Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0023577 Lotus japonicus HOM05D004619 ORTHO05D005738 7.5e-68 260.4 130 100.0
Lj1g0001172 Lotus japonicus HOM05D004619 ORTHO05D005738 1.7e-56 222.6 154 76.0
VMungo0647G0418 Vigna mungo HOM05D004619 ORTHO05D005738 1.1e-50 203.4 154 68.2
Phvul.001G074000 Phaseolus vulgaris HOM05D004619 ORTHO05D005738 1.4e-50 203.0 154 68.2
Glyma.17G193800 Glycine max HOM05D004619 ORTHO05D005738 1.8e-50 202.6 154 68.2
Medtr1g006690 Medicago truncatula HOM05D004619 ORTHO05D005738 1.8e-50 202.6 154 68.2
TPR.G24498 Trifolium pratense HOM05D004619 ORTHO05D005738 1.8e-50 202.6 154 67.5
Ca_12754_v3 Cicer arietinum L. HOM05D004619 ORTHO05D005738 1.2e-49 199.9 154 66.9
Lalb_Chr14g0362511 Lupinus albus HOM05D004619 ORTHO05D005738 2.0e-49 199.1 154 68.8
Psat6g038280 Pisum sativum HOM05D004619 ORTHO05D005738 4.5e-49 198.0 154 66.2
arahy.Tifrunner.gnm1.ann1.Z9IJD2 Arachis hypogaea HOM05D004619 ORTHO05D005738 5.0e-48 194.5 154 65.6
arahy.Tifrunner.gnm1.ann1.CES4LM Arachis hypogaea HOM05D004619 ORTHO05D005738 8.6e-48 193.7 154 65.6
CSS0016966 Camellia sinensis var. sinensis HOM05D004619 ORTHO05D005738 6.1e-46 187.6 154 64.3
CSS0048446 Camellia sinensis var. sinensis HOM05D004619 ORTHO05D005738 6.1e-46 187.6 154 64.3
Nn8g39783 Nelumbo nucifera HOM05D004619 ORTHO05D005738 1.2e-44 183.3 154 61.7
Hund19512 Selenicereus undatus HOM05D004619 ORTHO05D005738 2.6e-44 182.2 120 70.8
TAR636G2525 Trochodendron aralioides HOM05D004619 ORTHO05D005738 5.8e-44 181.0 154 61.7
Dinv27905 Davidia involucrata HOM05D004619 ORTHO05D005738 7.5e-44 180.6 154 61.7
Manes.16G075300 Manihot esculenta HOM05D004619 ORTHO05D005738 7.5e-44 180.6 156 59.0
Duzib168G0872 Durio zibethinus HOM05D004619 ORTHO05D005738 1.3e-43 179.9 154 61.7
FvH4_2g35520 Fragaria vesca HOM05D004619 ORTHO05D005738 1.3e-43 179.9 154 62.3
FAN27G0819 Fragaria x ananassa HOM05D004619 ORTHO05D005738 1.3e-43 179.9 154 62.3
CANSAT25G1337 Cannabis sativa HOM05D004619 ORTHO05D005738 2.2e-43 179.1 154 61.0
COL.COLO4_20972 Corchorus olitorius HOM05D004619 ORTHO05D005738 2.2e-43 179.1 154 61.7
Thecc.09G045500 Theobroma cacao HOM05D004619 ORTHO05D005738 2.2e-43 179.1 154 61.7
FAN20G0141 Fragaria x ananassa HOM05D004619 ORTHO05D005738 3.7e-43 178.3 154 61.7
Hma1.2p1_0049F.1_g028580 Hydrangea macrophylla HOM05D004619 ORTHO05D005738 4.9e-43 177.9 155 60.6
Hma1.2p1_0049F.1_g028570 Hydrangea macrophylla HOM05D004619 ORTHO05D005738 1.1e-42 176.8 154 60.4
RcHm_v2.0_Chr6g0306261 Rosa chinensis HOM05D004619 ORTHO05D005738 1.1e-42 176.8 154 61.7
