Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0006803 Lotus japonicus HOM05D000880 ORTHO05D007053 5.1e-290 1000.3 500 100.0
Lj5g0001867 Lotus japonicus HOM05D000880 ORTHO05D007053 3.0e-189 665.6 548 68.6
VMungo0720G1277 Vigna mungo HOM05D000880 ORTHO05D007053 1.1e-170 604.0 557 63.0
Glyma.02G017400 Glycine max HOM05D000880 ORTHO05D007053 4.0e-170 602.1 554 62.6
Glyma.10G017800 Glycine max HOM05D000880 ORTHO05D007053 3.4e-169 599.0 553 62.7
Ca_10329_v3 Cicer arietinum L. HOM05D000880 ORTHO05D007053 9.9e-169 597.4 738 51.9
Phvul.007G147200 Phaseolus vulgaris HOM05D000880 ORTHO05D007053 1.1e-167 594.0 550 62.7
TPR.G33956 Trifolium pratense HOM05D000880 ORTHO05D007053 3.6e-163 578.9 559 61.9
Lalb_Chr02g0146401 Lupinus albus HOM05D000880 ORTHO05D007053 9.0e-162 574.3 556 61.3
arahy.Tifrunner.gnm1.ann1.VZZJ8Q Arachis hypogaea HOM05D000880 ORTHO05D007053 4.5e-161 572.0 582 59.5
Medtr1g088410 Medicago truncatula HOM05D000880 ORTHO05D007053 4.9e-160 568.5 559 61.2
Lalb_Chr21g0309241 Lupinus albus HOM05D000880 ORTHO05D007053 4.2e-159 565.5 557 60.9
Psat6g165160 Pisum sativum HOM05D000880 ORTHO05D007053 1.8e-157 560.1 555 60.7
arahy.Tifrunner.gnm1.ann1.JXQ8LX Arachis hypogaea HOM05D000880 ORTHO05D007053 6.7e-157 558.1 604 57.3
Haze_04945 Corylus avellana HOM05D000880 ORTHO05D007053 7.9e-150 534.6 594 55.9
Cfa005905 Carpinus fangiana HOM05D000880 ORTHO05D007053 8.7e-149 531.2 549 58.5
QL12p028391 Quercus lobata HOM05D000880 ORTHO05D007053 8.7e-149 531.2 548 58.6
Manes.05G061800 Manihot esculenta HOM05D000880 ORTHO05D007053 1.1e-148 530.8 549 58.5
CiPaw.08G094700 Carya illinoinensis HOM05D000880 ORTHO05D007053 1.5e-148 530.4 547 58.9
Potri.014G128400 Populus trichocarpa HOM05D000880 ORTHO05D007053 6.9e-146 521.5 544 57.9
MD03G1288900 Malus domestica HOM05D000880 ORTHO05D007053 2.0e-145 520.0 542 57.6
Actinidia01490 Actinidia chinensis HOM05D000880 ORTHO05D007053 7.6e-145 518.1 546 58.1
RcHm_v2.0_Chr6g0294121 Rosa chinensis HOM05D000880 ORTHO05D007053 1.4e-143 513.8 543 56.9
CSS0009761 Camellia sinensis var. sinensis HOM05D000880 ORTHO05D007053 3.2e-143 512.7 546 58.1
Prupe.8G262200 Prunus persica HOM05D000880 ORTHO05D007053 2.7e-142 509.6 547 56.3
Hund05431 Selenicereus undatus HOM05D000880 ORTHO05D007053 4.6e-142 508.8 545 56.0
FvH4_2g25810 Fragaria vesca HOM05D000880 ORTHO05D007053 1.0e-141 507.7 552 56.0
PGR044G2013 Punica granatum HOM05D000880 ORTHO05D007053 1.8e-141 506.9 549 56.3
Thecc.01G301400 Theobroma cacao HOM05D000880 ORTHO05D007053 1.8e-141 506.9 549 56.1
FAN24G3174 Fragaria x ananassa HOM05D000880 ORTHO05D007053 5.1e-141 505.4 550 55.8
Dinv02562 Davidia involucrata HOM05D000880 ORTHO05D007053 8.7e-141 504.6 545 56.3
Rhsim13G0009800 Rhododendron simsii HOM05D000880 ORTHO05D007053 7.4e-140 501.5 546 56.4
COL.COLO4_23337 Corchorus olitorius HOM05D000880 ORTHO05D007053 2.8e-139 499.6 549 55.7
