Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0020498 Lotus japonicus HOM05D005979 ORTHO05D007848 1.1e-141 506.5 244 100.0
TPR.G19644 Trifolium pratense HOM05D005979 ORTHO05D007848 2.8e-124 448.7 244 86.9
Psat6g123280 Pisum sativum HOM05D005979 ORTHO05D007848 3.6e-124 448.4 244 88.1
Lalb_Chr02g0156521 Lupinus albus HOM05D005979 ORTHO05D007848 1.4e-123 446.4 244 87.7
Medtr1g051215 Medicago truncatula HOM05D005979 ORTHO05D007848 4.4e-122 441.4 244 86.1
Medtr0004s0600 Medicago truncatula HOM05D005979 ORTHO05D007848 1.7e-121 439.5 244 85.7
Phvul.002G285700 Phaseolus vulgaris HOM05D005979 ORTHO05D007848 2.4e-120 435.6 245 84.9
Ca_23806_v3 Cicer arietinum L. HOM05D005979 ORTHO05D007848 4.1e-120 434.9 244 83.6
Glyma.05G203800 Glycine max HOM05D005979 ORTHO05D007848 7.8e-119 430.6 244 84.8
VMungo0251G0166 Vigna mungo HOM05D005979 ORTHO05D007848 1.1e-117 426.8 245 83.7
MD04G1012500 Malus domestica HOM05D005979 ORTHO05D007848 5.6e-117 424.5 244 82.4
RcHm_v2.0_Chr4g0414381 Rosa chinensis HOM05D005979 ORTHO05D007848 7.6e-114 414.1 244 79.1
RcHm_v2.0_Chr6g0280571 Rosa chinensis HOM05D005979 ORTHO05D007848 7.6e-114 414.1 244 79.1
Cpa.g.sc5.208 Carica papaya HOM05D005979 ORTHO05D007848 1.3e-113 413.3 244 79.1
FvH4_4g13730 Fragaria vesca HOM05D005979 ORTHO05D007848 1.7e-113 412.9 244 79.1
FAN12G2831 Fragaria x ananassa HOM05D005979 ORTHO05D007848 1.7e-113 412.9 244 79.1
CiPaw.09G046000 Carya illinoinensis HOM05D005979 ORTHO05D007848 2.2e-113 412.5 244 80.3
ClCG09G016040 Citrullus lanatus HOM05D005979 ORTHO05D007848 2.2e-113 412.5 246 79.7
FAN17G0168 Fragaria x ananassa HOM05D005979 ORTHO05D007848 1.9e-112 409.5 244 79.1
Manes.09G007200 Manihot esculenta HOM05D005979 ORTHO05D007848 4.2e-112 408.3 244 80.7
Prupe.7G257800 Prunus persica HOM05D005979 ORTHO05D007848 1.2e-111 406.8 244 78.7
Cfa016688 Carpinus fangiana HOM05D005979 ORTHO05D007848 1.6e-111 406.4 244 79.1
Ciclev10021922m.g Citrus clementina HOM05D005979 ORTHO05D007848 1.6e-111 406.4 244 76.6
Dinv35473 Davidia involucrata HOM05D005979 ORTHO05D007848 7.8e-111 404.1 244 79.1
Sc18g0002150 Simmondsia chinensis HOM05D005979 ORTHO05D007848 1.0e-110 403.7 244 77.5
Cc02_g19250 Coffea canephora HOM05D005979 ORTHO05D007848 1.7e-110 402.9 244 77.0
Ah.09g228190 Amaranthus hybridus HOM05D005979 ORTHO05D007848 1.9e-109 399.4 244 73.4
QL07p008776 Quercus lobata HOM05D005979 ORTHO05D007848 1.9e-109 399.4 260 73.8
Sed0017937 Sechium edule HOM05D005979 ORTHO05D007848 1.9e-109 399.4 246 77.2
Eucgr.K01638 Eucalyptus grandis HOM05D005979 ORTHO05D007848 4.3e-109 398.3 245 75.9
CSS0035132 Camellia sinensis var. sinensis HOM05D005979 ORTHO05D007848 5.6e-109 397.9 244 78.3
CANSAT64G2596 Cannabis sativa HOM05D005979 ORTHO05D007848 5.6e-109 397.9 244 76.2
Gorai.013G116500 Gossypium raimondii HOM05D005979 ORTHO05D007848 9.6e-109 397.1 244 76.6
TWI77G1019 Tripterygium wilfordii HOM05D005979 ORTHO05D007848 1.6e-108 396.4 242 76.0
