251 872.5 690 68.3
PGR083G2578 Punica granatum HOM05D003955 ORTHO05D004684 2.2e-251 872.5 694 67.0
VMungo0251G3447 Vigna mungo HOM05D003955 ORTHO05D004684 1.1e-250 870.2 694 66.3
Atru.chr11.420 Acer truncatum HOM05D003955 ORTHO05D004684 1.9e-250 869.4 691 65.8
SGA_v2.0_scaffold25G10972 Striga asiatica HOM05D003955 ORTHO05D004684 1.9e-250 869.4 690 65.9
Sed0014282 Sechium edule HOM05D003955 ORTHO05D004684 2.5e-250 869.0 689 64.6
Lalb_Chr05g0221841 Lupinus albus HOM05D003955 ORTHO05D004684 6.0e-249 864.4 694 66.1
Haze_18797 Corylus avellana HOM05D003955 ORTHO05D004684 1.0e-248 863.6 695 68.3
Ciclev10007782m.g Citrus clementina HOM05D003955 ORTHO05D004684 1.8e-248 862.8 690 66.8
DCAR_023230 Daucus carota HOM05D003955 ORTHO05D004684 1.8e-248 862.8 691 64.0
Lj4g0027787 Lotus japonicus HOM05D003955 ORTHO05D004684 2.3e-248 862.4 694 65.0
TWI81G0555 Tripterygium wilfordii HOM05D003955 ORTHO05D004684 3.0e-248 862.1 678 64.2
COL.COLO4_22318 Corchorus olitorius HOM05D003955 ORTHO05D004684 6.7e-248 860.9 711 64.1
Potri.015G041200 Populus trichocarpa HOM05D003955 ORTHO05D004684 1.5e-247 859.8 691 68.0
FAN18G0775 Fragaria x ananassa HOM05D003955 ORTHO05D004684 9.7e-247 857.1 690 67.4
Sabra12G0034600 Salix brachista HOM05D003955 ORTHO05D004684 9.7e-247 857.1 704 65.3
FvH4_5g17110 Fragaria vesca HOM05D003955 ORTHO05D004684 2.8e-246 855.5 690 67.5
Phvul.002G327600 Phaseolus vulgaris HOM05D003955 ORTHO05D004684 6.3e-246 854.4 694 66.6
Potri.012G049200 Populus trichocarpa HOM05D003955 ORTHO05D004684 6.3e-246 854.4 691 68.2
Sc11g0004100 Simmondsia chinensis HOM05D003955 ORTHO05D004684 6.3e-246 854.4 690 65.2
THA.LOC104820357 Tarenaya hassleriana HOM05D003955 ORTHO05D004684 6.3e-246 854.4 690 64.9
Hund24990 Selenicereus undatus HOM05D003955 ORTHO05D004684 1.1e-245 853.6 714 61.2
FAN04G3226 Fragaria x ananassa HOM05D003955 ORTHO05D004684 3.1e-245 852.0 701 66.6
Psat7g000120 Pisum sativum HOM05D003955 ORTHO05D004684 1.5e-244 849.7 690 64.6
FAN08G2535 Fragaria x ananassa HOM05D003955 ORTHO05D004684 2.0e-244 849.4 701 66.6
Manes.15G126700 Manihot esculenta HOM05D003955 ORTHO05D004684 2.6e-244 849.0 690 64.8
Ca_17215_v3 Cicer arietinum L. HOM05D003955 ORTHO05D004684 3.4e-244 848.6 691 65.1
Ca_17217_v3 Cicer arietinum L. HOM05D003955 ORTHO05D004684 3.4e-244 848.6 691 65.1
FAN13G1787 Fragaria x ananassa HOM05D003955 ORTHO05D004684 3.4e-244 848.6 701 66.6
Gorai.002G180400 Gossypium raimondii HOM05D003955 ORTHO05D004684 7.6e-244 847.4 692 60.1
CARHR093380 Cardamine hirsuta HOM05D003955 ORTHO05D004684 5.0e-243 844.7 691 64.7
Oeu061232.2 Olea europaea HOM05D003955 ORTHO05D004684 5.0e-243 844.7 768 59.0
Medtr8g106820 Medicago truncatula HOM05D003955 ORTHO05D004684 6.5e-243 844.3 693 64.8
Aa31LG8G4920 Aethionema arabicum HOM05D003955 ORTHO05D004684 8.5e-243 844.0 691 64.3