Atru.chr7.2086 Acer truncatum HOM05D004619 ORTHO05D005738 1.9e-42 176.0 154 58.4
Actinidia15739 Actinidia chinensis HOM05D004619 ORTHO05D005738 1.9e-42 176.0 154 60.4
Lj8A581G22 Lonicera japonica HOM05D004619 ORTHO05D005738 1.9e-42 176.0 154 59.7
MD15G1093200 Malus domestica HOM05D004619 ORTHO05D005738 2.4e-42 175.6 154 61.0
CiPaw.07G204000 Carya illinoinensis HOM05D004619 ORTHO05D005738 5.4e-42 174.5 154 61.0
QL12p041325 Quercus lobata HOM05D004619 ORTHO05D005738 5.4e-42 174.5 154 61.7
Haze_21890 Corylus avellana HOM05D004619 ORTHO05D005738 7.0e-42 174.1 160 59.4
Cfa013367 Carpinus fangiana HOM05D004619 ORTHO05D005738 1.2e-41 173.3 154 60.4
PSO210G6185 Papaver somniferum HOM05D004619 ORTHO05D005738 1.2e-41 173.3 154 57.8
Prupe.1G448000 Prunus persica HOM05D004619 ORTHO05D005738 1.2e-41 173.3 154 59.7
Rhsim07G0146900 Rhododendron simsii HOM05D004619 ORTHO05D005738 1.2e-41 173.3 154 59.7
DCAR_004468 Daucus carota HOM05D004619 ORTHO05D005738 1.6e-41 172.9 154 58.4
Gohir.D06G092300 Gossypium hirsutum HOM05D004619 ORTHO05D005738 2.0e-41 172.6 154 60.4
Gorai.010G106300 Gossypium raimondii HOM05D004619 ORTHO05D005738 2.0e-41 172.6 154 60.4
PSO210G5473 Papaver somniferum HOM05D004619 ORTHO05D005738 2.0e-41 172.6 154 58.4
Aqoxy7G03899 Aquilegia oxysepala HOM05D004619 ORTHO05D005738 2.7e-41 172.2 154 61.0
Solyc08g066580.4 Solanum lycopersicum HOM05D004619 ORTHO05D005738 3.5e-41 171.8 154 58.4
Sopen08g020420 Solanum pennellii HOM05D004619 ORTHO05D005738 7.8e-41 170.6 154 57.8
vmacro05371 Vaccinium macrocarpon HOM05D004619 ORTHO05D005738 1.0e-40 170.2 154 58.4
Sabra18G0044100 Salix brachista HOM05D004619 ORTHO05D005738 1.3e-40 169.9 154 57.1
Sabra18G0044200 Salix brachista HOM05D004619 ORTHO05D005738 1.3e-40 169.9 154 57.1
AT4G32910 Arabidopsis thaliana HOM05D004619 ORTHO05D005738 2.3e-40 169.1 154 55.2
BcaC09g52091 Brassica carinata HOM05D004619 ORTHO05D005738 2.3e-40 169.1 154 55.2
C01p05790 Brassica napus HOM05D004619 ORTHO05D005738 2.3e-40 169.1 154 55.2
BolC1t00559H Brassica oleracea HOM05D004619 ORTHO05D005738 2.3e-40 169.1 154 55.2
BraA01t00511Z Brassica rapa HOM05D004619 ORTHO05D005738 2.3e-40 169.1 154 55.2
Potri.018G044300 Populus trichocarpa HOM05D004619 ORTHO05D005738 2.3e-40 169.1 154 57.1
Sed0007447 Sechium edule HOM05D004619 ORTHO05D005738 3.0e-40 168.7 156 57.7
GSVIVG01035621001 Vitis vinifera HOM05D004619 ORTHO05D005738 3.0e-40 168.7 154 59.1
AUR62039705 Chenopodium quinoa HOM05D004619 ORTHO05D005738 3.9e-40 168.3 153 56.2
