Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0012001 Lotus japonicus HOM05D001058 ORTHO05D237129 7.4e-184 647.1 338 100.0
Lj3g0010411 Lotus japonicus HOM05D003724 ORTHO05D004367 7.2e-22 109.0 221 33.5
Lj5g0005260 Lotus japonicus HOM05D001389 ORTHO05D036508 1.7e-18 97.8 235 28.9
Manes.07G032400 Manihot esculenta HOM05D001058 ORTHO05D000911 5.4e-09 66.2 164 31.1
AUR62020974 Chenopodium quinoa HOM05D001389 ORTHO05D004821 7.0e-09 65.9 141 32.6
Manes.07G032300 Manihot esculenta HOM05D001058 ORTHO05D000911 1.2e-08 65.1 162 29.6
Cc02_g21390 Coffea canephora HOM05D001058 ORTHO05D000911 2.0e-08 64.3 147 31.3
TWI14G0266 Tripterygium wilfordii HOM05D001058 ORTHO05D000911 2.7e-08 63.9 159 28.3
AUR62043198 Chenopodium quinoa HOM05D001389 ORTHO05D004821 4.5e-08 63.2 141 30.5
RcHm_v2.0_Chr6g0271791 Rosa chinensis HOM05D001058 ORTHO05D000911 4.5e-08 63.2 146 31.5
RcHm_v2.0_Chr5g0011711 Rosa chinensis HOM05D001058 ORTHO05D000911 7.8e-08 62.4 147 25.2
Duzib248G1630 Durio zibethinus HOM05D001058 ORTHO05D000911 1.3e-07 61.6 152 27.6
HPP92_022507 Vanilla planifolia HOM05D001058 ORTHO05D000911 1.3e-07 61.6 208 25.5
CiPaw.05G034600 Carya illinoinensis HOM05D001058 ORTHO05D000911 2.3e-07 60.8 144 31.2
AUR62043201 Chenopodium quinoa HOM05D001389 ORTHO05D004821 2.3e-07 60.8 171 28.7
DCAR_021863 Daucus carota HOM05D001058 ORTHO05D000911 2.3e-07 60.8 148 31.8
PSO447G0341 Papaver somniferum HOM05D001058 ORTHO05D000911 2.3e-07 60.8 144 29.2
PSO675G3833 Papaver somniferum HOM05D001389 ORTHO05D004821 2.3e-07 60.8 139 30.2
Oeu032115.1 Olea europaea HOM05D001058 ORTHO05D000911 2.9e-07 60.5 173 29.5
Hund11020 Selenicereus undatus HOM05D001058 ORTHO05D000911 3.8e-07 60.1 154 27.3
TWI14G0711 Tripterygium wilfordii HOM05D001058 ORTHO05D000911 3.8e-07 60.1 157 27.4
CiPaw.06G154300 Carya illinoinensis HOM05D001058 ORTHO05D000911 6.6e-07 59.3 172 27.3
Migut.B00600 Erythranthe guttata HOM05D001058 ORTHO05D000911 6.6e-07 59.3 160 30.0
FvH4_5g28030 Fragaria vesca HOM05D001058 ORTHO05D000911 6.6e-07 59.3 148 29.1
RcHm_v2.0_Chr6g0271771 Rosa chinensis HOM05D001058 ORTHO05D000911 6.6e-07 59.3 176 29.5
ATR1096G156 Amborella trichopoda HOM05D001389 ORTHO05D004821 8.6e-07 58.9 145 31.7
FAN04G0236 Fragaria x ananassa HOM05D001058 ORTHO05D000911 8.6e-07 58.9 148 29.1
Gohir.D06G182366 Gossypium hirsutum HOM05D001389 ORTHO05D004821 8.6e-07 58.9 141 31.9
Gorai.010G213500 Gossypium raimondii HOM05D001389 ORTHO05D004821 8.6e-07 58.9 141 31.9
PGSC0003DMG400001723 Solanum tuberosum HOM05D001058 ORTHO05D000911 8.6e-07 58.9 146 27.4
