Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0018811 Lotus japonicus HOM05D005598 ORTHO05D006587 2.6e-169 598.6 297 100.0
TPR.G2473 Trifolium pratense HOM05D005598 ORTHO05D006587 5.0e-152 541.2 298 89.6
Ca_25662_v3 Cicer arietinum L. HOM05D005598 ORTHO05D006587 4.7e-150 534.6 299 89.0
Lalb_Chr02g0146251 Lupinus albus HOM05D005598 ORTHO05D006587 2.0e-148 529.3 299 87.0
Medtr1g111980 Medicago truncatula HOM05D005598 ORTHO05D006587 4.4e-148 528.1 299 87.6
arahy.Tifrunner.gnm1.ann1.8DLZ0X Arachis hypogaea HOM05D005598 ORTHO05D006587 2.4e-146 522.3 297 85.5
arahy.Tifrunner.gnm1.ann1.L8YGTT Arachis hypogaea HOM05D005598 ORTHO05D006587 1.2e-145 520.0 298 85.2
Phvul.007G022800 Phaseolus vulgaris HOM05D005598 ORTHO05D006587 4.7e-142 508.1 301 84.4
VMungo0720G0111 Vigna mungo HOM05D005598 ORTHO05D006587 8.9e-141 503.8 300 84.3
Rhsim09G0141700 Rhododendron simsii HOM05D005598 ORTHO05D006587 5.7e-140 501.1 298 82.6
CSS0000091 Camellia sinensis var. sinensis HOM05D005598 ORTHO05D006587 1.7e-139 499.6 298 82.6
Nn6g34854 Nelumbo nucifera HOM05D005598 ORTHO05D006587 2.2e-139 499.2 299 82.6
TAR636G1340 Trochodendron aralioides HOM05D005598 ORTHO05D006587 2.8e-139 498.8 298 82.6
GSVIVG01010722001 Vitis vinifera HOM05D005598 ORTHO05D006587 2.8e-139 498.8 298 82.6
PGR142G4231 Punica granatum HOM05D005598 ORTHO05D006587 6.3e-139 497.7 301 81.1
CiPaw.13G040600 Carya illinoinensis HOM05D005598 ORTHO05D006587 2.4e-138 495.7 298 81.2
Duzib128G1802 Durio zibethinus HOM05D005598 ORTHO05D006587 2.3e-136 489.2 298 80.2
QL04p046731 Quercus lobata HOM05D005598 ORTHO05D006587 3.8e-136 488.4 299 80.6
Atru.chr12.1043 Acer truncatum HOM05D005598 ORTHO05D006587 6.6e-136 487.6 300 79.7
CsaV3_4G003460 Cucumis sativus L. HOM05D005598 ORTHO05D006587 6.6e-136 487.6 298 80.5
Haze_03295 Corylus avellana HOM05D005598 ORTHO05D006587 1.9e-135 486.1 309 78.6
Gohir.D05G288900 Gossypium hirsutum HOM05D005598 ORTHO05D006587 3.3e-135 485.3 299 78.9
Cc02_g09610 Coffea canephora HOM05D005598 ORTHO05D006587 9.5e-135 483.8 298 80.2
Potri.008G019800 Populus trichocarpa HOM05D005598 ORTHO05D006587 9.5e-135 483.8 298 80.5
Eucgr.G02689 Eucalyptus grandis HOM05D005598 ORTHO05D006587 1.6e-134 483.0 297 78.1
TWI38G0756 Tripterygium wilfordii HOM05D005598 ORTHO05D006587 1.6e-134 483.0 298 80.2
Gohir.A05G287700 Gossypium hirsutum HOM05D005598 ORTHO05D006587 2.1e-134 482.6 299 78.3
Gorai.009G304000 Gossypium raimondii HOM05D005598 ORTHO05D006587 3.6e-134 481.9 299 78.6
HanXRQChr11g0342091 Helianthus annuus HOM05D005598 ORTHO05D006587 4.7e-134 481.5 298 78.9
MD02G1261600 Malus domestica HOM05D005598 ORTHO05D006587 4.7e-134 481.5 300 79.0
Lj2C33T4 Lonicera japonica HOM05D005598 ORTHO05D006587 6.1e-134 481.1 298 80.5
MELO3C017716.2 Cucumis melo HOM05D005598 ORTHO05D006587 8.0e-134 480.7 298 79.5
Thecc.10G109100 Theobroma cacao HOM05D005598 ORTHO05D006587 1.4e-133 479.9 300 80.3
Sabra08G0013100 Salix brachista HOM05D005598 ORTHO05D006587 2.3e-133 479.2 299 78.9
