Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0010111 Lotus japonicus HOM05D002281 ORTHO05D006774 0.0e+00 1633.6 894 100.0
Glyma.20G221100 Glycine max HOM05D002281 ORTHO05D006774 0.0e+00 1405.2 894 85.2
Ca_09982_v3 Cicer arietinum L. HOM05D002281 ORTHO05D006774 0.0e+00 1397.5 873 84.1
Glyma.10G168600 Glycine max HOM05D002281 ORTHO05D006774 0.0e+00 1377.1 894 83.7
Psat6g141840 Pisum sativum HOM05D002281 ORTHO05D006774 0.0e+00 1359.4 871 81.5
Medtr1g079525 Medicago truncatula HOM05D002281 ORTHO05D006774 0.0e+00 1355.5 870 81.5
VMungo0720G2591 Vigna mungo HOM05D002281 ORTHO05D006774 0.0e+00 1352.8 894 80.0
Phvul.L002432 Phaseolus vulgaris HOM05D002281 ORTHO05D006774 0.0e+00 1351.7 894 80.0
arahy.Tifrunner.gnm1.ann1.BY82ZN Arachis hypogaea HOM05D002281 ORTHO05D006774 0.0e+00 1320.4 907 78.7
Lalb_Chr21g0311311 Lupinus albus HOM05D002281 ORTHO05D006774 0.0e+00 1317.4 837 81.8
TPR.G31600 Trifolium pratense HOM05D002281 ORTHO05D006774 0.0e+00 1303.1 872 78.8
GSVIVG01026351001 Vitis vinifera HOM05D002281 ORTHO05D006774 0.0e+00 1274.6 878 74.3
Manes.09G145600 Manihot esculenta HOM05D002281 ORTHO05D006774 0.0e+00 1272.3 826 79.1
COL.COLO4_38180 Corchorus olitorius HOM05D002281 ORTHO05D006774 0.0e+00 1253.0 820 78.3
CsaV3_1G044940 Cucumis sativus L. HOM05D002281 ORTHO05D006774 0.0e+00 1252.7 869 77.0
Sed0014107 Sechium edule HOM05D002281 ORTHO05D006774 0.0e+00 1252.7 864 77.2
MELO3C010108.2 Cucumis melo HOM05D002281 ORTHO05D006774 0.0e+00 1250.7 854 77.2
RcHm_v2.0_Chr3g0448921 Rosa chinensis HOM05D002281 ORTHO05D006774 0.0e+00 1234.9 889 73.7
Cfa006305 Carpinus fangiana HOM05D002281 ORTHO05D006774 0.0e+00 1234.2 877 74.9
FvH4_6g01350 Fragaria vesca HOM05D002281 ORTHO05D006774 0.0e+00 1234.2 887 74.1
Nn3g19861 Nelumbo nucifera HOM05D002281 ORTHO05D006774 0.0e+00 1234.2 825 76.6
Thecc.05G264900 Theobroma cacao HOM05D002281 ORTHO05D006774 0.0e+00 1228.0 832 76.3
MD04G1234900 Malus domestica HOM05D002281 ORTHO05D006774 0.0e+00 1226.1 870 76.9
FAN09G1447 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 1224.9 876 74.5
FAN05G1274 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 1223.8 886 73.8
Eucgr.B02168 Eucalyptus grandis HOM05D002281 ORTHO05D006774 0.0e+00 1223.4 824 77.8
FAN05G1240 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 1222.6 879 74.3
Oeu001246.1 Olea europaea HOM05D002281 ORTHO05D006774 0.0e+00 1221.5 865 73.4
FAN14G3852 Fragaria x ananassa HOM05D002281 ORTHO05D006774 0.0e+00 1219.1 891 73.2
TWI60G1049 Tripterygium wilfordii HOM05D002281 ORTHO05D006774 0.0e+00 1217.6 823 75.6
Gohir.A13G103100 Gossypium hirsutum HOM05D002281 ORTHO05D006774 0.0e+00 1217.2 864 74.4
Actinidia06827 Actinidia chinensis HOM05D002281 ORTHO05D006774 0.0e+00 1216.4 869 73.4
CSS0040843 Camellia sinensis var. sinensis HOM05D002281 ORTHO05D006774 0.0e+00 1216.1 870 72.8
arahy.Tifrunner.gnm1.ann1.76MSW2 Arachis hypogaea HOM05D002281 ORTHO05D006774 0.0e+00 1215.3 905 74.5
Ciclev10023441m.g Citrus clementina HOM05D002281 ORTHO05D006774 0.0e+00 1215.3 832 76.0