GSVIVG01028027001 Vitis vinifera HOM05D000880 ORTHO05D007053 8.2e-139 498.0 539 56.0
Ciclev10018978m.g Citrus clementina HOM05D000880 ORTHO05D007053 1.8e-138 496.9 547 55.2
Sc05g0003770 Simmondsia chinensis HOM05D000880 ORTHO05D007053 4.1e-138 495.7 590 53.4
EL10Ac7g17514 Beta vulgaris HOM05D000880 ORTHO05D007053 6.9e-138 495.0 546 55.7
vmacro02446 Vaccinium macrocarpon HOM05D000880 ORTHO05D007053 5.9e-137 491.9 560 54.5
Gohir.A11G114100 Gossypium hirsutum HOM05D000880 ORTHO05D007053 2.9e-136 489.6 540 56.3
Eucgr.K03489 Eucalyptus grandis HOM05D000880 ORTHO05D007053 3.8e-136 489.2 541 55.3
Dinv33058 Davidia involucrata HOM05D000880 ORTHO05D007053 6.5e-136 488.4 545 55.0
Aqoxy2G02934 Aquilegia oxysepala HOM05D000880 ORTHO05D007053 8.5e-136 488.0 540 55.9
Oeu054121.1 Olea europaea HOM05D000880 ORTHO05D007053 1.4e-135 487.3 590 52.9
Gorai.007G127700 Gossypium raimondii HOM05D000880 ORTHO05D007053 2.5e-135 486.5 540 56.1
TWI59G0706 Tripterygium wilfordii HOM05D000880 ORTHO05D007053 3.2e-135 486.1 540 55.6
Atru.chr5.1139 Acer truncatum HOM05D000880 ORTHO05D007053 1.4e-133 480.7 518 57.1
MELO3C026912.2 Cucumis melo HOM05D000880 ORTHO05D007053 3.0e-133 479.6 551 54.3
CsaV3_1G043050 Cucumis sativus L. HOM05D000880 ORTHO05D007053 6.7e-133 478.4 550 54.4
ClCG03G013010 Citrullus lanatus HOM05D000880 ORTHO05D007053 2.0e-132 476.9 550 54.5
MSTRG.9184 Avicennia marina HOM05D000880 ORTHO05D007053 9.7e-132 474.6 538 54.6
Migut.D00148 Erythranthe guttata HOM05D000880 ORTHO05D007053 1.3e-131 474.2 538 53.9
PSO339G1812 Papaver somniferum HOM05D000880 ORTHO05D007053 2.2e-131 473.4 545 53.9
Thhalv10010145m.g Eutrema salsugineum HOM05D000880 ORTHO05D007053 2.8e-131 473.0 541 53.6
PSO384G2678 Papaver somniferum HOM05D000880 ORTHO05D007053 2.8e-131 473.0 545 53.8
BcaB01g00245 Brassica carinata HOM05D000880 ORTHO05D007053 3.7e-131 472.6 539 53.2
A09p46740 Brassica napus HOM05D000880 ORTHO05D007053 3.7e-131 472.6 541 53.4
BraA09t40136Z Brassica rapa HOM05D000880 ORTHO05D007053 3.7e-131 472.6 541 53.4
Carub.0005s2034 Capsella rubella HOM05D000880 ORTHO05D007053 1.1e-130 471.1 541 53.6
Peaxi162Scf00001g42030 Petunia axillaris HOM05D000880 ORTHO05D007053 1.1e-130 471.1 544 54.4
BolC8t50508H Brassica oleracea HOM05D000880 ORTHO05D007053 2.4e-130 469.9 541 53.2
C08p29070 Brassica napus HOM05D000880 ORTHO05D007053 3.1e-130 469.5 541 53.0
Cc01_g20910 Coffea canephora HOM05D000880 ORTHO05D007053 6.9e-130 468.4 589 50.6
AT3G53760 Arabidopsis thaliana HOM05D000880 ORTHO05D007053 1.2e-129 467.6 541 53.2
BcaC07g39735 Brassica carinata HOM05D000880 ORTHO05D007053 1.2e-129 467.6 540 53.0
CAN.G472.10 Capsicum annuum HOM05D000880 ORTHO05D007053 1.2e-129 467.6 544 54.4
CARHR163650 Cardamine hirsuta HOM05D000880 ORTHO05D007053 2.0e-129 466.8 541 53.4
Gorai.004G090500 Gossypium raimondii HOM05D000880 ORTHO05D007053 1.0e-128 464.5 542 53.0
MBI14_g32928_MAGBIO Magnolia biondii HOM05D000880 ORTHO05D007053 1.0e-128 464.5 513 55.2
