Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0016728 Lotus japonicus HOM05D006356 ORTHO05D007903 3.2e-306 1054.3 548 100.0
LjContig00357g0007551 Lotus japonicus HOM05D006356 ORTHO05D007903 9.2e-67 258.8 143 96.5
Medtr1g115300 Medicago truncatula HOM05D006356 ORTHO05D007903 2.5e-56 224.2 143 85.3
VMungo0720G2582 Vigna mungo HOM05D006356 ORTHO05D007903 5.6e-56 223.0 292 51.0
Phvul.007G011700 Phaseolus vulgaris HOM05D006356 ORTHO05D007903 6.2e-55 219.5 293 50.5
Glyma.10G289800 Glycine max HOM05D006356 ORTHO05D007903 5.2e-54 216.5 293 49.8
Psat2g006960 Pisum sativum HOM05D006356 ORTHO05D007903 2.6e-53 214.2 143 80.4
Lalb_Chr21g0307391 Lupinus albus HOM05D006356 ORTHO05D007903 7.0e-51 206.1 287 49.1
arahy.Tifrunner.gnm1.ann1.C821YF Arachis hypogaea HOM05D006356 ORTHO05D007903 6.0e-50 203.0 293 46.8
TPR.G13985 Trifolium pratense HOM05D006356 ORTHO05D007903 1.6e-47 194.9 115 88.7
Ca_11290_v3 Cicer arietinum L. HOM05D006356 ORTHO05D007903 5.2e-46 189.9 138 75.4
Duzib106G0492 Durio zibethinus HOM05D006356 ORTHO05D007903 5.2e-46 189.9 293 45.1
COL.COLO4_14974 Corchorus olitorius HOM05D006356 ORTHO05D007903 2.2e-44 184.5 289 43.6
Haze_17035 Corylus avellana HOM05D006356 ORTHO05D007903 1.2e-42 178.7 289 43.3
Thecc.10G046600 Theobroma cacao HOM05D006356 ORTHO05D007903 1.0e-41 175.6 290 43.1
Cfa001508 Carpinus fangiana HOM05D006356 ORTHO05D007903 2.3e-41 174.5 289 42.6
Atru.chr12.503 Acer truncatum HOM05D006356 ORTHO05D007903 3.9e-41 173.7 139 67.6
Gohir.A10G215900 Gossypium hirsutum HOM05D006356 ORTHO05D007903 5.1e-41 173.3 289 43.3
Gohir.D10G224900 Gossypium hirsutum HOM05D006356 ORTHO05D007903 5.1e-41 173.3 291 42.6
FAN01G2014 Fragaria x ananassa HOM05D006356 ORTHO05D007903 1.1e-40 172.2 289 42.6
FAN06G1346 Fragaria x ananassa HOM05D006356 ORTHO05D007903 1.1e-40 172.2 289 42.6
FvH4_7g21920 Fragaria vesca HOM05D006356 ORTHO05D007903 1.9e-40 171.4 289 42.2
FAN06G1693 Fragaria x ananassa HOM05D006356 ORTHO05D007903 2.5e-40 171.0 289 42.2
Potri.010G208400 Populus trichocarpa HOM05D006356 ORTHO05D007903 2.5e-40 171.0 289 41.9
QL08p059009 Quercus lobata HOM05D006356 ORTHO05D007903 2.5e-40 171.0 288 42.7
FAN03G2412 Fragaria x ananassa HOM05D006356 ORTHO05D007903 3.3e-40 170.6 289 42.2
FAN10G4053 Fragaria x ananassa HOM05D006356 ORTHO05D007903 3.3e-40 170.6 289 42.2
Cpa.g.sc1.372 Carica papaya HOM05D006356 ORTHO05D007903 7.3e-40 169.5 288 41.3
Manes.07G113200 Manihot esculenta HOM05D006356 ORTHO05D007903 7.3e-40 169.5 139 64.7
Sabra08G0037700 Salix brachista HOM05D006356 ORTHO05D007903 9.5e-40 169.1 288 41.7
ClCG09G020060 Citrullus lanatus HOM05D006356 ORTHO05D007903 4.0e-38 163.7 283 41.3
Actinidia02967 Actinidia chinensis HOM05D006356 ORTHO05D007903 6.8e-38 162.9 457 29.8
Gorai.011G255900 Gossypium raimondii HOM05D006356 ORTHO05D007903 6.8e-38 162.9 160 59.4
Potri.008G052400 Populus trichocarpa HOM05D006356 ORTHO05D007903 1.2e-37 162.2 289 41.5
Lj8C87G2 Lonicera japonica HOM05D006356 ORTHO05D007903 2.6e-37 161.0 290 42.1
Ciclev10030528m.g Citrus clementina HOM05D006356 ORTHO05D007903 7.6e-37 159.5 137 63.5
Sed0005812 Sechium edule HOM05D006356 ORTHO05D007903 7.6e-37 159.5 135 65.9
CSS0015977 Camellia sinensis var. sinensis HOM05D006356 ORTHO05D007903 9.9e-37 159.1 289 39.8