COL.COLO4_20464 Corchorus olitorius HOM05D003955 ORTHO05D004684 2.5e-242 842.4 692 61.1
Eucgr.K02263 Eucalyptus grandis HOM05D003955 ORTHO05D004684 5.5e-242 841.3 695 65.2
AUR62014196 Chenopodium quinoa HOM05D003955 ORTHO05D004684 7.2e-242 840.9 691 61.4
Ciclev10014635m.g Citrus clementina HOM05D003955 ORTHO05D004684 1.2e-241 840.1 691 63.7
AUR62041238 Chenopodium quinoa HOM05D003955 ORTHO05D004684 1.6e-241 839.7 691 63.8
Sp3g16180 Schrenkiella parvula HOM05D003955 ORTHO05D004684 3.6e-241 838.6 691 64.4
Thhalv10020321m.g Eutrema salsugineum HOM05D003955 ORTHO05D004684 6.1e-241 837.8 691 64.3
ATR0686G116 Amborella trichopoda HOM05D003955 ORTHO05D004684 3.0e-240 835.5 693 63.3
Glyma.20G126400 Glycine max HOM05D003955 ORTHO05D004684 3.9e-240 835.1 690 62.9
Sabra15G0055900 Salix brachista HOM05D003955 ORTHO05D004684 6.7e-240 834.3 742 63.2
Lj5g0018825 Lotus japonicus HOM05D003955 ORTHO05D004684 5.7e-239 831.2 690 63.2
CDE04G0774 Ceratophyllum demersum HOM05D003955 ORTHO05D004684 9.7e-239 830.5 691 64.7
Carub.0003s1778 Capsella rubella HOM05D003955 ORTHO05D004684 1.3e-238 830.1 691 63.7
unitig_899.g15402 Utricularia gibba HOM05D003955 ORTHO05D004684 1.7e-238 829.7 687 62.4
Sabra15G0063600 Salix brachista HOM05D003955 ORTHO05D004684 3.7e-238 828.6 697 65.9
Medtr1g107560 Medicago truncatula HOM05D003955 ORTHO05D004684 1.8e-237 826.2 687 60.3
BolC5t33552H Brassica oleracea HOM05D003955 ORTHO05D004684 4.1e-237 825.1 691 63.1
Cpa.g.sc211.2 Carica papaya HOM05D003955 ORTHO05D004684 6.9e-237 824.3 691 63.7
C05p48110 Brassica napus HOM05D003955 ORTHO05D004684 1.5e-236 823.2 691 63.1
A05p31710 Brassica napus HOM05D003955 ORTHO05D004684 2.0e-236 822.8 691 63.1
BraA05t22004Z Brassica rapa HOM05D003955 ORTHO05D004684 2.0e-236 822.8 691 63.1
AL3G31220 Arabidopsis lyrata HOM05D003955 ORTHO05D004684 1.3e-235 820.1 691 63.5
VMungo0720G1874 Vigna mungo HOM05D003955 ORTHO05D004684 2.2e-235 819.3 691 62.4
AT3G18060 Arabidopsis thaliana HOM05D003955 ORTHO05D004684 6.5e-235 817.8 691 63.1
arahy.Tifrunner.gnm1.ann1.I5E1T8 Arachis hypogaea HOM05D003955 ORTHO05D004684 1.9e-234 816.2 690 61.6
TPR.G13862 Trifolium pratense HOM05D003955 ORTHO05D004684 4.2e-234 815.1 689 61.5
Nn4g24112 Nelumbo nucifera HOM05D003955 ORTHO05D004684 4.7e-233 811.6 650 67.2
Os01g0125800 Oryza sativa ssp. japonica HOM05D003955 ORTHO05D004684 5.1e-232 808.1 690 59.9
EL10Ac6g14239 Beta vulgaris HOM05D003955 ORTHO05D004684 2.0e-231 806.2 679 61.9
Psat6g220280 Pisum sativum HOM05D003955 ORTHO05D004684 2.0e-231 806.2 689 61.2
arahy.Tifrunner.gnm1.ann1.MW1RK6 Arachis hypogaea HOM05D003955 ORTHO05D004684 5.7e-231 804.7 703 60.3
Phvul.007G038100 Phaseolus vulgaris HOM05D003955 ORTHO05D004684 1.7e-230 803.1 690 61.6
Zm00001eb334960 Zea mays HOM05D003955 ORTHO05D004684 2.4e-229 799.3 693 59.2
Zm00001eb125700 Zea mays HOM05D003955 ORTHO05D004684 7.0e-229 797.7 692 59.2