THA.LOC104802176 Tarenaya hassleriana HOM05D000880 ORTHO05D007053 2.9e-128 463.0 544 52.8
Sp5g08620 Schrenkiella parvula HOM05D000880 ORTHO05D007053 3.8e-128 462.6 541 52.7
Solyc09g075190.3 Solanum lycopersicum HOM05D000880 ORTHO05D007053 1.1e-127 461.1 543 53.4
Sopen09g030010 Solanum pennellii HOM05D000880 ORTHO05D007053 1.1e-127 461.1 543 53.4
AL5G34740 Arabidopsis lyrata HOM05D000880 ORTHO05D007053 2.5e-127 459.9 541 52.9
Sed0026689 Sechium edule HOM05D000880 ORTHO05D007053 7.2e-127 458.4 528 54.2
FAN20G0148 Fragaria x ananassa HOM05D000880 ORTHO05D007053 1.6e-126 457.2 500 55.8
Aa31LG10G9270 Aethionema arabicum HOM05D000880 ORTHO05D007053 4.7e-126 455.7 547 51.6
DCAR_018329 Daucus carota HOM05D000880 ORTHO05D007053 3.0e-125 453.0 522 54.2
SalBow3G0448 Salvia bowleyana HOM05D000880 ORTHO05D007053 6.7e-125 451.8 530 53.6
HanXRQChr04g0114151 Helianthus annuus HOM05D000880 ORTHO05D007053 1.3e-123 447.6 591 49.7
HPP92_007056 Vanilla planifolia HOM05D000880 ORTHO05D007053 4.8e-123 445.7 545 50.5
FAN15G1023 Fragaria x ananassa HOM05D000880 ORTHO05D007053 6.3e-123 445.3 537 53.1
Ah.15g093160 Amaranthus hybridus HOM05D000880 ORTHO05D007053 1.1e-122 444.5 546 52.6
Hma1.2p1_0491F.1_g164650 Hydrangea macrophylla HOM05D000880 ORTHO05D007053 4.1e-122 442.6 424 61.1
ECA236G1870 Erigeron canadensis HOM05D000880 ORTHO05D007053 5.3e-122 442.2 544 51.8
Lsat_1_v5_gn_8_164240 Lactuca sativa HOM05D000880 ORTHO05D007053 3.5e-121 439.5 535 52.1
ATR0057G121 Amborella trichopoda HOM05D000880 ORTHO05D007053 1.0e-120 438.0 545 50.8
Zm00001eb282720 Zea mays HOM05D000880 ORTHO05D007053 8.0e-118 428.3 538 50.7
Nitab4.5_0002433g0080 Nicotiana tabacum HOM05D000880 ORTHO05D007053 6.7e-117 425.2 548 50.7
Nitab4.5_0001879g0170 Nicotiana tabacum HOM05D000880 ORTHO05D007053 3.7e-115 419.5 530 50.4
Os05g0154500 Oryza sativa ssp. japonica HOM05D000880 ORTHO05D007053 6.3e-115 418.7 530 50.4
CDE01G0629 Ceratophyllum demersum HOM05D000880 ORTHO05D007053 5.9e-113 412.1 543 50.3
MD11G1309000 Malus domestica HOM05D000880 ORTHO05D007053 1.2e-110 404.4 549 49.7
Lsat_1_v5_gn_9_43261 Lactuca sativa HOM05D000880 ORTHO05D007053 8.8e-109 398.3 547 48.3
SGA_v2.0_scaffold1G00361 Striga asiatica HOM05D000880 ORTHO05D007053 1.3e-107 394.4 579 45.9
AUR62008670 Chenopodium quinoa HOM05D000880 ORTHO05D007053 2.8e-107 393.3 608 44.4
Cpa.g.sc9.255 Carica papaya HOM05D000880 ORTHO05D007053 6.3e-107 392.1 541 48.8
MELO3C015161.2 Cucumis melo HOM05D000880 ORTHO05D007053 3.5e-105 386.3 486 50.8
AUR62025574 Chenopodium quinoa HOM05D000880 ORTHO05D007053 4.5e-105 386.0 531 47.6
BcaB01g00241 Brassica carinata HOM05D000880 ORTHO05D007053 2.7e-102 376.7 498 49.4
Mapoly0009s0235 Marchantia polymorpha HOM05D000880 ORTHO05D007053 4.1e-98 362.8 541 45.7
AagrBONN_evm.TU.Sc2ySwM_117.410 Anthoceros agrestis HOM05D000880 ORTHO05D007053 5.4e-98 362.5 537 46.6
