Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0018758 Lotus japonicus HOM05D003810 ORTHO05D004416 0.0e+00 1133.6 584 100.0
Phvul.007G134900 Phaseolus vulgaris HOM05D003810 ORTHO05D004416 1.8e-283 978.8 586 86.3
Glyma.20G197500 Glycine max HOM05D003810 ORTHO05D004416 2.0e-282 975.3 585 85.3
Ca_10408_v3 Cicer arietinum L. HOM05D003810 ORTHO05D004416 1.0e-281 973.0 611 82.7
VMungo0720G2836 Vigna mungo HOM05D003810 ORTHO05D004416 2.9e-281 971.5 583 86.3
TPR.G13386 Trifolium pratense HOM05D003810 ORTHO05D004416 1.9e-272 942.2 579 83.4
arahy.Tifrunner.gnm1.ann1.KKS8QY Arachis hypogaea HOM05D003810 ORTHO05D004416 1.8e-270 935.6 583 83.0
Medtr1g090110 Medicago truncatula HOM05D003810 ORTHO05D004416 1.5e-269 932.6 579 82.9
Glyma.10G193000 Glycine max HOM05D003810 ORTHO05D004416 5.6e-264 914.1 585 82.2
Psat6g170400 Pisum sativum HOM05D003810 ORTHO05D004416 6.2e-263 910.6 582 80.1
arahy.Tifrunner.gnm1.ann1.60T2A8 Arachis hypogaea HOM05D003810 ORTHO05D004416 4.6e-250 867.8 583 78.6
Medtr6g071555 Medicago truncatula HOM05D003810 ORTHO05D004416 3.6e-247 858.2 580 77.6
Cfa016940 Carpinus fangiana HOM05D003810 ORTHO05D004416 2.6e-221 772.3 601 66.4
CsaV3_4G027560 Cucumis sativus L. HOM05D003810 ORTHO05D004416 4.2e-219 765.0 593 66.4
QL08p001596 Quercus lobata HOM05D003810 ORTHO05D004416 7.1e-219 764.2 610 65.4
MELO3C020474.2 Cucumis melo HOM05D003810 ORTHO05D004416 2.1e-218 762.7 593 66.3
Sed0019869 Sechium edule HOM05D003810 ORTHO05D004416 6.0e-218 761.1 593 65.9
CANSAT11G0157 Cannabis sativa HOM05D003810 ORTHO05D004416 1.5e-216 756.5 601 66.1
GSVIVG01014785001 Vitis vinifera HOM05D003810 ORTHO05D004416 1.3e-215 753.4 599 66.3
RcHm_v2.0_Chr7g0221221 Rosa chinensis HOM05D003810 ORTHO05D004416 2.2e-215 752.7 595 64.9
CiPaw.11G208700 Carya illinoinensis HOM05D003810 ORTHO05D004416 1.9e-211 739.6 593 65.6
MD15G1441400 Malus domestica HOM05D003810 ORTHO05D004416 6.1e-210 734.6 591 65.7
Prupe.1G583500 Prunus persica HOM05D003810 ORTHO05D004416 5.1e-209 731.5 605 63.6
Haze_09895 Corylus avellana HOM05D003810 ORTHO05D004416 1.4e-206 723.4 626 62.1
Thecc.09G267400 Theobroma cacao HOM05D003810 ORTHO05D004416 2.4e-206 722.6 595 63.4
FAN04G0096 Fragaria x ananassa HOM05D003810 ORTHO05D004416 2.6e-205 719.2 593 63.2
Gohir.D07G118250 Gossypium hirsutum HOM05D003810 ORTHO05D004416 1.8e-201 706.4 595 61.7
ClCG04G003010 Citrullus lanatus HOM05D003810 ORTHO05D004416 3.3e-200 702.2 594 62.3
Rhsim04G0009500 Rhododendron simsii HOM05D003810 ORTHO05D004416 3.3e-200 702.2 601 61.4
Gorai.001G127200 Gossypium raimondii HOM05D003810 ORTHO05D004416 5.7e-200 701.4 596 61.6
Duzib150G1314 Durio zibethinus HOM05D003810 ORTHO05D004416 7.4e-200 701.0 595 62.5
