Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0002326 Lotus japonicus HOM05D004582 ORTHO05D005507 3.7e-60 234.6 109 100.0
Lj5g0003678 Lotus japonicus HOM05D004582 ORTHO05D005507 3.7e-60 234.6 109 100.0
Lj5g0005298 Lotus japonicus HOM05D004582 ORTHO05D005507 3.7e-60 234.6 109 100.0
Lj6g0014483 Lotus japonicus HOM05D004582 ORTHO05D005507 3.3e-24 115.2 63 81.0
THA.LOC104800345 Tarenaya hassleriana HOM05D004582 ORTHO05D005507 4.7e-23 111.3 98 59.2
THA.LOC104819361 Tarenaya hassleriana HOM05D004582 ORTHO05D005507 4.7e-23 111.3 93 60.2
Eucgr.G02614 Eucalyptus grandis HOM05D004582 ORTHO05D005507 8.0e-23 110.5 93 61.3
Manes.01G004880 Manihot esculenta HOM05D004582 ORTHO05D005507 1.0e-22 110.2 93 60.2
Phvul.003G004200 Phaseolus vulgaris HOM05D004582 ORTHO05D005507 1.0e-22 110.2 63 74.6
vmacro00989 Vaccinium macrocarpon HOM05D004582 ORTHO05D005507 1.0e-22 110.2 93 60.2
VMungo0251G1823 Vigna mungo HOM05D000329 ORTHO05D002813 1.0e-22 110.2 63 74.6
Lsat_1_v5_gn_1_108541 Lactuca sativa HOM05D004582 ORTHO05D005507 1.8e-22 109.4 93 59.1
CANSAT78G1495 Cannabis sativa HOM05D004582 ORTHO05D005507 2.3e-22 109.0 93 59.1
Ciclev10017231m.g Citrus clementina HOM05D004582 ORTHO05D005507 2.3e-22 109.0 93 59.1
Phvul.001G068300 Phaseolus vulgaris HOM05D004582 ORTHO05D005507 2.3e-22 109.0 63 73.0
Glyma.17G000400 Glycine max HOM05D004582 ORTHO05D005507 3.0e-22 108.6 63 73.0
Lalb_Chr10g0094681 Lupinus albus HOM05D004582 ORTHO05D005507 3.0e-22 108.6 63 73.0
Potri.008G002400 Populus trichocarpa HOM05D004582 ORTHO05D005507 4.0e-22 108.2 93 59.1
Cfa005243 Carpinus fangiana HOM05D004582 ORTHO05D005507 5.2e-22 107.8 93 59.1
Potri.010G255000 Populus trichocarpa HOM05D004582 ORTHO05D005507 5.2e-22 107.8 93 59.1
QL03p073673 Quercus lobata HOM05D004582 ORTHO05D005507 5.2e-22 107.8 64 70.3
Cc11_g00370 Coffea canephora HOM05D004582 ORTHO05D005507 6.8e-22 107.5 98 56.1
GSVIVG01034346001 Vitis vinifera HOM05D004582 ORTHO05D005507 6.8e-22 107.5 63 73.0
CSS0028000 Camellia sinensis var. sinensis HOM05D004582 ORTHO05D005507 1.2e-21 106.7 93 58.1
Hma1.2p1_1901F.1_g307030 Hydrangea macrophylla HOM05D004582 ORTHO05D005507 1.2e-21 106.7 93 58.1
Hma1.2p1_2673F.1_g326700 Hydrangea macrophylla HOM05D004582 ORTHO05D005507 1.2e-21 106.7 93 58.1
Gohir.A04G109900 Gossypium hirsutum HOM05D004582 ORTHO05D005507 1.5e-21 106.3 98 57.1
Gohir.D04G150100 Gossypium hirsutum HOM05D004582 ORTHO05D005507 1.5e-21 106.3 98 57.1
Gorai.012G136700 Gossypium raimondii HOM05D004582 ORTHO05D005507 1.5e-21 106.3 98 57.1
Cfa008860 Carpinus fangiana HOM05D002331 ORTHO05D002624 2.0e-21 105.9 63 71.4
Dinv17660 Davidia involucrata HOM05D004582 ORTHO05D005507 2.0e-21 105.9 63 71.4
Duzib132G0727 Durio zibethinus HOM05D004582 ORTHO05D005507 2.0e-21 105.9 63 69.8
Glyma.07G274100 Glycine max HOM05D004582 ORTHO05D005507 2.0e-21 105.9 63 71.4