arahy.Tifrunner.gnm1.ann1.Y5SS6T Arachis hypogaea HOM05D005979 ORTHO05D007848 2.1e-108 396.0 244 79.5
MBI09_g07121_MAGBIO Magnolia biondii HOM05D005979 ORTHO05D007848 4.8e-108 394.8 244 76.2
CsaV3_4G027840 Cucumis sativus L. HOM05D005979 ORTHO05D007848 6.2e-108 394.4 246 76.0
Thecc.05G139000 Theobroma cacao HOM05D005979 ORTHO05D007848 6.2e-108 394.4 244 76.2
Gohir.A13G100300 Gossypium hirsutum HOM05D005979 ORTHO05D007848 1.4e-107 393.3 244 76.2
Gohir.D13G103900 Gossypium hirsutum HOM05D005979 ORTHO05D007848 1.8e-107 392.9 244 76.2
Nn7g36654 Nelumbo nucifera HOM05D005979 ORTHO05D007848 1.8e-107 392.9 244 75.8
THA.LOC104823212 Tarenaya hassleriana HOM05D005979 ORTHO05D007848 5.3e-107 391.3 244 74.6
Duzib093G1926 Durio zibethinus HOM05D005979 ORTHO05D007848 1.2e-106 390.2 242 76.4
GSVIVG01033606001 Vitis vinifera HOM05D005979 ORTHO05D007848 1.2e-106 390.2 244 76.6
Migut.B00389 Erythranthe guttata HOM05D005979 ORTHO05D007848 3.4e-106 388.7 244 74.6
AL3G21560 Arabidopsis lyrata HOM05D005979 ORTHO05D007848 4.5e-106 388.3 244 73.0
CAN.G637.20 Capsicum annuum HOM05D005979 ORTHO05D007848 4.5e-106 388.3 244 73.8
Actinidia40001 Actinidia chinensis HOM05D005979 ORTHO05D007848 9.9e-106 387.1 244 76.6
Potri.006G041400 Populus trichocarpa HOM05D005979 ORTHO05D007848 9.9e-106 387.1 244 73.0
HanXRQChr05g0144951 Helianthus annuus HOM05D005979 ORTHO05D007848 2.2e-105 386.0 244 73.4
BcaB04g21222 Brassica carinata HOM05D005979 ORTHO05D007848 6.4e-105 384.4 244 72.5
Gohir.D04G132100 Gossypium hirsutum HOM05D005979 ORTHO05D007848 1.1e-104 383.6 244 74.2
Carub.0003s0939 Capsella rubella HOM05D005979 ORTHO05D007848 1.4e-104 383.3 244 72.1
AUR62033954 Chenopodium quinoa HOM05D005979 ORTHO05D007848 1.4e-104 383.3 245 73.5
Lsat_1_v5_gn_0_460 Lactuca sativa HOM05D005979 ORTHO05D007848 5.4e-104 381.3 242 72.7
Solyc03g098170.3 Solanum lycopersicum HOM05D005979 ORTHO05D007848 7.1e-104 380.9 245 73.5
Sopen03g028870 Solanum pennellii HOM05D005979 ORTHO05D007848 7.1e-104 380.9 245 73.5
Aa31LG3G2790 Aethionema arabicum HOM05D005979 ORTHO05D007848 2.1e-103 379.4 244 70.9
ECA232G1805 Erigeron canadensis HOM05D005979 ORTHO05D007848 2.1e-103 379.4 242 71.9
PGSC0003DMG400031053 Solanum tuberosum HOM05D005979 ORTHO05D007848 2.1e-103 379.4 245 73.5
Atru.chr1.1490 Acer truncatum HOM05D005979 ORTHO05D007848 2.7e-103 379.0 230 76.1
CARHR084710 Cardamine hirsuta HOM05D005979 ORTHO05D007848 4.6e-103 378.3 244 72.1
Sp3g08500 Schrenkiella parvula HOM05D005979 ORTHO05D007848 6.0e-103 377.9 244 71.7
AT3G10220 Arabidopsis thaliana HOM05D005979 ORTHO05D007848 7.9e-103 377.5 244 71.7
Oeu013750.3 Olea europaea HOM05D005979 ORTHO05D007848 1.0e-102 377.1 285 65.6
unitig_0.g99 Utricularia gibba HOM05D005979 ORTHO05D007848 1.0e-102 377.1 244 73.4
BolC5t34447H Brassica oleracea HOM05D005979 ORTHO05D007848 2.3e-102 375.9 244 70.9