COL.COLO4_06030 Corchorus olitorius HOM05D001389 ORTHO05D004821 1.1e-06 58.5 141 28.4
MELO3C017623.2 Cucumis melo HOM05D001058 ORTHO05D000911 1.1e-06 58.5 167 28.7
PGR042G3174 Punica granatum HOM05D001389 ORTHO05D004821 1.1e-06 58.5 142 27.5
GSVIVG01015724001 Vitis vinifera HOM05D001058 ORTHO05D000911 1.1e-06 58.5 167 27.5
MSTRG.16589 Avicennia marina HOM05D001058 ORTHO05D000911 1.5e-06 58.2 155 27.7
ClCG07G017230 Citrullus lanatus HOM05D001058 ORTHO05D000911 1.5e-06 58.2 167 28.1
Nn6g33728 Nelumbo nucifera HOM05D001058 ORTHO05D000911 1.5e-06 58.2 179 25.7
Nitab4.5_0007904g0030 Nicotiana tabacum HOM05D001058 ORTHO05D000911 1.5e-06 58.2 146 26.0
QL11p021473 Quercus lobata HOM05D001058 ORTHO05D000911 1.5e-06 58.2 146 29.5
Thecc.10G138400 Theobroma cacao HOM05D001389 ORTHO05D004821 1.5e-06 58.2 142 28.2
Gorai.010G213400 Gossypium raimondii HOM05D001389 ORTHO05D004821 1.9e-06 57.8 141 31.2
Lalb_Chr01g0021841 Lupinus albus HOM05D001058 ORTHO05D000911 1.9e-06 57.8 162 27.8
Potri.017G052600 Populus trichocarpa HOM05D001058 ORTHO05D000911 1.9e-06 57.8 229 25.8
SEGI_34923 Sequoiadendron giganteum HOM05D001058 ORTHO05D000911 1.9e-06 57.8 184 27.2
Thecc.02G137000 Theobroma cacao HOM05D001058 ORTHO05D000911 1.9e-06 57.8 185 26.5
Duzib052G0723 Durio zibethinus HOM05D001058 ORTHO05D000911 2.5e-06 57.4 155 27.1
Thhalv10004433m.g Eutrema salsugineum HOM05D001058 ORTHO05D000911 2.5e-06 57.4 153 26.8
Gohir.D06G182200 Gossypium hirsutum HOM05D001389 ORTHO05D004821 2.5e-06 57.4 141 31.2
Pp3c24_11630 Physcomitrium patens HOM05D001058 ORTHO05D000911 2.5e-06 57.4 151 28.5
Potri.017G053100 Populus trichocarpa HOM05D001058 ORTHO05D000911 2.5e-06 57.4 176 25.0
Solyc01g088710.3 Solanum lycopersicum HOM05D001058 ORTHO05D000911 2.5e-06 57.4 146 26.7
Sopen01g035550 Solanum pennellii HOM05D001058 ORTHO05D000911 2.5e-06 57.4 146 26.7
unitig_22.g5407 Utricularia gibba HOM05D001058 ORTHO05D000911 2.5e-06 57.4 151 27.8
EL10Ac1g00729 Beta vulgaris HOM05D001058 ORTHO05D000911 3.3e-06 57.0 151 28.5
Cpa.g.sc13.214 Carica papaya HOM05D001058 ORTHO05D000911 3.3e-06 57.0 143 28.7
CiPaw.06G154000 Carya illinoinensis HOM05D001058 ORTHO05D000911 3.3e-06 57.0 125 32.8
Dinv34519 Davidia involucrata HOM05D001058 ORTHO05D000911 3.3e-06 57.0 169 27.8
FAN18G1021 Fragaria x ananassa HOM05D001058 ORTHO05D000911 3.3e-06 57.0 148 28.4
Gohir.D01G010500 Gossypium hirsutum HOM05D001058 ORTHO05D000911 3.3e-06 57.0 154 27.3
Gohir.D06G182333 Gossypium hirsutum HOM05D001389 ORTHO05D004821 3.3e-06 57.0 141 30.5