Solyc04g008750.3 Solanum lycopersicum HOM05D004582 ORTHO05D005507 2.0e-21 105.9 91 57.1
Sopen04g003930 Solanum pennellii HOM05D004582 ORTHO05D005507 2.0e-21 105.9 91 57.1
CAN.G419.18 Capsicum annuum HOM05D004582 ORTHO05D005507 2.6e-21 105.5 91 57.1
ClCG05G012130 Citrullus lanatus HOM05D004582 ORTHO05D005507 2.6e-21 105.5 63 69.8
MELO3C023752.2 Cucumis melo HOM05D004582 ORTHO05D005507 2.6e-21 105.5 63 69.8
CsaV3_3G020290 Cucumis sativus L. HOM05D004582 ORTHO05D005507 2.6e-21 105.5 63 69.8
Sed0002882 Sechium edule HOM05D004582 ORTHO05D005507 2.6e-21 105.5 63 69.8
PGSC0003DMG400025297 Solanum tuberosum HOM05D004582 ORTHO05D005507 2.6e-21 105.5 91 57.1
Actinidia04370 Actinidia chinensis HOM05D004582 ORTHO05D005507 3.4e-21 105.1 93 58.1
Duzib248G0155 Durio zibethinus HOM05D004582 ORTHO05D005507 3.4e-21 105.1 98 56.1
TWI15G0512 Tripterygium wilfordii HOM05D004582 ORTHO05D005507 3.4e-21 105.1 63 71.4
AL8G40820 Arabidopsis lyrata HOM05D004582 ORTHO05D005507 4.4e-21 104.8 63 73.0
AT5G63670 Arabidopsis thaliana HOM05D004582 ORTHO05D005507 4.4e-21 104.8 63 73.0
MSTRG.25043 Avicennia marina HOM05D004582 ORTHO05D005507 4.4e-21 104.8 63 69.8
BcaB07g29700 Brassica carinata HOM05D004582 ORTHO05D005507 4.4e-21 104.8 63 73.0
BcaC03g18219 Brassica carinata HOM05D004582 ORTHO05D005507 4.4e-21 104.8 63 73.0
A02p42940 Brassica napus HOM05D004582 ORTHO05D005507 4.4e-21 104.8 63 73.0
C02p62880 Brassica napus HOM05D004582 ORTHO05D005507 4.4e-21 104.8 63 73.0
BraA02t09217Z Brassica rapa HOM05D004582 ORTHO05D005507 4.4e-21 104.8 63 73.0
Carub.0008s2444 Capsella rubella HOM05D004582 ORTHO05D005507 4.4e-21 104.8 63 73.0
CARHR278210 Cardamine hirsuta HOM05D004582 ORTHO05D005507 4.4e-21 104.8 63 73.0
Thhalv10005155m.g Eutrema salsugineum HOM05D004582 ORTHO05D005507 4.4e-21 104.8 63 73.0
Sp2g26760 Schrenkiella parvula HOM05D004582 ORTHO05D005507 4.4e-21 104.8 63 73.0
Thecc.02G151700 Theobroma cacao HOM05D004582 ORTHO05D005507 4.4e-21 104.8 98 56.1
Atru.chr6.1863 Acer truncatum HOM05D004582 ORTHO05D005507 5.7e-21 104.4 63 69.8
Sed0027851 Sechium edule HOM05D004582 ORTHO05D005507 5.7e-21 104.4 63 69.8
Ca_16312_v3 Cicer arietinum L. HOM05D004582 ORTHO05D005507 7.5e-21 104.0 63 69.8
PGR142G2001 Punica granatum HOM05D004582 ORTHO05D005507 7.5e-21 104.0 93 57.0
Aa31LG10G11080 Aethionema arabicum HOM05D004582 ORTHO05D005507 9.8e-21 103.6 63 71.4
Aa31LG1G18160 Aethionema arabicum HOM05D004582 ORTHO05D005507 9.8e-21 103.6 63 71.4
Carub.0006s0753 Capsella rubella HOM05D004582 ORTHO05D005507 9.8e-21 103.6 63 73.0
CiPaw.06G093300 Carya illinoinensis HOM05D004582 ORTHO05D005507 9.8e-21 103.6 93 57.0
Oeu039967.1 Olea europaea HOM05D004582 ORTHO05D005507 9.8e-21 103.6 66 66.7
SGA_v2.0_scaffold231G43443 Striga asiatica HOM05D004582 ORTHO05D005507 9.8e-21 103.6 63 68.3
SGA_v2.0_scaffold417G51254 Striga asiatica HOM05D004582 ORTHO05D005507 9.8e-21 103.6 63 68.3