Hund06785 Selenicereus undatus HOM05D005598 ORTHO05D006587 4.0e-133 478.4 299 80.6
EL10Ac4g08688 Beta vulgaris HOM05D005598 ORTHO05D006587 8.9e-133 477.2 299 78.9
Peaxi162Scf00173g00110 Petunia axillaris HOM05D005598 ORTHO05D006587 8.9e-133 477.2 298 79.2
Sc09g0005330 Simmondsia chinensis HOM05D005598 ORTHO05D006587 2.0e-132 476.1 298 77.9
Ciclev10016103m.g Citrus clementina HOM05D005598 ORTHO05D006587 2.6e-132 475.7 298 77.2
Nitab4.5_0003590g0030 Nicotiana tabacum HOM05D005598 ORTHO05D006587 4.4e-132 474.9 298 77.9
MSTRG.23901 Avicennia marina HOM05D005598 ORTHO05D006587 5.8e-132 474.6 302 79.5
AUR62042081 Chenopodium quinoa HOM05D005598 ORTHO05D006587 5.8e-132 474.6 293 80.5
Lsat_1_v5_gn_2_104400 Lactuca sativa HOM05D005598 ORTHO05D006587 5.8e-132 474.6 292 79.1
RcHm_v2.0_Chr5g0049931 Rosa chinensis HOM05D005598 ORTHO05D006587 7.5e-132 474.2 298 77.2
ClCG07G015650 Citrullus lanatus HOM05D005598 ORTHO05D006587 9.8e-132 473.8 329 72.9
DCAR_006354 Daucus carota HOM05D005598 ORTHO05D006587 1.3e-131 473.4 298 78.2
Migut.F01603 Erythranthe guttata HOM05D005598 ORTHO05D006587 3.7e-131 471.9 299 79.3
Sed0022725 Sechium edule HOM05D005598 ORTHO05D006587 6.4e-131 471.1 298 77.5
Sopen11g002760 Solanum pennellii HOM05D005598 ORTHO05D006587 8.3e-131 470.7 298 77.2
PGSC0003DMG400023970 Solanum tuberosum HOM05D005598 ORTHO05D006587 8.3e-131 470.7 298 77.5
Solyc11g006860.2 Solanum lycopersicum HOM05D005598 ORTHO05D006587 1.9e-130 469.5 298 77.2
CAN.G645.19 Capsicum annuum HOM05D005598 ORTHO05D006587 4.1e-130 468.4 298 77.9
Oeu024809.1 Olea europaea HOM05D005598 ORTHO05D006587 9.2e-130 467.2 331 71.9
vmacro10312 Vaccinium macrocarpon HOM05D005598 ORTHO05D006587 1.6e-129 466.5 298 77.2
ECA238G1649 Erigeron canadensis HOM05D005598 ORTHO05D006587 2.3e-128 462.6 300 77.3
CDE08G1414 Ceratophyllum demersum HOM05D005598 ORTHO05D006587 3.0e-128 462.2 298 76.8
Aqoxy4G02744 Aquilegia oxysepala HOM05D005598 ORTHO05D006587 5.0e-128 461.5 301 76.1
THA.LOC104824207 Tarenaya hassleriana HOM05D005598 ORTHO05D006587 1.5e-127 459.9 301 75.7
Glyma.10G278500 Glycine max HOM05D005598 ORTHO05D006587 4.3e-127 458.4 269 85.5
PSO339G6152 Papaver somniferum HOM05D005598 ORTHO05D006587 4.3e-127 458.4 302 76.5
CANSAT56G2222 Cannabis sativa HOM05D005598 ORTHO05D006587 5.6e-127 458.0 299 76.3
FAN11G2626 Fragaria x ananassa HOM05D005598 ORTHO05D006587 1.2e-126 456.8 298 75.2
SalBow6G5745 Salvia bowleyana HOM05D005598 ORTHO05D006587 1.2e-126 456.8 303 77.6
COL.COLO4_38547 Corchorus olitorius HOM05D005598 ORTHO05D006587 2.1e-126 456.1 282 79.4
FvH4_3g27560 Fragaria vesca HOM05D005598 ORTHO05D006587 1.1e-125 453.8 298 74.8
ATR0820G296 Amborella trichopoda HOM05D005598 ORTHO05D006587 2.3e-125 452.6 290 75.9
Nitab4.5_0002586g0090 Nicotiana tabacum HOM05D005598 ORTHO05D006587 3.1e-125 452.2 332 69.0
Sp4g04110 Schrenkiella parvula HOM05D005598 ORTHO05D006587 3.1e-125 452.2 298 74.5
AT2G25100 Arabidopsis thaliana HOM05D005598 ORTHO05D006587 8.9e-125 450.7 298 73.5