Aqoxy2G00350 Aquilegia oxysepala HOM05D005979 ORTHO05D007848 3.0e-102 375.6 244 71.7
vmacro19992 Vaccinium macrocarpon HOM05D005979 ORTHO05D007848 5.1e-102 374.8 275 66.2
MELO3C019044.2 Cucumis melo HOM05D005979 ORTHO05D007848 8.7e-102 374.0 229 76.4
DCAR_001099 Daucus carota HOM05D005979 ORTHO05D007848 1.5e-101 373.2 242 69.8
Thhalv10021412m.g Eutrema salsugineum HOM05D005979 ORTHO05D007848 1.9e-101 372.9 244 70.5
ATR1134G092 Amborella trichopoda HOM05D005979 ORTHO05D007848 3.3e-101 372.1 245 73.5
BraA05t22680Z Brassica rapa HOM05D005979 ORTHO05D007848 5.6e-101 371.3 245 71.0
COL.COLO4_00190 Corchorus olitorius HOM05D005979 ORTHO05D007848 5.6e-101 371.3 242 73.6
A05p38880 Brassica napus HOM05D005979 ORTHO05D007848 9.6e-101 370.5 245 71.0
CDE06G1795 Ceratophyllum demersum HOM05D005979 ORTHO05D007848 9.6e-101 370.5 244 70.1
CDE08G1123 Ceratophyllum demersum HOM05D005979 ORTHO05D007848 9.6e-101 370.5 244 70.5
SGA_v2.0_scaffold32G13036 Striga asiatica HOM05D005979 ORTHO05D007848 9.6e-101 370.5 276 65.9
C05p57920 Brassica napus HOM05D005979 ORTHO05D007848 1.3e-100 370.2 246 71.1
Rhsim05G0172800 Rhododendron simsii HOM05D005979 ORTHO05D007848 1.6e-100 369.8 296 62.2
TAR633G0311 Trochodendron aralioides HOM05D005979 ORTHO05D007848 1.6e-100 369.8 231 74.5
BcaNung05525 Brassica carinata HOM05D005979 ORTHO05D007848 6.2e-100 367.9 245 69.8
Hund26899 Selenicereus undatus HOM05D005979 ORTHO05D007848 1.4e-99 366.7 254 69.3
Hma1.2p1_0075F.1_g039230 Hydrangea macrophylla HOM05D005979 ORTHO05D007848 3.1e-99 365.5 229 75.1
Haze_19714 Corylus avellana HOM05D005979 ORTHO05D007848 5.8e-98 361.3 214 78.0
HPP92_006880 Vanilla planifolia HOM05D005979 ORTHO05D007848 8.4e-97 357.5 244 68.0
EL10Ac8g19200 Beta vulgaris HOM05D005979 ORTHO05D007848 2.4e-96 355.9 241 69.7
HPP92_006862 Vanilla planifolia HOM05D005979 ORTHO05D007848 4.2e-96 355.1 244 68.0
SalBow6G2287 Salvia bowleyana HOM05D005979 ORTHO05D007848 1.0e-94 350.5 328 56.4
PSO170G5780 Papaver somniferum HOM05D005979 ORTHO05D007848 2.8e-92 342.4 210 76.7
Os04g0692100 Oryza sativa ssp. japonica HOM05D005979 ORTHO05D007848 4.5e-90 335.1 244 66.0
Prupe.1G158700 Prunus persica HOM05D005979 ORTHO05D007848 1.9e-88 329.7 205 75.1
COL.COLO4_36506 Corchorus olitorius HOM05D005979 ORTHO05D007848 1.6e-87 326.6 205 76.6
Gorai.012G115900 Gossypium raimondii HOM05D005979 ORTHO05D007848 1.5e-85 320.1 209 72.2
Mapoly0016s0206 Marchantia polymorpha HOM05D005979 ORTHO05D007848 1.4e-83 313.5 248 58.5
Zm00001eb076570 Zea mays HOM05D005979 ORTHO05D007848 2.4e-83 312.8 281 54.8
Pp3c13_18250 Physcomitrium patens HOM05D005979 ORTHO05D007848 4.2e-80 302.0 246 56.1
Nitab4.5_0001180g0050 Nicotiana tabacum HOM05D005979 ORTHO05D007848 2.7e-79 299.3 301 54.2
AUR62029060 Chenopodium quinoa HOM05D005979 ORTHO05D007848 6.1e-79 298.1 244 59.8
Nitab4.5_0003715g0020 Nicotiana tabacum HOM05D005979 ORTHO05D007848 6.7e-78 294.7 244 60.7