Atru.chr11.31 Acer truncatum HOM05D004582 ORTHO05D005507 1.3e-20 103.2 85 56.5
Aa31LG3G17960 Aethionema arabicum HOM05D004582 ORTHO05D005507 1.3e-20 103.2 63 71.4
Oeu002508.1 Olea europaea HOM05D004582 ORTHO05D005507 1.3e-20 103.2 63 68.3
SalBow6G5789 Salvia bowleyana HOM05D004582 ORTHO05D005507 1.3e-20 103.2 93 54.8
SalBow8G4318 Salvia bowleyana HOM05D004582 ORTHO05D005507 1.3e-20 103.2 93 54.8
TAR629G2421 Trochodendron aralioides HOM05D004582 ORTHO05D005507 1.7e-20 102.8 63 68.3
AT5G08565 Arabidopsis thaliana HOM05D004582 ORTHO05D005507 2.8e-20 102.1 63 71.4
CARHR204400 Cardamine hirsuta HOM05D004582 ORTHO05D005507 2.8e-20 102.1 83 62.7
DCAR_026806 Daucus carota HOM05D004582 ORTHO05D005507 2.8e-20 102.1 63 68.3
unitig_749.g13837 Utricularia gibba HOM05D004582 ORTHO05D005507 2.8e-20 102.1 63 66.7
COL.COLO4_33156 Corchorus olitorius HOM05D004582 ORTHO05D005507 3.7e-20 101.7 63 68.3
Atru.chr11.27 Acer truncatum HOM05D004582 ORTHO05D005507 4.9e-20 101.3 85 55.3
CiPaw.05G123600 Carya illinoinensis HOM05D004582 ORTHO05D005507 4.9e-20 101.3 63 71.4
MD04G1047800 Malus domestica HOM05D004582 ORTHO05D005507 4.9e-20 101.3 92 53.3
Peaxi162Scf00329g00317 Petunia axillaris HOM05D004582 ORTHO05D005507 4.9e-20 101.3 91 56.0
Psat5g071960 Pisum sativum HOM05D004582 ORTHO05D005507 4.9e-20 101.3 63 68.3
AL6G19290 Arabidopsis lyrata HOM05D004582 ORTHO05D005507 6.3e-20 100.9 63 69.8
MD09G1278200 Malus domestica HOM05D004582 ORTHO05D005507 8.3e-20 100.5 63 68.3
Medtr3g092730 Medicago truncatula HOM05D004582 ORTHO05D005507 8.3e-20 100.5 98 52.0
Medtr3g092770 Medicago truncatula HOM05D004582 ORTHO05D005507 8.3e-20 100.5 98 52.0
MSTRG.1036 Avicennia marina HOM05D004582 ORTHO05D005507 1.1e-19 100.1 63 65.1
Gohir.D13G059000 Gossypium hirsutum HOM05D004582 ORTHO05D005507 1.1e-19 100.1 63 65.1
MBI11_g25051_MAGBIO Magnolia biondii HOM05D004582 ORTHO05D005507 1.1e-19 100.1 63 66.7
Nitab4.5_0000129g0010 Nicotiana tabacum HOM05D004582 ORTHO05D005507 1.1e-19 100.1 91 54.9
Prupe.3G015100 Prunus persica HOM05D004582 ORTHO05D005507 1.1e-19 100.1 93 54.8
ATR0772G012 Amborella trichopoda HOM05D004582 ORTHO05D005507 1.4e-19 99.8 63 65.1
Migut.N02765 Erythranthe guttata HOM05D004582 ORTHO05D005507 1.4e-19 99.8 93 53.8
Gohir.A13G062900 Gossypium hirsutum HOM05D004582 ORTHO05D005507 1.4e-19 99.8 98 52.0
MD17G1271200 Malus domestica HOM05D004582 ORTHO05D005507 1.4e-19 99.8 63 68.3
Nn8g39808 Nelumbo nucifera HOM05D004582 ORTHO05D005507 1.8e-19 99.4 67 67.2
ATR0693G307 Amborella trichopoda HOM05D004582 ORTHO05D005507 2.4e-19 99.0 63 65.1
Hund08683 Selenicereus undatus HOM05D004582 ORTHO05D005507 4.1e-19 98.2 63 63.5
Sc06g0007770 Simmondsia chinensis HOM05D004582 ORTHO05D005507 5.4e-19 97.8 63 65.1
BcaB01g05655 Brassica carinata HOM05D004582 ORTHO05D005507 7.0e-19 97.4 63 69.8