FAN14G5004 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 1214.9 893 72.8
Gohir.D13G106200 Gossypium hirsutum HOM05D002281 ORTHO05D006774 0.0e+00 1214.1 825 76.7
Nitab4.5_0001498g0040 Nicotiana tabacum HOM05D002281 ORTHO05D006774 0.0e+00 1212.2 837 75.6
Thhalv10020015m.g Eutrema salsugineum HOM05D002281 ORTHO05D006774 0.0e+00 1211.8 835 74.9
Gorai.013G119100 Gossypium raimondii HOM05D002281 ORTHO05D006774 0.0e+00 1211.1 825 76.5
PGR142G3453 Punica granatum HOM05D002281 ORTHO05D006774 0.0e+00 1208.4 827 75.1
Atru.chr2.1137 Acer truncatum HOM05D002281 ORTHO05D006774 0.0e+00 1206.0 834 75.2
AL3G14240 Arabidopsis lyrata HOM05D002281 ORTHO05D006774 0.0e+00 1205.7 897 71.3
Sp3g03170 Schrenkiella parvula HOM05D002281 ORTHO05D006774 0.0e+00 1203.7 878 71.5
THA.LOC104820754 Tarenaya hassleriana HOM05D002281 ORTHO05D006774 0.0e+00 1203.7 838 74.6
Nitab4.5_0006530g0020 Nicotiana tabacum HOM05D002281 ORTHO05D006774 0.0e+00 1203.3 838 75.5
CARHR078410 Cardamine hirsuta HOM05D002281 ORTHO05D006774 0.0e+00 1202.6 880 72.4
Carub.0003s0347 Capsella rubella HOM05D002281 ORTHO05D006774 0.0e+00 1201.4 838 74.2
Aqoxy2G03815 Aquilegia oxysepala HOM05D002281 ORTHO05D006774 0.0e+00 1200.7 862 72.5
AT3G04260 Arabidopsis thaliana HOM05D002281 ORTHO05D006774 0.0e+00 1200.7 896 71.2
Potri.019G025100 Populus trichocarpa HOM05D002281 ORTHO05D006774 0.0e+00 1200.7 873 73.0
CANSAT54G2391 Cannabis sativa HOM05D002281 ORTHO05D006774 0.0e+00 1199.1 877 71.4
Sopen04g021370 Solanum pennellii HOM05D002281 ORTHO05D006774 0.0e+00 1197.2 871 73.4
MSTRG.27429 Avicennia marina HOM05D002281 ORTHO05D006774 0.0e+00 1196.8 830 73.4
TAR365G0274 Trochodendron aralioides HOM05D002281 ORTHO05D006774 0.0e+00 1196.4 837 75.5
SGA_v2.0_scaffold62G21474 Striga asiatica HOM05D002281 ORTHO05D006774 0.0e+00 1195.3 889 70.8
Solyc04g050540.4 Solanum lycopersicum HOM05D002281 ORTHO05D006774 0.0e+00 1194.9 871 73.2
BcaNung04817 Brassica carinata HOM05D002281 ORTHO05D006774 0.0e+00 1191.4 896 73.0
BraA01t04526Z Brassica rapa HOM05D002281 ORTHO05D006774 0.0e+00 1191.4 884 71.2
BcaC09g47811 Brassica carinata HOM05D002281 ORTHO05D006774 0.0e+00 1190.6 868 71.8
CAN.G131.14 Capsicum annuum HOM05D002281 ORTHO05D006774 0.0e+00 1189.1 876 71.8
DCAR_027530 Daucus carota HOM05D002281 ORTHO05D006774 0.0e+00 1184.1 866 72.5
PSO017G1794 Papaver somniferum HOM05D002281 ORTHO05D006774 0.0e+00 1179.5 828 75.7
Migut.F02048 Erythranthe guttata HOM05D002281 ORTHO05D006774 0.0e+00 1170.6 897 69.3
PSO063G1810 Papaver somniferum HOM05D002281 ORTHO05D006774 0.0e+00 1162.9 829 74.1
Peaxi162Scf00071g00258 Petunia axillaris HOM05D002281 ORTHO05D006774 0.0e+00 1160.6 876 71.1
Lj2C48G13 Lonicera japonica HOM05D002281 ORTHO05D006774 0.0e+00 1159.8 860 69.4
Aa31LG5G14740 Aethionema arabicum HOM05D002281 ORTHO05D006774 0.0e+00 1157.9 845 71.7
ATR0787G153 Amborella trichopoda HOM05D002281 ORTHO05D006774 0.0e+00 1157.9 842 73.0