Lj2A41G64 Lonicera japonica HOM05D005979 ORTHO05D007848 7.4e-77 291.2 214 69.2
AagrBONN_evm.TU.Sc2ySwM_228.4763 Anthoceros agrestis HOM05D005979 ORTHO05D007848 1.0e-70 270.8 313 45.0
CBR_g30186 Chara braunii HOM05D005979 ORTHO05D007848 2.2e-65 253.1 260 49.2
Cre15.g636300 Chlamydomonas reinhardtii HOM05D005979 ORTHO05D007848 2.7e-63 246.1 247 51.8
AUR62032907 Chenopodium quinoa HOM05D005979 ORTHO05D007848 2.2e-57 226.5 251 47.0
MCO14G471 Micromonas commoda HOM05D005979 ORTHO05D007848 3.6e-55 219.2 262 43.5
PRCOL_00000740 Prasinoderma coloniale HOM05D005979 ORTHO05D007848 3.6e-55 219.2 237 48.1
Peaxi162Scf00171g00620 Petunia axillaris HOM05D005979 ORTHO05D007848 7.5e-53 211.5 340 41.5
Gohir.A04G092832 Gossypium hirsutum HOM05D005979 ORTHO05D007848 8.2e-52 208.0 147 70.1
Nitab4.5_0005200g0020 Nicotiana tabacum HOM05D005979 ORTHO05D007848 1.3e-49 200.7 126 77.0
Sabra06G0028100 Salix brachista HOM05D005979 ORTHO05D007848 1.8e-43 180.3 110 72.7
BcaC09g48108 Brassica carinata HOM05D005979 ORTHO05D007848 1.8e-38 163.7 127 63.0
COL.COLO4_00246 Corchorus olitorius HOM05D005979 ORTHO05D007848 4.1e-35 152.5 97 75.3
Nitab4.5_0005200g0030 Nicotiana tabacum HOM05D005979 ORTHO05D007848 3.3e-32 142.9 83 73.5
FAN03G2583 Fragaria x ananassa HOM05D005979 ORTHO05D007848 7.0e-27 125.2 83 71.1
FAN08G3312 Fragaria x ananassa HOM05D005979 ORTHO05D007848 7.0e-27 125.2 83 71.1
FAN25G1846 Fragaria x ananassa HOM05D005979 ORTHO05D007848 6.2e-23 112.1 75 72.0
SEGI_39367 Sequoiadendron giganteum HOM05D005979 ORTHO05D007848 1.4e-22 110.9 59 83.1
Glyma.08G011202 Glycine max HOM05D005979 ORTHO05D007848 3.2e-19 99.8 63 77.8
SEGI_37896 Sequoiadendron giganteum HOM05D005979 ORTHO05D007848 2.3e-17 93.6 139 43.9
BraA01t04540Z Brassica rapa HOM05D005979 ORTHO05D007848 2.6e-13 80.1 51 68.6
A01p41990 Brassica napus HOM05D005979 ORTHO05D041676 9.9e-13 78.2 122 41.0
A01p41070 Brassica napus HOM05D005979 ORTHO05D007848 1.3e-12 77.8 51 66.7
BNapus_Darmor_BZH_scaffold_78p00640 Brassica napus HOM05D005979 ORTHO05D007848 1.3e-12 77.8 51 66.7
CBR_g27740 Chara braunii HOM05D000738 ORTHO05D000675 1.3e-09 67.8 101 36.6
BolC1t05773H Brassica oleracea HOM05D005979 ORTHO05D007848 2.3e-09 67.0 43 65.1
BraA01t04267Z Brassica rapa HOM05D005979 ORTHO05D041676 3.0e-09 66.6 37 78.4
MCO15G211 Micromonas commoda HOM05D005625 ORTHO05D007564 6.2e-07 58.9 76 44.7
BcaC09g47773 Brassica carinata HOM05D005979 ORTHO05D007848 1.1e-06 58.2 38 63.2
ATR1089G039 Amborella trichopoda HOM05D005625 ORTHO05D007564 1.4e-06 57.8 75 41.3
Pp3c13_4420 Physcomitrium patens HOM05D005625 ORTHO05D007564 2.4e-06 57.0 77 41.6
HanXRQChr11g0326321 Helianthus annuus HOM05D005625 ORTHO05D007564 4.0e-06 56.2 75 38.7
Sc14g0005960 Simmondsia chinensis HOM05D005625 ORTHO05D007564 5.2e-06 55.8 73 43.8


User provided reference genes

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