Ciclev10007610m.g Citrus clementina HOM05D004619 ORTHO05D005738 3.9e-40 168.3 154 55.8
Thhalv10024536m.g Eutrema salsugineum HOM05D004619 ORTHO05D005738 6.6e-40 167.5 154 55.2
Eucgr.C00551 Eucalyptus grandis HOM05D004619 ORTHO05D005738 8.6e-40 167.2 154 58.4
AL7G18800 Arabidopsis lyrata HOM05D004619 ORTHO05D005738 1.5e-39 166.4 154 53.9
Nitab4.5_0001515g0010 Nicotiana tabacum HOM05D004619 ORTHO05D005738 1.5e-39 166.4 154 57.1
Nitab4.5_0003794g0010 Nicotiana tabacum HOM05D004619 ORTHO05D005738 1.5e-39 166.4 154 57.1
EL10Ac2g04016 Beta vulgaris HOM05D004619 ORTHO05D005738 2.5e-39 165.6 153 55.6
HanXRQChr13g0402061 Helianthus annuus HOM05D004619 ORTHO05D005738 3.3e-39 165.2 154 57.8
PGR031G0242 Punica granatum HOM05D004619 ORTHO05D005738 3.3e-39 165.2 154 57.8
ATR0705G091 Amborella trichopoda HOM05D004619 ORTHO05D005738 4.3e-39 164.9 154 57.1
A01p05370 Brassica napus HOM05D004619 ORTHO05D005738 4.3e-39 164.9 154 54.5
Carub.0007s0758 Capsella rubella HOM05D004619 ORTHO05D005738 4.3e-39 164.9 154 53.2
CAN.G400.8 Capsicum annuum HOM05D004619 ORTHO05D005738 4.3e-39 164.9 154 56.5
AUR62009276 Chenopodium quinoa HOM05D004619 ORTHO05D005738 4.3e-39 164.9 153 55.6
CARHR240910 Cardamine hirsuta HOM05D004619 ORTHO05D005738 5.6e-39 164.5 154 54.5
Peaxi162Scf00227g00812 Petunia axillaris HOM05D004619 ORTHO05D005738 5.6e-39 164.5 154 57.1
ECA233G0099 Erigeron canadensis HOM05D004619 ORTHO05D005738 9.5e-39 163.7 154 56.5
Sp7g30680 Schrenkiella parvula HOM05D004619 ORTHO05D005738 9.5e-39 163.7 154 53.9
Lsat_1_v5_gn_6_23120 Lactuca sativa HOM05D004619 ORTHO05D005738 1.2e-38 163.3 154 55.8
Eucgr.C00596 Eucalyptus grandis HOM05D004619 ORTHO05D005738 1.6e-38 162.9 154 57.8
Sc23g0005210 Simmondsia chinensis HOM05D004619 ORTHO05D005738 3.6e-38 161.8 154 54.5
CsaV3_2G030840 Cucumis sativus L. HOM05D004619 ORTHO05D005738 4.7e-38 161.4 154 53.9
MBI01_g18389_MAGBIO Magnolia biondii HOM05D004619 ORTHO05D005738 4.7e-38 161.4 154 55.8
MELO3C011139.2 Cucumis melo HOM05D004619 ORTHO05D005738 6.2e-38 161.0 155 54.2
THA.LOC104803757 Tarenaya hassleriana HOM05D004619 ORTHO05D005738 6.2e-38 161.0 154 52.6
HPP92_005572 Vanilla planifolia HOM05D004619 ORTHO05D005738 2.0e-36 156.0 154 51.3
CDE02G4285 Ceratophyllum demersum HOM05D004619 ORTHO05D005738 4.4e-36 154.8 154 53.9
Migut.E01528 Erythranthe guttata HOM05D004619 ORTHO05D005738 4.4e-36 154.8 154 54.5
Os01g0746200 Oryza sativa ssp. japonica HOM05D004619 ORTHO05D005738 5.8e-36 154.5 154 50.0
SalBow1G6937 Salvia bowleyana HOM05D004619 ORTHO05D005738 5.8e-36 154.5 154 51.9