CSS0024914 Camellia sinensis var. sinensis HOM05D003810 ORTHO05D004416 1.8e-198 696.4 600 61.5
Eucgr.J01409 Eucalyptus grandis HOM05D003810 ORTHO05D004416 1.3e-196 690.3 599 60.6
FAN18G3759 Fragaria x ananassa HOM05D003810 ORTHO05D004416 3.2e-195 685.6 716 52.9
FAN08G2973 Fragaria x ananassa HOM05D003810 ORTHO05D004416 4.2e-195 685.3 593 61.2
Ciclev10007802m.g Citrus clementina HOM05D003810 ORTHO05D004416 8.8e-193 677.6 595 61.2
HanXRQChr05g0160211 Helianthus annuus HOM05D003810 ORTHO05D004416 2.6e-192 676.0 595 59.2
Atru.chr2.3847 Acer truncatum HOM05D003810 ORTHO05D004416 3.3e-192 675.6 598 60.2
MSTRG.13036 Avicennia marina HOM05D003810 ORTHO05D004416 5.7e-192 674.9 600 60.2
Cc00_g20590 Coffea canephora HOM05D003810 ORTHO05D004416 3.7e-191 672.2 593 59.9
COL.COLO4_25217 Corchorus olitorius HOM05D003810 ORTHO05D004416 1.1e-190 670.6 596 60.7
Nitab4.5_0001622g0070 Nicotiana tabacum HOM05D003810 ORTHO05D004416 4.5e-189 665.2 598 59.4
FvH4_5g28910 Fragaria vesca HOM05D003810 ORTHO05D004416 5.9e-189 664.8 528 64.0
Hma1.2p1_0193F.1_g084130 Hydrangea macrophylla HOM05D003810 ORTHO05D004416 7.7e-189 664.5 622 58.0
Dinv40895 Davidia involucrata HOM05D003810 ORTHO05D004416 1.3e-188 663.7 574 62.2
PGR042G2745 Punica granatum HOM05D003810 ORTHO05D004416 3.8e-188 662.1 601 57.9
Nitab4.5_0000611g0250 Nicotiana tabacum HOM05D003810 ORTHO05D004416 1.9e-187 659.8 598 59.2
Atru.chr12.1053 Acer truncatum HOM05D003810 ORTHO05D004416 5.5e-187 658.3 589 59.8
CAN.G492.44 Capsicum annuum HOM05D003810 ORTHO05D004416 1.4e-185 653.7 595 58.3
Solyc10g005900.3 Solanum lycopersicum HOM05D003810 ORTHO05D004416 5.2e-185 651.7 598 58.4
vmacro22299 Vaccinium macrocarpon HOM05D003810 ORTHO05D004416 8.8e-185 651.0 734 51.4
Sopen10g001850 Solanum pennellii HOM05D003810 ORTHO05D004416 2.6e-184 649.4 598 58.0
Peaxi162Scf00212g00616 Petunia axillaris HOM05D003810 ORTHO05D004416 2.8e-183 646.0 593 57.5
Sc14g0003560 Simmondsia chinensis HOM05D003810 ORTHO05D004416 2.8e-183 646.0 601 57.7
PSO063G0853 Papaver somniferum HOM05D003810 ORTHO05D004416 2.7e-181 639.4 598 57.5
PSO782G5597 Papaver somniferum HOM05D003810 ORTHO05D004416 5.9e-181 638.3 598 57.2
TWI23G0485 Tripterygium wilfordii HOM05D003810 ORTHO05D004416 7.7e-181 637.9 598 57.5
Actinidia00838 Actinidia chinensis HOM05D003810 ORTHO05D004416 1.7e-180 636.7 551 62.1
ATR0751G036 Amborella trichopoda HOM05D003810 ORTHO05D004416 8.5e-180 634.4 599 56.4
Lalb_Chr06g0169751 Lupinus albus HOM05D003810 ORTHO05D004416 1.1e-179 634.0 387 83.5
Aqoxy3G00950 Aquilegia oxysepala HOM05D003810 ORTHO05D004416 4.2e-179 632.1 603 55.9