Nitab4.5_0006342g0010 Nicotiana tabacum HOM05D006356 ORTHO05D007903 9.9e-37 159.1 289 40.5
Peaxi162Scf00015g01616 Petunia axillaris HOM05D006356 ORTHO05D007903 9.9e-37 159.1 289 39.8
PGSC0003DMG400023520 Solanum tuberosum HOM05D006356 ORTHO05D007903 2.9e-36 157.5 289 40.1
Actinidia07718 Actinidia chinensis HOM05D006356 ORTHO05D007903 3.8e-36 157.1 289 39.4
CANSAT56G2020 Cannabis sativa HOM05D006356 ORTHO05D007903 3.8e-36 157.1 288 39.9
vmacro07156 Vaccinium macrocarpon HOM05D006356 ORTHO05D007903 6.4e-36 156.4 290 38.6
PGR044G1537 Punica granatum HOM05D006356 ORTHO05D007903 8.4e-36 156.0 289 39.1
Atru.BG.253.p Acer truncatum HOM05D006356 ORTHO05D007903 1.1e-35 155.6 128 66.4
DCAR_027666 Daucus carota HOM05D006356 ORTHO05D007903 1.4e-35 155.2 289 39.8
Sopen05g033110 Solanum pennellii HOM05D006356 ORTHO05D007903 1.9e-35 154.8 289 39.1
CsaV3_5G026400 Cucumis sativus L. HOM05D006356 ORTHO05D007903 5.4e-35 153.3 283 38.9
Solyc05g054630.4 Solanum lycopersicum HOM05D006356 ORTHO05D007903 7.1e-35 152.9 289 38.8
MELO3C025450.2 Cucumis melo HOM05D006356 ORTHO05D007903 1.2e-34 152.1 282 38.7
Nitab4.5_0001831g0090 Nicotiana tabacum HOM05D006356 ORTHO05D007903 2.1e-34 151.4 287 39.4
Aa31sc144G30 Aethionema arabicum HOM05D006356 ORTHO05D007903 3.5e-34 150.6 138 57.2
Rhsim09G0107200 Rhododendron simsii HOM05D006356 ORTHO05D007903 3.5e-34 150.6 289 38.8
TAR369G0783 Trochodendron aralioides HOM05D006356 ORTHO05D007903 6.0e-34 149.8 290 39.3
TWI38G0752 Tripterygium wilfordii HOM05D006356 ORTHO05D007903 7.8e-34 149.4 290 39.0
MBI14_g24317_MAGBIO Magnolia biondii HOM05D006356 ORTHO05D007903 1.0e-33 149.1 137 62.8
Hma1.2p1_0533F.1_g173650 Hydrangea macrophylla HOM05D006356 ORTHO05D007903 2.3e-33 147.9 289 37.4
Hma1.2p1_0533F.1_g173660 Hydrangea macrophylla HOM05D006356 ORTHO05D007903 2.3e-33 147.9 289 37.4
Oeu016021.3 Olea europaea HOM05D006356 ORTHO05D007903 2.3e-33 147.9 136 60.3
EL10Ac2g03426 Beta vulgaris HOM05D006356 ORTHO05D007903 5.1e-33 146.7 289 38.1
PSO675G9381 Papaver somniferum HOM05D006356 ORTHO05D007903 8.6e-33 146.0 142 57.0
CAN.G1013.4 Capsicum annuum HOM05D006356 ORTHO05D007903 1.5e-32 145.2 289 37.0
Thhalv10012453m.g Eutrema salsugineum HOM05D006356 ORTHO05D007903 1.5e-32 145.2 284 38.4
PSO541G4186 Papaver somniferum HOM05D006356 ORTHO05D007903 1.5e-32 145.2 142 56.3
RcHm_v2.0_Chr1g0366221 Rosa chinensis HOM05D006356 ORTHO05D007903 1.5e-32 145.2 289 39.4
Eucgr.J00045 Eucalyptus grandis HOM05D006356 ORTHO05D007903 1.9e-32 144.8 110 68.2
BcaC04g24267 Brassica carinata HOM05D006356 ORTHO05D007903 2.5e-32 144.4 290 37.2
Aqoxy4G02989 Aquilegia oxysepala HOM05D006356 ORTHO05D007903 3.3e-32 144.1 142 57.0
GSVIVG01016590001 Vitis vinifera HOM05D006356 ORTHO05D007903 5.6e-32 143.3 289 38.8
CARHR199760 Cardamine hirsuta HOM05D006356 ORTHO05D007903 9.6e-32 142.5 283 38.5
Sp6g30340 Schrenkiella parvula HOM05D006356 ORTHO05D007903 1.2e-31 142.1 284 38.0
A10p24610 Brassica napus HOM05D006356 ORTHO05D007903 1.6e-31 141.7 289 37.4
C09p63420 Brassica napus HOM05D006356 ORTHO05D007903 1.6e-31 141.7 290 36.9
BraA10t44524Z Brassica rapa HOM05D006356 ORTHO05D007903 1.6e-31 141.7 289 37.4
BolC9t59188H Brassica oleracea HOM05D006356 ORTHO05D007903 2.1e-31 141.4 290 36.6