AL5G10290 Arabidopsis lyrata HOM05D003955 ORTHO05D004684 7.2e-226 787.7 692 60.7
Thhalv10000821m.g Eutrema salsugineum HOM05D003955 ORTHO05D004684 8.0e-225 784.3 692 62.3
Sp2g12780 Schrenkiella parvula HOM05D003955 ORTHO05D004684 1.4e-224 783.5 692 61.4
Ah.03g138590 Amaranthus hybridus HOM05D003955 ORTHO05D004684 1.8e-224 783.1 690 59.3
Carub.0005s0030 Capsella rubella HOM05D003955 ORTHO05D004684 3.0e-224 782.3 692 59.7
BcaC04g21593 Brassica carinata HOM05D003955 ORTHO05D004684 3.9e-224 781.9 692 60.3
Aa31LG2G8590 Aethionema arabicum HOM05D003955 ORTHO05D004684 3.3e-223 778.9 724 57.5
C09p30050 Brassica napus HOM05D003955 ORTHO05D004684 5.7e-223 778.1 697 59.7
BolC9t55869H Brassica oleracea HOM05D003955 ORTHO05D004684 5.7e-223 778.1 697 59.7
CARHR143850 Cardamine hirsuta HOM05D003955 ORTHO05D004684 7.4e-223 777.7 692 60.0
BcaB07g30749 Brassica carinata HOM05D003955 ORTHO05D004684 1.3e-222 776.9 692 60.7
AT2G01330 Arabidopsis thaliana HOM05D003955 ORTHO05D004684 1.7e-222 776.5 692 60.1
A09p23310 Brassica napus HOM05D003955 ORTHO05D004684 1.1e-221 773.9 697 59.4
Actinidia18907 Actinidia chinensis HOM05D003955 ORTHO05D004684 1.8e-221 773.1 693 60.5
BraA09t37932Z Brassica rapa HOM05D003955 ORTHO05D004684 2.4e-221 772.7 697 59.3
THA.LOC104823875 Tarenaya hassleriana HOM05D003955 ORTHO05D004684 1.7e-219 766.5 690 59.7
Gohir.A01G153300 Gossypium hirsutum HOM05D003955 ORTHO05D004684 1.3e-211 740.3 608 62.3
Gohir.D01G099700 Gossypium hirsutum HOM05D003955 ORTHO05D004684 2.2e-211 739.6 608 62.3
Hund20686 Selenicereus undatus HOM05D003955 ORTHO05D004684 1.0e-195 687.6 480 71.0
TPR.G12969 Trifolium pratense HOM05D003955 ORTHO05D004684 3.0e-187 659.4 475 74.3
Pp3c3_9960 Physcomitrium patens HOM05D003955 ORTHO05D004684 1.1e-181 641.0 691 50.4
Mapoly0025s0096 Marchantia polymorpha HOM05D003955 ORTHO05D004684 6.4e-174 615.1 691 46.2
Actinidia35113 Actinidia chinensis HOM05D003955 ORTHO05D004684 1.6e-172 610.5 486 68.5
Cc04_g06570 Coffea canephora HOM05D003955 ORTHO05D004684 7.8e-164 581.6 473 66.8
Thecc.02G279800 Theobroma cacao HOM05D003955 ORTHO05D004684 4.6e-156 555.8 431 66.1
AagrBONN_evm.TU.Sc2ySwM_340.157 Anthoceros agrestis HOM05D003955 ORTHO05D004684 1.6e-153 547.4 693 47.8
SMO298G0047 Selaginella moellendorffii HOM05D003955 ORTHO05D004684 2.4e-152 543.5 697 42.3
Lalb_Chr06g0165551 Lupinus albus HOM05D003955 ORTHO05D004684 4.2e-149 532.7 424 66.3
HPP92_000152 Vanilla planifolia HOM05D003955 ORTHO05D004684 1.3e-142 511.1 494 55.1
Oeu031790.1 Olea europaea HOM05D003955 ORTHO05D004684 6.3e-121 439.1 356 63.8
SEGI_26510 Sequoiadendron giganteum HOM05D003955 ORTHO05D004684 3.2e-117 426.8 356 59.8
CBR_g51409 Chara braunii HOM05D003955 ORTHO05D004684 2.7e-116 423.7 483 53.0
Atru.chr9.1765 Acer truncatum HOM05D003955 ORTHO05D004684 1.5e-111 407.9 283 71.0