AUR62006996 Chenopodium quinoa HOM05D002281 ORTHO05D006774 0.0e+00 1134.0 858 68.8
AUR62000641 Chenopodium quinoa HOM05D002281 ORTHO05D006774 0.0e+00 1121.3 856 67.4
HanXRQChr14g0434631 Helianthus annuus HOM05D002281 ORTHO05D006774 0.0e+00 1113.6 858 66.7
Prupe.6G354700 Prunus persica HOM05D002281 ORTHO05D006774 0.0e+00 1112.1 856 68.2
Lsat_1_v5_gn_2_16580 Lactuca sativa HOM05D002281 ORTHO05D006774 0.0e+00 1108.6 850 67.9
EL10Ac4g09786 Beta vulgaris HOM05D002281 ORTHO05D006774 0.0e+00 1107.4 845 68.5
ECA238G3638 Erigeron canadensis HOM05D002281 ORTHO05D006774 0.0e+00 1090.5 821 67.5
Dinv05783 Davidia involucrata HOM05D002281 ORTHO05D006774 0.0e+00 1088.6 847 69.2
Hund07166 Selenicereus undatus HOM05D002281 ORTHO05D006774 0.0e+00 1087.8 852 68.9
Sabra19G0034700 Salix brachista HOM05D002281 ORTHO05D006774 0.0e+00 1084.3 826 69.6
Os10g0462800 Oryza sativa ssp. japonica HOM05D002281 ORTHO05D006774 5.1e-309 1064.3 839 66.2
unitig_899.g14420 Utricularia gibba HOM05D002281 ORTHO05D006774 8.7e-309 1063.5 894 64.5
Zm00001eb046590 Zea mays HOM05D002281 ORTHO05D006774 4.8e-307 1057.7 823 68.4
A01p40910 Brassica napus HOM05D002281 ORTHO05D006774 2.6e-305 1052.0 788 70.8
BNapus_Darmor_BZH_scaffold_78p00800 Brassica napus HOM05D002281 ORTHO05D006774 2.6e-305 1052.0 788 70.8
HPP92_025553 Vanilla planifolia HOM05D002281 ORTHO05D006774 4.5e-265 918.3 862 60.2
Sc16g0010030 Simmondsia chinensis HOM05D002281 ORTHO05D006774 2.2e-264 916.0 619 77.2
Hma1.2p1_0123F.1_g058110 Hydrangea macrophylla HOM05D002281 ORTHO05D006774 1.6e-246 856.7 559 78.9
SEGI_16679 Sequoiadendron giganteum HOM05D002281 ORTHO05D006774 8.1e-238 827.8 878 51.1
Sabra19G0037700 Salix brachista HOM05D002281 ORTHO05D006774 6.8e-237 824.7 611 72.7
AagrBONN_evm.TU.Sc2ySwM_368.3437 Anthoceros agrestis HOM05D002281 ORTHO05D006774 2.4e-226 789.6 818 51.5
CiPaw.07G076800 Carya illinoinensis HOM05D002281 ORTHO05D006774 8.9e-221 771.2 473 79.9
Hma1.2p1_0123F.1_g058100 Hydrangea macrophylla HOM05D002281 ORTHO05D006774 8.4e-219 764.6 526 75.9
Mapoly0031s0123 Marchantia polymorpha HOM05D002281 ORTHO05D006774 2.4e-213 746.5 821 49.3
Cc09_g03090 Coffea canephora HOM05D002281 ORTHO05D006774 1.5e-212 743.8 495 74.9
ClCG03G011380 Citrullus lanatus HOM05D002281 ORTHO05D006774 1.1e-207 727.6 525 76.0
Pp3c1_8170 Physcomitrium patens HOM05D002281 ORTHO05D006774 6.7e-192 675.2 822 48.8
Haze_04484 Corylus avellana HOM05D002281 ORTHO05D006774 1.4e-189 667.5 570 66.3
CDE02G2074 Ceratophyllum demersum HOM05D002281 ORTHO05D006774 2.4e-189 666.8 482 73.7
SMO367G1266 Selaginella moellendorffii HOM05D002281 ORTHO05D006774 1.3e-179 634.4 824 41.3
vmacro19967 Vaccinium macrocarpon HOM05D002281 ORTHO05D006774 2.9e-163 580.1 458 69.7
Rhsim05G0169000 Rhododendron simsii HOM05D002281 ORTHO05D006774 1.3e-155 554.7 419 70.6
CBR_g7996 Chara braunii HOM05D002281 ORTHO05D006774 2.1e-145 520.8 688 40.1
Cc00_g32050 Coffea canephora HOM05D002281 ORTHO05D006774 1.6e-137 494.6 360 75.6
Cpa.g.sc51.36 Carica papaya HOM05D002281 ORTHO05D006774 6.2e-97 359.8 311 69.8