Nn2g14662 Nelumbo nucifera HOM05D003810 ORTHO05D004416 5.5e-179 631.7 607 57.0
Migut.H01729 Erythranthe guttata HOM05D003810 ORTHO05D004416 1.2e-178 630.6 591 57.2
MBI15_g00877_MAGBIO Magnolia biondii HOM05D003810 ORTHO05D004416 2.1e-178 629.8 596 57.9
AUR62017624 Chenopodium quinoa HOM05D003810 ORTHO05D004416 6.1e-178 628.2 593 58.5
Cpa.g.sc181.12 Carica papaya HOM05D003810 ORTHO05D004416 1.4e-177 627.1 564 59.4
ECA246G2898 Erigeron canadensis HOM05D003810 ORTHO05D004416 5.7e-176 621.7 594 55.4
AL1G63840 Arabidopsis lyrata HOM05D003810 ORTHO05D004416 1.1e-174 617.5 596 56.2
THA.LOC104815683 Tarenaya hassleriana HOM05D003810 ORTHO05D004416 4.1e-174 615.5 597 56.6
vmacro09609 Vaccinium macrocarpon HOM05D003810 ORTHO05D004416 5.4e-174 615.1 707 50.9
Aa31LG10G490 Aethionema arabicum HOM05D003810 ORTHO05D004416 9.1e-174 614.4 598 55.7
Sp5g24310 Schrenkiella parvula HOM05D003810 ORTHO05D004416 3.5e-173 612.5 586 56.1
Carub.0001s4426 Capsella rubella HOM05D003810 ORTHO05D004416 2.3e-172 609.8 597 54.6
Sabra07G0088100 Salix brachista HOM05D003810 ORTHO05D004416 3.8e-172 609.0 664 52.7
BcaB05g24435 Brassica carinata HOM05D003810 ORTHO05D004416 1.5e-171 607.1 586 56.5
Ah.01g013210 Amaranthus hybridus HOM05D003810 ORTHO05D004416 7.2e-171 604.7 601 56.1
Thhalv10011333m.g Eutrema salsugineum HOM05D003810 ORTHO05D004416 7.2e-171 604.7 597 54.9
DCAR_017597 Daucus carota HOM05D003810 ORTHO05D004416 1.6e-170 603.6 616 53.9
Manes.02G224100 Manihot esculenta HOM05D003810 ORTHO05D004416 4.7e-170 602.1 544 60.1
BcaC03g15064 Brassica carinata HOM05D003810 ORTHO05D004416 5.2e-169 598.6 584 56.0
C02p26210 Brassica napus HOM05D003810 ORTHO05D004416 3.4e-168 595.9 584 55.8
BolC2t08687H Brassica oleracea HOM05D003810 ORTHO05D004416 3.4e-168 595.9 584 55.8
A02p15760 Brassica napus HOM05D003810 ORTHO05D004416 4.4e-168 595.5 585 55.6
BraA02t06637Z Brassica rapa HOM05D003810 ORTHO05D004416 4.4e-168 595.5 585 55.4
CARHR045410 Cardamine hirsuta HOM05D003810 ORTHO05D004416 7.5e-168 594.7 597 54.4
AT3G61420 Arabidopsis thaliana HOM05D003810 ORTHO05D004416 3.7e-167 592.4 581 55.4
Oeu062684.4 Olea europaea HOM05D003810 ORTHO05D004416 6.3e-167 591.7 693 50.1
EL10Ac9g22878 Beta vulgaris HOM05D003810 ORTHO05D004416 8.3e-167 591.3 604 55.8
Aqoxy2G00893 Aquilegia oxysepala HOM05D003810 ORTHO05D004416 4.5e-165 585.5 603 54.2
HPP92_028601 Vanilla planifolia HOM05D003810 ORTHO05D004416 1.5e-163 580.5 593 53.8
Os08g0338200 Oryza sativa ssp. japonica HOM05D003810 ORTHO05D004416 2.5e-163 579.7 602 52.8
Lj3A773G17 Lonicera japonica HOM05D003810 ORTHO05D004416 1.6e-162 577.0 612 52.8
AL5G43720 Arabidopsis lyrata HOM05D003810 ORTHO05D004416 2.1e-162 576.6 575 55.0