Nitab4.5_0000563g0050 Nicotiana tabacum HOM05D001058 ORTHO05D000911 3.3e-06 57.0 168 23.8
TAR625G1029 Trochodendron aralioides HOM05D001058 ORTHO05D000911 3.3e-06 57.0 146 29.5
Carub.0001s0005 Capsella rubella HOM05D001058 ORTHO05D000911 4.3e-06 56.6 154 27.3
AUR62020971 Chenopodium quinoa HOM05D001389 ORTHO05D004821 4.3e-06 56.6 219 25.1
COL.COLO4_37297 Corchorus olitorius HOM05D001058 ORTHO05D000911 4.3e-06 56.6 162 27.8
CsaV3_4G004430 Cucumis sativus L. HOM05D001058 ORTHO05D000911 4.3e-06 56.6 165 28.5
Migut.B00602 Erythranthe guttata HOM05D001058 ORTHO05D000911 4.3e-06 56.6 169 29.6
Eucgr.A02943 Eucalyptus grandis HOM05D001058 ORTHO05D000911 4.3e-06 56.6 143 28.7
Gohir.A06G172806 Gossypium hirsutum HOM05D001389 ORTHO05D004821 4.3e-06 56.6 141 30.5
Hma1.2p1_1083F.1_g255220 Hydrangea macrophylla HOM05D001058 ORTHO05D000911 4.3e-06 56.6 168 26.8
Nn5g30084 Nelumbo nucifera HOM05D001058 ORTHO05D000911 4.3e-06 56.6 146 29.5
SalBow5G0730 Salvia bowleyana HOM05D001058 ORTHO05D000911 4.3e-06 56.6 186 28.0
Cfa011033 Carpinus fangiana HOM05D001058 ORTHO05D000911 5.6e-06 56.2 146 27.4
Sp1g00070 Schrenkiella parvula HOM05D001058 ORTHO05D000911 5.6e-06 56.2 171 25.7
AT1G02170 Arabidopsis thaliana HOM05D001058 ORTHO05D000911 7.3e-06 55.8 154 27.3
CARHR000150 Cardamine hirsuta HOM05D001058 ORTHO05D000911 7.3e-06 55.8 154 27.3
Dinv09025 Davidia involucrata HOM05D001058 ORTHO05D000911 7.3e-06 55.8 188 23.9
Gohir.A01G014800 Gossypium hirsutum HOM05D001058 ORTHO05D000911 7.3e-06 55.8 151 27.2
Gohir.D06G182000 Gossypium hirsutum HOM05D001389 ORTHO05D004821 7.3e-06 55.8 141 29.8
Potri.014G052500 Populus trichocarpa HOM05D001058 ORTHO05D000911 7.3e-06 55.8 162 26.5
Sabra12G0081700 Salix brachista HOM05D001058 ORTHO05D000911 7.3e-06 55.8 159 25.8
SalBow5G1316 Salvia bowleyana HOM05D001058 ORTHO05D000911 7.3e-06 55.8 151 27.8
Thecc.03G144500 Theobroma cacao HOM05D001058 ORTHO05D000911 7.3e-06 55.8 153 28.1
unitig_8.g3846 Utricularia gibba HOM05D001058 ORTHO05D000911 7.3e-06 55.8 150 26.7
AT1G79310 Arabidopsis thaliana HOM05D001389 ORTHO05D002892 9.5e-06 55.5 175 26.3
CiPaw.08G043300 Carya illinoinensis HOM05D001058 ORTHO05D000911 9.5e-06 55.5 167 27.5
COL.COLO4_07840 Corchorus olitorius HOM05D001058 ORTHO05D000911 9.5e-06 55.5 150 28.7
Duzib052G0884 Durio zibethinus HOM05D001058 ORTHO05D000911 9.5e-06 55.5 155 27.1
Migut.N01073 Erythranthe guttata HOM05D001058 ORTHO05D000911 9.5e-06 55.5 155 28.4
SGA_v2.0_scaffold123G33491 Striga asiatica HOM05D001389 ORTHO05D004821 9.5e-06 55.5 138 27.5


User provided reference genes

Program Settings