unitig_578.g16587 Utricularia gibba HOM05D004619 ORTHO05D005738 9.8e-36 153.7 120 59.2
Zm00001eb152980 Zea mays HOM05D004619 ORTHO05D005738 2.2e-35 152.5 154 48.7
Aa31sc131G40 Aethionema arabicum HOM05D004619 ORTHO05D005738 4.9e-35 151.4 167 49.1
Ah.10g035010 Amaranthus hybridus HOM05D004619 ORTHO05D005738 6.4e-35 151.0 141 54.6
ClCG08G012210 Citrullus lanatus HOM05D004619 ORTHO05D005738 1.9e-34 149.4 143 53.8
SGA_v2.0_scaffold169G38654 Striga asiatica HOM05D004619 ORTHO05D005738 2.4e-34 149.1 155 51.0
Gohir.A06G092700 Gossypium hirsutum HOM05D004619 ORTHO05D005738 3.2e-34 148.7 154 55.2
Cc08_g09590 Coffea canephora HOM05D004619 ORTHO05D005738 2.1e-33 146.0 154 52.6
MSTRG.1660 Avicennia marina HOM05D004619 ORTHO05D005738 1.7e-32 142.9 154 49.4
SHI18685 Sapria himalayana HOM05D004619 ORTHO05D005738 1.2e-30 136.7 145 49.0
vmacro23276 Vaccinium macrocarpon HOM05D004619 ORTHO05D005738 2.7e-25 119.0 154 48.1
Pp3c16_3750 Physcomitrium patens HOM05D004619 ORTHO05D005738 6.6e-24 114.4 157 38.9
Cpa.g.sc2198.1 Carica papaya HOM05D004619 ORTHO05D005738 5.6e-23 111.3 86 61.6
SGA_v2.0_scaffold163G38073 Striga asiatica HOM05D004619 ORTHO05D005738 1.6e-22 109.8 122 47.5
AagrBONN_evm.TU.Sc2ySwM_368.2349 Anthoceros agrestis HOM05D004619 ORTHO05D005738 4.4e-20 101.7 148 39.9
FvH4_6g10180 Fragaria vesca HOM05D004619 ORTHO05D003203 1.2e-17 93.6 61 68.9
FAN14G2999 Fragaria x ananassa HOM05D004619 ORTHO05D003203 7.8e-17 90.9 69 62.3
Mapoly0014s0066 Marchantia polymorpha HOM05D004619 ORTHO05D005738 3.9e-16 88.6 145 35.9
Oeu031693.1 Olea europaea HOM05D004619 ORTHO05D005738 1.4e-13 80.1 51 74.5
Dinv23369 Davidia involucrata HOM05D004619 ORTHO05D005738 2.0e-12 76.3 52 69.2
SEGI_32974 Sequoiadendron giganteum HOM05D004619 ORTHO05D005738 2.0e-12 76.3 52 71.2
FvH4_4g13810 Fragaria vesca HOM05D004619 ORTHO05D005738 9.3e-10 67.4 80 51.2
SEGI_12145 Sequoiadendron giganteum HOM05D004619 ORTHO05D005738 6.0e-09 64.7 49 55.1
A06p44050 Brassica napus HOM05D004619 ORTHO05D005738 5.6e-07 58.2 43 65.1
BraA06t27279Z Brassica rapa HOM05D004619 ORTHO05D005738 5.6e-07 58.2 43 65.1
BcaC08g43687 Brassica carinata HOM05D004619 ORTHO05D005738 7.3e-07 57.8 43 65.1
BolC6t36187H Brassica oleracea HOM05D004619 ORTHO05D005738 7.3e-07 57.8 43 65.1
Lsat_1_v5_gn_8_131800 Lactuca sativa HOM05D003157 ORTHO05D004447 2.8e-06 55.8 35 74.3
C09p66170 Brassica napus HOM05D004619 ORTHO05D005738 8.1e-06 54.3 43 62.8
BolC9t59437H Brassica oleracea HOM05D004619 ORTHO05D005738 8.1e-06 54.3 43 62.8


User provided reference genes

Program Settings