Lsat_1_v5_gn_1_66020 Lactuca sativa HOM05D003810 ORTHO05D004416 2.8e-162 576.2 599 53.6
AUR62015172 Chenopodium quinoa HOM05D003810 ORTHO05D004416 1.5e-160 570.5 593 55.6
FAN14G4445 Fragaria x ananassa HOM05D003810 ORTHO05D004416 8.3e-159 564.7 597 52.6
Potri.007G107400 Populus trichocarpa HOM05D003810 ORTHO05D004416 2.7e-157 559.7 536 58.0
CDE04G2581 Ceratophyllum demersum HOM05D003810 ORTHO05D004416 4.0e-153 545.8 599 52.9
unitig_61.g26129 Utricularia gibba HOM05D003810 ORTHO05D004416 1.5e-152 543.9 589 52.0
AT1G55750 Arabidopsis thaliana HOM05D003810 ORTHO05D004416 2.1e-149 533.5 535 54.4
Dinv10375 Davidia involucrata HOM05D003810 ORTHO05D004416 1.7e-148 530.4 589 52.3
Lj3C711T10 Lonicera japonica HOM05D003810 ORTHO05D004416 3.9e-148 529.3 483 58.6
SGA_v2.0_scaffold42G15939 Striga asiatica HOM05D003810 ORTHO05D004416 1.1e-147 527.7 660 48.9
SGA_v2.0_scaffold146G36126 Striga asiatica HOM05D003810 ORTHO05D004416 8.1e-146 521.5 595 50.6
Duzib168G0397 Durio zibethinus HOM05D003810 ORTHO05D004416 9.6e-139 498.0 427 61.6
Lsat_1_v5_gn_9_33460 Lactuca sativa HOM05D003810 ORTHO05D004416 2.8e-138 496.5 587 49.7
Aqoxy7G03331 Aquilegia oxysepala HOM05D003810 ORTHO05D004416 3.1e-137 493.0 483 54.5
FvH4_6g25000 Fragaria vesca HOM05D003810 ORTHO05D004416 1.2e-133 481.1 404 60.4
TAR629G3163 Trochodendron aralioides HOM05D003810 ORTHO05D004416 3.6e-130 469.5 443 57.6
Mapoly0009s0093 Marchantia polymorpha HOM05D003810 ORTHO05D004416 9.9e-128 461.5 622 45.3
Zm00001eb172700 Zea mays HOM05D003810 ORTHO05D004416 3.5e-125 453.0 471 52.7
CiPaw.14G066900 Carya illinoinensis HOM05D003810 ORTHO05D004416 2.5e-123 446.8 342 67.8
TAR627G1185 Trochodendron aralioides HOM05D003810 ORTHO05D004416 7.3e-123 445.3 368 62.8
Prupe.5G213500 Prunus persica HOM05D003810 ORTHO05D004416 9.6e-123 444.9 466 55.2
Gohir.A07G114448 Gossypium hirsutum HOM05D003810 ORTHO05D004416 5.3e-121 439.1 355 63.4
Lj1A897G41 Lonicera japonica HOM05D003810 ORTHO05D004416 7.6e-120 435.3 398 58.5
AagrBONN_evm.TU.Sc2ySwM_117.3105 Anthoceros agrestis HOM05D003810 ORTHO05D004416 2.4e-118 430.3 601 41.9
Pp3c26_14480 Physcomitrium patens HOM05D003810 ORTHO05D004416 1.2e-117 427.9 609 40.9
BcaB07g33855 Brassica carinata HOM05D003810 ORTHO05D004416 6.7e-116 422.2 549 46.8
Prupe.5G046900 Prunus persica HOM05D003810 ORTHO05D004416 2.2e-111 407.1 462 53.5
Potri.005G061432 Populus trichocarpa HOM05D003810 ORTHO05D004416 3.0e-108 396.7 365 60.5
Lj3g0026478 Lotus japonicus HOM05D003810 ORTHO05D004416 5.1e-100 369.4 369 59.9
QL04p000617 Quercus lobata HOM05D003810 ORTHO05D004416 1.6e-98 364.4 415 51.8