Pp3c14_20420 Physcomitrium patens HOM05D000880 ORTHO05D007053 1.2e-97 361.3 522 47.3
Nn3g21501 Nelumbo nucifera HOM05D000880 ORTHO05D007053 1.1e-95 354.8 427 51.3
SMO364G0941 Selaginella moellendorffii HOM05D000880 ORTHO05D007053 2.0e-92 344.0 535 44.3
Gohir.A08G076500 Gossypium hirsutum HOM05D000880 ORTHO05D007053 7.5e-92 342.0 523 45.7
Gohir.D08G086000 Gossypium hirsutum HOM05D000880 ORTHO05D007053 1.0e-88 331.6 417 49.4
ECA247G4025 Erigeron canadensis HOM05D000880 ORTHO05D007053 3.3e-87 326.6 456 47.4
Gohir.D11G119200 Gossypium hirsutum HOM05D000880 ORTHO05D007053 5.6e-87 325.9 384 53.4
SHI15144 Sapria himalayana HOM05D000880 ORTHO05D007053 4.7e-86 322.8 477 45.1
TAR365G0367 Trochodendron aralioides HOM05D000880 ORTHO05D007053 5.4e-82 309.3 528 43.8
AUR62018540 Chenopodium quinoa HOM05D000880 ORTHO05D007053 1.6e-81 307.8 474 44.5
Lj2A1196G44 Lonicera japonica HOM05D000880 ORTHO05D007053 1.6e-78 297.7 331 56.2
Lj5g0011129 Lotus japonicus HOM05D000880 ORTHO05D007053 1.1e-77 295.0 144 99.3
unitig_32.g10658 Utricularia gibba HOM05D000880 ORTHO05D007053 9.2e-74 282.0 466 43.1
PGSC0003DMG400031813 Solanum tuberosum HOM05D000880 ORTHO05D007053 1.1e-66 258.5 321 53.3
HanXRQChr10g0285001 Helianthus annuus HOM05D000880 ORTHO05D007053 2.2e-59 234.2 289 49.8
arahy.Tifrunner.gnm1.ann1.D5VDWJ Arachis hypogaea HOM05D000880 ORTHO05D007053 4.9e-51 206.5 175 67.4
SEGI_35866 Sequoiadendron giganteum HOM05D000880 ORTHO05D007053 6.4e-51 206.1 202 56.9
PGR044G0168 Punica granatum HOM05D000880 ORTHO05D007053 2.8e-46 190.7 427 38.4
HanXRQChr10g0285011 Helianthus annuus HOM05D000880 ORTHO05D007053 6.9e-45 186.0 186 59.7
Lj2A1196G43 Lonicera japonica HOM05D000880 ORTHO05D007053 7.6e-36 156.0 108 77.8
Actinidia24361 Actinidia chinensis HOM05D000880 ORTHO05D007053 3.7e-30 137.1 301 37.5
CBR_g8601 Chara braunii HOM05D000880 ORTHO05D007053 1.8e-29 134.8 198 43.4
MCO03G526 Micromonas commoda HOM05D000880 ORTHO05D007053 7.2e-26 122.9 549 26.8
PRCOL_00000976 Prasinoderma coloniale HOM05D000880 ORTHO05D007053 1.8e-24 118.2 554 24.2
Actinidia21204 Actinidia chinensis HOM05D000880 ORTHO05D007053 1.3e-19 102.1 129 46.5
SEGI_07599 Sequoiadendron giganteum HOM05D000880 ORTHO05D007053 2.0e-15 88.2 118 46.6
Cre01.g019150 Chlamydomonas reinhardtii HOM05D000880 ORTHO05D007053 3.3e-15 87.4 448 24.3
Lj9C128T17 Lonicera japonica HOM05D000880 ORTHO05D007053 2.4e-13 81.3 109 47.7
CBR_g8603 Chara braunii HOM05D000880 ORTHO05D007053 2.5e-10 71.2 148 35.1
PGR044G2165 Punica granatum HOM05D000009 ORTHO05D000008 3.3e-07 60.8 109 40.4
SGA_v2.0_scaffold178G39483 Striga asiatica HOM05D000880 ORTHO05D007053 3.3e-07 60.8 66 51.5
arahy.Tifrunner.gnm1.ann1.67JHEV Arachis hypogaea HOM05D000880 ORTHO05D017463 7.4e-07 59.7 119 42.0
PGR044G1585 Punica granatum HOM05D000880 ORTHO05D017463 9.7e-07 59.3 75 52.0


User provided reference genes

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