QL03p033056 Quercus lobata HOM05D002281 ORTHO05D006774 1.1e-93 349.0 210 82.4
CDE02G1511 Ceratophyllum demersum HOM05D002281 ORTHO05D006774 1.2e-87 328.9 181 86.2
Cpa.g.sc51.34 Carica papaya HOM05D002281 ORTHO05D006774 1.3e-83 315.5 253 64.8
ClCG03G011350 Citrullus lanatus HOM05D002281 ORTHO05D006774 6.9e-80 303.1 221 73.8
CiPaw.07G076900 Carya illinoinensis HOM05D002281 ORTHO05D006774 2.6e-79 301.2 192 77.1
Haze_04483 Corylus avellana HOM05D002281 ORTHO05D006774 1.1e-77 295.8 244 65.6
vmacro19969 Vaccinium macrocarpon HOM05D002281 ORTHO05D006774 1.3e-75 288.9 227 62.1
Hma1.2p1_0123F.1_g058090 Hydrangea macrophylla HOM05D002281 ORTHO05D006774 1.5e-74 285.4 224 66.1
Ah.13g065840 Amaranthus hybridus HOM05D002281 ORTHO05D006774 1.3e-70 272.3 222 64.0
Actinidia39975 Actinidia chinensis HOM05D002281 ORTHO05D006774 6.5e-70 270.0 194 69.1
Actinidia39977 Actinidia chinensis HOM05D002281 ORTHO05D006774 1.3e-49 202.6 144 69.4
FAN14G5351 Fragaria x ananassa HOM05D002281 ORTHO05D006774 2.2e-46 191.8 162 63.6
ClCG03G011370 Citrullus lanatus HOM05D002281 ORTHO05D006774 5.0e-46 190.7 111 82.9
Hma1.2p1_0463F.1_g158160 Hydrangea macrophylla HOM05D002281 ORTHO05D006774 9.4e-45 186.4 110 80.0
vmacro19968 Vaccinium macrocarpon HOM05D002281 ORTHO05D006774 8.0e-44 183.3 113 77.0
AL685U10020 Arabidopsis lyrata HOM05D002281 ORTHO05D006774 6.7e-43 180.3 123 73.2
Sopen01g022760 Solanum pennellii HOM05D002281 ORTHO05D006774 5.2e-35 154.1 210 45.7
QL03p032920 Quercus lobata HOM05D002281 ORTHO05D006774 6.3e-33 147.1 102 70.6
Cpa.g.sc51.35 Carica papaya HOM05D002281 ORTHO05D006774 8.3e-33 146.7 87 81.6
QL03p033074 Quercus lobata HOM05D002281 ORTHO05D006774 2.0e-31 142.1 94 75.5
Solyc01g016930.1 Solanum lycopersicum HOM05D002281 ORTHO05D006774 4.0e-19 101.3 82 65.9
Solyc01g015200.1 Solanum lycopersicum HOM05D002281 ORTHO05D006774 6.8e-19 100.5 168 39.3
RcHm_v2.0_Chr1g0330901 Rosa chinensis HOM05D002281 ORTHO05D006774 2.0e-18 99.0 69 69.6
Solyc01g013970.1 Solanum lycopersicum HOM05D002281 ORTHO05D006774 2.2e-17 95.5 89 58.4
TPR.G31597 Trifolium pratense HOM05D002281 ORTHO05D006774 1.9e-16 92.4 79 60.8
Solyc01g016920.1 Solanum lycopersicum HOM05D002281 ORTHO05D006774 1.6e-15 89.4 53 83.0
Solyc01g014000.1 Solanum lycopersicum HOM05D002281 ORTHO05D006774 2.0e-15 89.0 73 61.6
CDE08G0752 Ceratophyllum demersum HOM05D002281 ORTHO05D006774 1.0e-14 86.7 55 74.5
Actinidia39976 Actinidia chinensis HOM05D002281 ORTHO05D006774 2.5e-13 82.0 72 65.3
Solyc01g016870.1 Solanum lycopersicum HOM05D002281 ORTHO05D006774 3.6e-12 78.2 49 79.6
BolC1t05755H Brassica oleracea HOM05D002281 ORTHO05D006774 2.3e-11 75.5 54 63.0
BraA01t04528Z Brassica rapa HOM05D002281 ORTHO05D006774 1.0e-06 60.1 49 57.1
BolC1t05758H Brassica oleracea HOM05D002281 ORTHO05D006774 1.7e-06 59.3 42 61.9
FvH4_6g01352 Fragaria vesca HOM05D002281 ORTHO05D006774 5.1e-06 57.8 40 65.0


User provided reference genes

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