Thhalv10011448m.g Eutrema salsugineum HOM05D003810 ORTHO05D004416 1.8e-97 360.9 534 43.1
CARHR219980 Cardamine hirsuta HOM05D003810 ORTHO05D004416 4.1e-97 359.8 368 54.1
FAN02G0111 Fragaria x ananassa HOM05D003810 ORTHO05D004416 6.9e-97 359.0 496 45.6
FAN02G0356 Fragaria x ananassa HOM05D003810 ORTHO05D004416 5.1e-92 342.8 435 47.1
SMO228G0023 Selaginella moellendorffii HOM05D003810 ORTHO05D004416 2.2e-90 337.4 603 37.0
BcaC08g42928 Brassica carinata HOM05D003810 ORTHO05D004416 1.1e-86 325.1 482 43.2
Lalb_Chr06g0169761 Lupinus albus HOM05D003810 ORTHO05D004416 5.5e-86 322.8 201 81.6
MD08G1246300 Malus domestica HOM05D003810 ORTHO05D004416 5.5e-86 322.8 227 70.5
FAN09G2262 Fragaria x ananassa HOM05D003810 ORTHO05D004416 5.7e-75 286.2 372 46.0
RcHm_v2.0_Chr2g0090241 Rosa chinensis HOM05D003810 ORTHO05D004416 4.8e-74 283.1 502 40.8
FAN02G2818 Fragaria x ananassa HOM05D003810 ORTHO05D004416 5.3e-73 279.6 317 47.9
FAN05G0299 Fragaria x ananassa HOM05D003810 ORTHO05D010162 2.3e-68 264.2 270 53.0
Gohir.A07G114432 Gossypium hirsutum HOM05D003810 ORTHO05D004416 2.6e-67 260.8 214 61.7
Lj1A897G42 Lonicera japonica HOM05D003810 ORTHO05D004416 7.5e-67 259.2 194 69.1
BolC6t35297H Brassica oleracea HOM05D003810 ORTHO05D004416 2.7e-64 250.8 315 47.3
Potri.005G061366 Populus trichocarpa HOM05D003810 ORTHO05D004416 7.2e-62 242.7 206 61.2
TAR627G1127 Trochodendron aralioides HOM05D003810 ORTHO05D004416 2.2e-58 231.1 184 62.5
CiPaw.14G066700 Carya illinoinensis HOM05D003810 ORTHO05D004416 1.6e-56 224.9 211 58.3
SHI21694 Sapria himalayana HOM05D003810 ORTHO05D004416 1.0e-52 212.2 181 56.4
MD08G1246400 Malus domestica HOM05D003810 ORTHO05D004416 4.4e-51 206.8 165 63.6
Hma1.2p1_2995F.1_g331440 Hydrangea macrophylla HOM05D003810 ORTHO05D004416 4.9e-50 203.4 362 39.2
CBR_g28523 Chara braunii HOM05D000019 ORTHO05D000002 1.0e-47 195.7 223 45.3
Rhsim05G0134800 Rhododendron simsii HOM05D003492 ORTHO05D005115 1.5e-43 181.8 272 43.0
TPR.G30194 Trifolium pratense HOM05D003810 ORTHO05D004416 2.6e-43 181.0 188 56.4
CAN.G306.2 Capsicum annuum HOM05D003810 ORTHO05D004416 5.8e-43 179.9 174 55.7
CAN.G306.3 Capsicum annuum HOM05D003810 ORTHO05D004416 5.8e-43 179.9 174 55.7
Hma1.2p1_2995F.1_g331430 Hydrangea macrophylla HOM05D003810 ORTHO05D004416 7.5e-43 179.5 197 52.3
HPP92_016056 Vanilla planifolia HOM05D003810 ORTHO05D004416 8.1e-37 159.5 117 66.7
Hund17709 Selenicereus undatus HOM05D003810 ORTHO05D004416 4.0e-36 157.1 332 33.7
ECA233G1945 Erigeron canadensis HOM05D000449 ORTHO05D003939 7.5e-35 152.9 234 40.6
Actinidia03659 Actinidia chinensis HOM05D003810 ORTHO05D004416 1.2e-32 145.6 142 58.5
QL12p013194 Quercus lobata HOM05D003810 ORTHO05D004416 8.6e-31 139.4 181 47.5