Aa31LG7G12150 Aethionema arabicum HOM05D005598 ORTHO05D006587 2.6e-124 449.1 298 74.5
Carub.0004s0468 Capsella rubella HOM05D005598 ORTHO05D006587 3.4e-124 448.7 298 73.2
HPP92_000055 Vanilla planifolia HOM05D005598 ORTHO05D006587 4.4e-124 448.4 297 74.7
BcaB06g28035 Brassica carinata HOM05D005598 ORTHO05D006587 9.8e-124 447.2 291 74.6
Manes.10G062100 Manihot esculenta HOM05D005598 ORTHO05D006587 9.8e-124 447.2 281 79.0
FAN16G3025 Fragaria x ananassa HOM05D005598 ORTHO05D006587 1.7e-123 446.4 298 73.5
BcaC02g08374 Brassica carinata HOM05D005598 ORTHO05D006587 2.9e-123 445.7 291 74.6
C04p55060 Brassica napus HOM05D005598 ORTHO05D006587 2.9e-123 445.7 291 74.6
BolC4t27046H Brassica oleracea HOM05D005598 ORTHO05D006587 2.9e-123 445.7 291 74.6
BraA04t17544Z Brassica rapa HOM05D005598 ORTHO05D006587 2.9e-123 445.7 291 74.2
A04p19500 Brassica napus HOM05D005598 ORTHO05D006587 4.9e-123 444.9 291 73.9
Os11g0153900 Oryza sativa ssp. japonica HOM05D005598 ORTHO05D006587 1.4e-122 443.4 294 73.8
CARHR116600 Cardamine hirsuta HOM05D005598 ORTHO05D006587 1.6e-121 439.9 298 72.1
Dinv10930 Davidia involucrata HOM05D005598 ORTHO05D006587 3.0e-120 435.6 239 85.8
CSS0039611 Camellia sinensis var. sinensis HOM05D005598 ORTHO05D006587 5.1e-120 434.9 311 71.7
Actinidia34728 Actinidia chinensis HOM05D005598 ORTHO05D006587 1.9e-119 433.0 248 82.3
TWI63G1098 Tripterygium wilfordii HOM05D005598 ORTHO05D006587 2.3e-117 426.0 297 72.7
SGA_v2.0_scaffold62G21319 Striga asiatica HOM05D005598 ORTHO05D006587 5.8e-116 421.4 279 75.6
Dinv11826 Davidia involucrata HOM05D005598 ORTHO05D006587 7.5e-116 421.0 268 79.9
SEGI_12354 Sequoiadendron giganteum HOM05D005598 ORTHO05D006587 7.5e-116 421.0 292 70.5
Prupe.2G069600 Prunus persica HOM05D005598 ORTHO05D006587 1.6e-113 413.3 237 81.4
Psat0s4121g0080 Pisum sativum HOM05D005598 ORTHO05D006587 5.1e-112 408.3 238 84.0
unitig_736.g22318 Utricularia gibba HOM05D005598 ORTHO05D006587 2.5e-111 406.0 294 68.4
Thhalv10000575m.g Eutrema salsugineum HOM05D005598 ORTHO05D006587 6.2e-110 401.4 291 69.1
Cpa.g.c34135 Carica papaya HOM05D005598 ORTHO05D006587 9.9e-108 394.0 222 84.2
PSO801G0206 Papaver somniferum HOM05D005598 ORTHO05D006587 1.7e-107 393.3 241 78.4
Zm00001eb406890 Zea mays HOM05D005598 ORTHO05D006587 1.4e-106 390.2 267 71.9
MBI01_g02157_MAGBIO Magnolia biondii HOM05D005598 ORTHO05D006587 1.5e-103 380.2 248 77.4
Mapoly0006s0052 Marchantia polymorpha HOM05D005598 ORTHO05D006587 6.4e-91 338.2 293 56.3
Pp3c13_7860 Physcomitrium patens HOM05D005598 ORTHO05D006587 1.9e-90 336.7 288 58.3
AagrBONN_evm.TU.Sc2ySwM_362.477 Anthoceros agrestis HOM05D005598 ORTHO05D006587 6.7e-88 328.2 286 57.0
AUR62041514 Chenopodium quinoa HOM05D005598 ORTHO05D006587 2.5e-82 309.7 416 47.4
AL4G16260 Arabidopsis lyrata HOM05D005598 ORTHO05D006587 1.0e-80 304.3 208 72.6
DCAR_006363 Daucus carota HOM05D005598 ORTHO05D006587 1.0e-80 304.3 282 62.4
SMO347G0320 Selaginella moellendorffii HOM05D005598 ORTHO05D006587 2.5e-66 256.5 271 50.9