AL6G24290 Arabidopsis lyrata HOM05D006356 ORTHO05D007903 2.8e-31 141.0 290 36.9
MD01G1123800 Malus domestica HOM05D006356 ORTHO05D007903 2.8e-31 141.0 110 66.4
Ah.16g107390 Amaranthus hybridus HOM05D006356 ORTHO05D007903 3.6e-31 140.6 288 35.8
AT5G13680 Arabidopsis thaliana HOM05D006356 ORTHO05D007903 3.6e-31 140.6 176 47.7
HanXRQChr08g0220321 Helianthus annuus HOM05D006356 ORTHO05D007903 3.6e-31 140.6 289 37.0
Sc20g0002610 Simmondsia chinensis HOM05D006356 ORTHO05D007903 3.6e-31 140.6 289 37.4
ECA233G4627 Erigeron canadensis HOM05D006356 ORTHO05D007903 6.2e-31 139.8 290 37.6
Hund20019 Selenicereus undatus HOM05D006356 ORTHO05D007903 8.1e-31 139.4 295 38.0
Nn2g12928 Nelumbo nucifera HOM05D006356 ORTHO05D007903 1.4e-30 138.7 296 38.2
Carub.0006s1184 Capsella rubella HOM05D006356 ORTHO05D007903 1.8e-30 138.3 288 37.5
THA.LOC104799353 Tarenaya hassleriana HOM05D006356 ORTHO05D007903 2.4e-30 137.9 136 56.6
AUR62040952 Chenopodium quinoa HOM05D006356 ORTHO05D007903 3.1e-30 137.5 289 36.0
Lsat_1_v5_gn_8_16481 Lactuca sativa HOM05D006356 ORTHO05D007903 3.1e-30 137.5 289 37.0
MD07G1193500 Malus domestica HOM05D006356 ORTHO05D007903 5.2e-30 136.7 288 36.8
Prupe.2G231100 Prunus persica HOM05D006356 ORTHO05D007903 2.0e-29 134.8 289 37.0
Os07g0563700 Oryza sativa ssp. japonica HOM05D006356 ORTHO05D007903 2.6e-29 134.4 141 53.9
AUR62038375 Chenopodium quinoa HOM05D006356 ORTHO05D007903 4.9e-28 130.2 135 52.6
Zm00001eb082380 Zea mays HOM05D006356 ORTHO05D007903 1.2e-26 125.6 138 50.0
SGA_v2.0_scaffold204G41568 Striga asiatica HOM05D006356 ORTHO05D007903 4.6e-26 123.6 137 52.6
Cc02_g08190 Coffea canephora HOM05D006356 ORTHO05D007903 7.8e-26 122.9 290 35.5
Migut.H00419 Erythranthe guttata HOM05D006356 ORTHO05D007903 7.8e-26 122.9 278 36.3
arahy.Tifrunner.gnm1.ann1.1A0WRJ Arachis hypogaea HOM05D006356 ORTHO05D007903 4.8e-23 113.6 82 65.9
CDE04G3644 Ceratophyllum demersum HOM05D006356 ORTHO05D007903 8.1e-23 112.8 120 53.3
Dinv31432 Davidia involucrata HOM05D006356 ORTHO05D007903 1.9e-19 101.7 75 64.0
ATR0559G370 Amborella trichopoda HOM05D006356 ORTHO05D007903 1.6e-18 98.6 110 47.3
HPP92_012583 Vanilla planifolia HOM05D006356 ORTHO05D007903 1.6e-18 98.6 107 52.3
Cpa.g.sc1.373 Carica papaya HOM05D006356 ORTHO05D007903 1.3e-17 95.5 81 50.6
unitig_736.g22669 Utricularia gibba HOM05D006356 ORTHO05D007903 8.7e-17 92.8 159 39.0
AUR62038374 Chenopodium quinoa HOM05D006356 ORTHO05D007903 3.3e-16 90.9 77 57.1
CiPaw.01G284000 Carya illinoinensis HOM05D006356 ORTHO05D007903 2.1e-15 88.2 68 58.8
Hma1.2p1_0529F.1_g173120 Hydrangea macrophylla HOM05D006356 ORTHO05D007903 1.4e-11 75.5 65 64.6
unitig_736.g22670 Utricularia gibba HOM05D006356 ORTHO05D007903 3.2e-11 74.3 95 41.1
SEGI_10512 Sequoiadendron giganteum HOM05D006356 ORTHO05D007903 1.6e-10 72.0 150 38.7
AagrBONN_evm.TU.Sc2ySwM_362.1673 Anthoceros agrestis HOM05D006356 ORTHO05D007903 4.3e-08 63.9 98 38.8
Mapoly0015s0194 Marchantia polymorpha HOM05D006356 ORTHO05D007903 4.3e-08 63.9 105 41.9
SEGI_26197 Sequoiadendron giganteum HOM05D006356 ORTHO05D007903 3.7e-07 60.8 95 37.9
Lj6g0000863 Lotus japonicus HOM05D000141 ORTHO05D001968 3.1e-06 57.8 116 42.2


User provided reference genes

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