Oeu005536.2 Olea europaea HOM05D003810 ORTHO05D004416 1.8e-28 131.7 164 48.2
SMO031G0001 Selaginella moellendorffii HOM05D003810 ORTHO05D004416 7.1e-25 119.8 122 47.5
SHI21692 Sapria himalayana HOM05D003810 ORTHO05D004416 1.8e-20 105.1 104 55.8
MCO14G434 Micromonas commoda HOM05D003810 ORTHO05D004416 1.2e-19 102.4 745 24.0
CAN.G790.44 Capsicum annuum HOM05D000872 ORTHO05D000777 4.4e-19 100.5 194 36.1
Sabra05G0051600 Salix brachista HOM05D003810 ORTHO05D004416 1.3e-18 99.0 200 39.5
TPR.G30768 Trifolium pratense HOM05D003810 ORTHO05D004416 8.4e-18 96.3 62 77.4
SGA_v2.0_scaffold126G33829 Striga asiatica HOM05D003810 ORTHO05D004416 3.2e-17 94.4 181 35.9
CAN.G312.5 Capsicum annuum HOM05D003810 ORTHO05D000001 5.4e-17 93.6 73 63.0
TAR629G2180 Trochodendron aralioides HOM05D003810 ORTHO05D004416 3.5e-16 90.9 65 66.2
CAN.G1328.7 Capsicum annuum HOM05D003810 ORTHO05D004416 4.6e-16 90.5 76 59.2
CAN.G289.45 Capsicum annuum HOM05D002177 ORTHO05D004416 4.6e-16 90.5 80 53.8
CDE07G1690 Ceratophyllum demersum HOM05D003810 ORTHO05D004416 7.8e-16 89.7 127 44.1
PRCOL_00004489 Prasinoderma coloniale HOM05D003810 ORTHO05D004416 2.3e-15 88.2 535 24.5
SalBow3G3831 Salvia bowleyana HOM05D003810 ORTHO05D004416 2.3e-15 88.2 132 40.9
CAN.G1057.19 Capsicum annuum HOM05D000222 ORTHO05D004416 1.1e-14 85.9 77 54.5
SHI21696 Sapria himalayana HOM05D003810 ORTHO05D004416 2.5e-14 84.7 108 47.2
MD08G1246200 Malus domestica HOM05D003810 ORTHO05D004416 8.1e-13 79.7 138 40.6
ClCG09G022970 Citrullus lanatus HOM05D003810 ORTHO05D004416 1.2e-11 75.9 67 55.2
Hund08475 Selenicereus undatus HOM05D000185 ORTHO05D000105 5.8e-11 73.6 58 60.3
CAN.G11.19 Capsicum annuum HOM05D003810 ORTHO05D004416 7.6e-11 73.2 56 60.7
SalBow3G0229 Salvia bowleyana HOM05D003810 ORTHO05D004416 6.4e-10 70.1 105 41.9
CAN.G479.68 Capsicum annuum HOM05D000222 ORTHO05D004387 1.4e-09 68.9 52 61.5
Hund17711 Selenicereus undatus HOM05D003810 ORTHO05D004416 4.6e-08 63.9 50 66.0
CAN.G523.5 Capsicum annuum HOM05D000222 ORTHO05D012343 1.3e-07 62.4 61 52.5
CAN.G1077.9 Capsicum annuum HOM05D000222 ORTHO05D012343 1.7e-07 62.0 146 31.5
Lsat_1_v5_gn_2_75840 Lactuca sativa HOM05D001134 ORTHO05D004416 5.1e-07 60.5 96 38.5
SEGI_40538 Sequoiadendron giganteum HOM05D003810 ORTHO05D004416 6.6e-07 60.1 48 62.5
Cre10.g466550 Chlamydomonas reinhardtii HOM05D003810 ORTHO05D004416 1.1e-06 59.3 136 30.9
Nitab4.5_0001303g0160 Nicotiana tabacum HOM05D003810 ORTHO05D004416 1.1e-06 59.3 45 62.2
MD08G1246500 Malus domestica HOM05D003810 ORTHO05D004416 7.4e-06 56.6 47 55.3


User provided reference genes

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