Lalb_Chr21g0309151 Lupinus albus HOM05D005598 ORTHO05D006587 2.1e-65 253.4 153 83.7
CiPaw.14G033400 Carya illinoinensis HOM05D005598 ORTHO05D006587 7.7e-60 235.0 258 57.0
Psat4g059000 Pisum sativum HOM05D005598 ORTHO05D006587 3.0e-56 223.0 117 85.5
Haze_26455 Corylus avellana HOM05D005598 ORTHO05D006587 3.9e-56 222.6 256 45.7
Ah.04g160180 Amaranthus hybridus HOM05D005598 ORTHO05D006587 1.4e-53 214.2 119 85.7
Cre17.g701350 Chlamydomonas reinhardtii HOM05D005598 ORTHO05D006587 2.4e-53 213.4 290 39.0
Glyma.07G162800 Glycine max HOM05D005598 ORTHO05D006587 1.8e-48 197.2 224 52.7
CBR_g29781 Chara braunii HOM05D005598 ORTHO05D006587 6.3e-46 188.7 190 52.6
MD02G1261400 Malus domestica HOM05D005598 ORTHO05D006587 2.3e-40 170.2 175 54.9
HanXRQChr05g0158341 Helianthus annuus HOM05D005598 ORTHO05D006587 4.5e-36 156.0 111 68.5
Cfa026153 Carpinus fangiana HOM05D005598 ORTHO05D006587 5.5e-34 149.1 234 38.0
Psat0s449g0080 Pisum sativum HOM05D000909 ORTHO05D000928 3.7e-30 136.3 73 86.3
Zm00001eb407010 Zea mays HOM05D005598 ORTHO05D006587 1.0e-24 118.2 82 73.2
Psat0s1058g0040 Pisum sativum HOM05D005598 ORTHO05D006587 1.7e-19 100.9 52 90.4
Lsat_1_v5_gn_9_94660 Lactuca sativa HOM05D005598 ORTHO05D006587 9.5e-18 95.1 60 78.3
SEGI_12669 Sequoiadendron giganteum HOM05D005598 ORTHO05D006587 1.6e-17 94.4 54 79.6
Psat5g185320 Pisum sativum HOM05D000559 ORTHO05D006587 2.1e-17 94.0 52 80.8
Psat5g299440 Pisum sativum HOM05D005598 ORTHO05D006587 4.7e-17 92.8 120 44.2
Psat4g071240 Pisum sativum HOM05D005598 ORTHO05D006587 8.0e-17 92.0 203 32.0
Lalb_Chr21g0309141 Lupinus albus HOM05D005598 ORTHO05D006587 7.5e-15 85.5 54 79.6
Lalb_Chr21g0309161 Lupinus albus HOM05D005598 ORTHO05D006587 6.4e-14 82.4 59 78.0
MBI01_g19134_MAGBIO Magnolia biondii HOM05D005598 ORTHO05D006587 6.4e-14 82.4 47 78.7
Sabra10G0187600 Salix brachista HOM05D005598 ORTHO05D006587 3.5e-12 76.6 59 62.7
Psat6g162040 Pisum sativum HOM05D005598 ORTHO05D006587 1.6e-09 67.8 61 63.9
Cre13.g561900 Chlamydomonas reinhardtii HOM05D016613 ORTHO05D014817 1.4e-08 64.7 162 30.9
A09p55890 Brassica napus HOM05D005598 ORTHO05D040595 1.2e-07 61.6 75 42.7
BraA09t40992Z Brassica rapa HOM05D005598 ORTHO05D040595 2.0e-07 60.8 59 50.8
MCO01G455 Micromonas commoda HOM05D016613 ORTHO05D014817 2.6e-07 60.5 164 29.9
Pp3c2_19600 Physcomitrium patens HOM05D016613 ORTHO05D014817 2.6e-07 60.5 168 31.0
Psat6g121040 Pisum sativum HOM05D005598 ORTHO05D324080 2.6e-07 60.5 232 27.2
Psat7g021760 Pisum sativum HOM05D000559 ORTHO05D000596 2.6e-07 60.5 28 89.3
ClCG05G021840 Citrullus lanatus HOM05D005598 ORTHO05D006587 3.4e-07 60.1 93 43.0
Mapoly0023s0164 Marchantia polymorpha HOM05D016613 ORTHO05D014817 3.4e-07 60.1 183 29.5
BolC8t51460H Brassica oleracea HOM05D005598 ORTHO05D041141 1.3e-06 58.2 42 69.0
SMO118G0286 Selaginella moellendorffii HOM05D016613 ORTHO05D014817 4.9e-06 56.2 184 26.1


User provided reference genes

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