BolC5t33521H Brassica oleracea HOM05D003955 ORTHO05D004684 1.3e-105 388.3 408 51.0
Cc04_g06580 Coffea canephora HOM05D003955 ORTHO05D004684 1.5e-90 338.2 221 79.6
MCO02G121 Micromonas commoda HOM05D003955 ORTHO05D004684 5.0e-86 323.2 721 32.2
PRCOL_00004882 Prasinoderma coloniale HOM05D003955 ORTHO05D004684 8.3e-81 305.8 703 35.0
Lalb_Chr06g0165541 Lupinus albus HOM05D003955 ORTHO05D004684 4.1e-80 303.5 264 58.7
Haze_27019 Corylus avellana HOM05D003955 ORTHO05D004684 9.5e-69 265.8 592 32.4
Zm00001eb337090 Zea mays HOM05D003955 ORTHO05D004684 6.0e-63 246.5 183 72.1
Zm00001eb396840 Zea mays HOM05D003955 ORTHO05D004684 7.8e-63 246.1 183 72.1
Zm00001eb287030 Zea mays HOM05D003955 ORTHO05D004684 6.2e-60 236.5 164 76.8
Zm00001eb076360 Zea mays HOM05D003955 ORTHO05D004684 4.0e-59 233.8 164 76.2
Hund20688 Selenicereus undatus HOM05D003955 ORTHO05D004684 1.7e-57 228.4 131 81.7
Atru.chr9.1764 Acer truncatum HOM05D003955 ORTHO05D004684 1.4e-56 225.3 172 73.8
Ca_27465_v3 Cicer arietinum L. HOM05D003955 ORTHO05D004684 1.4e-56 225.3 128 82.0
TPR.G12747 Trifolium pratense HOM05D003955 ORTHO05D004684 1.6e-52 211.8 136 74.3
BcaC05g28709 Brassica carinata HOM05D003955 ORTHO05D004684 6.8e-51 206.5 128 75.0
Oeu031786.1 Olea europaea HOM05D003955 ORTHO05D004684 1.6e-47 195.3 128 75.8
BcaB03g13114 Brassica carinata HOM05D003955 ORTHO05D030800 2.3e-38 164.9 161 52.2
RcHm_v2.0_Chr5g0062751 Rosa chinensis HOM05D003955 ORTHO05D004684 1.1e-32 146.0 97 72.2
Oeu013618.1 Olea europaea HOM05D003955 ORTHO05D004684 3.0e-30 137.9 105 67.6
Zm00001eb221950 Zea mays HOM05D003955 ORTHO05D004684 1.5e-26 125.6 96 64.6
BcaB07g32970 Brassica carinata HOM05D003955 ORTHO05D004684 7.1e-24 116.7 166 42.8
Atru.chr5.1031 Acer truncatum HOM05D003955 ORTHO05D030800 7.9e-23 113.2 78 69.2
Zm00001eb369430 Zea mays HOM05D003955 ORTHO05D004684 2.0e-18 98.6 58 74.1
Actinidia37893 Actinidia chinensis HOM05D003955 ORTHO05D004684 3.5e-15 87.8 50 82.0
Actinidia37891 Actinidia chinensis HOM05D003955 ORTHO05D030800 1.0e-14 86.3 220 32.3
RcHm_v2.0_Chr6g0295791 Rosa chinensis HOM05D003955 ORTHO05D004684 8.2e-12 76.6 72 55.6
RcHm_v2.0_Chr6g0266701 Rosa chinensis HOM05D003955 ORTHO05D004684 1.1e-11 76.3 72 55.6
Zm00001eb265330 Zea mays HOM05D003955 ORTHO05D004684 2.9e-09 68.2 52 61.5
FvH4_5g16561 Fragaria vesca HOM05D020439 ORTHO05D035355 4.2e-08 64.3 38 71.1
COL.COLO4_22316 Corchorus olitorius HOM05D003955 ORTHO05D004684 1.6e-07 62.4 49 57.1
Duzib168G0754 Durio zibethinus HOM05D000836 ORTHO05D000709 7.9e-07 60.1 91 34.1
AUR62032365 Chenopodium quinoa HOM05D000836 ORTHO05D000709 5.1e-06 57.4 117 30.8
AUR62024855 Chenopodium quinoa HOM05D000836 ORTHO05D000709 8.8e-06 56.6 103 32.0
QL12p031494 Quercus lobata HOM05D000836 ORTHO05D000709 8.8e-06 56.6 91 33.0


User provided reference genes

Program Settings