A03p03980 Brassica napus HOM05D004582 ORTHO05D005507 7.0e-19 97.4 63 69.8
C03p04450 Brassica napus HOM05D004582 ORTHO05D005507 7.0e-19 97.4 63 69.8
Sp6g34300 Schrenkiella parvula HOM05D004582 ORTHO05D005507 7.0e-19 97.4 63 69.8
EL10Ac9g23021 Beta vulgaris HOM05D004582 ORTHO05D005507 9.2e-19 97.1 63 61.9
CDE07G1374 Ceratophyllum demersum HOM05D004582 ORTHO05D005507 9.2e-19 97.1 63 63.5
AUR62032890 Chenopodium quinoa HOM05D004582 ORTHO05D005507 1.2e-18 96.7 63 65.1
ECA246G1034 Erigeron canadensis HOM05D004582 ORTHO05D005507 1.2e-18 96.7 63 65.1
HanXRQChr15g0475831 Helianthus annuus HOM05D004582 ORTHO05D005507 1.2e-18 96.7 98 51.0
PSO541G0162 Papaver somniferum HOM05D004582 ORTHO05D005507 1.2e-18 96.7 63 63.5
PSO675G8561 Papaver somniferum HOM05D004582 ORTHO05D005507 1.2e-18 96.7 63 63.5
BcaB01g05582 Brassica carinata HOM05D004582 ORTHO05D005507 1.6e-18 96.3 63 68.3
Aqoxy3G01747 Aquilegia oxysepala HOM05D004582 ORTHO05D005507 2.7e-18 95.5 63 61.9
Thhalv10015347m.g Eutrema salsugineum HOM05D004582 ORTHO05D005507 2.7e-18 95.5 63 68.3
HPP92_027251 Vanilla planifolia HOM05D004582 ORTHO05D005507 2.7e-18 95.5 63 61.9
Aqoxy5G02794 Aquilegia oxysepala HOM05D004582 ORTHO05D005507 3.5e-18 95.1 63 63.5
TPR.G31176 Trifolium pratense HOM05D004582 ORTHO05D005507 3.5e-18 95.1 63 61.9
SEGI_05202 Sequoiadendron giganteum HOM05D004582 ORTHO05D005507 7.8e-18 94.0 63 60.3
Ah.11g040470 Amaranthus hybridus HOM05D004582 ORTHO05D005507 1.3e-17 93.2 52 71.2
PSO339G5842 Papaver somniferum HOM05D004582 ORTHO05D005507 1.7e-17 92.8 63 61.9
SGA_v2.0_scaffold14G06942 Striga asiatica HOM05D004582 ORTHO05D005507 2.3e-17 92.4 65 56.9
SEGI_39424 Sequoiadendron giganteum HOM05D004582 ORTHO05D005507 5.0e-17 91.3 63 58.7
HanXRQChr01g0026751 Helianthus annuus HOM05D004582 ORTHO05D005507 8.6e-17 90.5 62 62.9
HanXRQChr01g0026901 Helianthus annuus HOM05D004582 ORTHO05D005507 8.6e-17 90.5 62 62.9
RcHm_v2.0_Chr4g0406241 Rosa chinensis HOM05D004582 ORTHO05D005507 8.6e-17 90.5 93 49.5
Os07g0623400 Oryza sativa ssp. japonica HOM05D004582 ORTHO05D005507 1.1e-16 90.1 63 58.7
FvH4_4g10630 Fragaria vesca HOM05D004582 ORTHO05D005507 1.5e-16 89.7 93 49.5
FAN07G0418 Fragaria x ananassa HOM05D004582 ORTHO05D005507 1.5e-16 89.7 93 49.5
FAN12G0218 Fragaria x ananassa HOM05D004582 ORTHO05D005507 1.5e-16 89.7 93 49.5
FAN12G1626 Fragaria x ananassa HOM05D004582 ORTHO05D005507 1.5e-16 89.7 93 49.5
FAN17G0627 Fragaria x ananassa HOM05D004582 ORTHO05D005507 1.5e-16 89.7 93 49.5
Pp3c6_2640 Physcomitrium patens HOM05D004582 ORTHO05D005507 1.5e-16 89.7 64 54.7
Mapoly0166s0006 Marchantia polymorpha HOM05D004582 ORTHO05D005507 9.5e-16 87.0 63 57.1
AagrBONN_evm.TU.Sc2ySwM_344.5487 Anthoceros agrestis HOM05D004582 ORTHO05D005507 1.2e-15 86.7 64 56.2
SMO358G0649 Selaginella moellendorffii HOM05D004582 ORTHO05D005507 1.6e-15 86.3 63 57.1
SalBow6G4393 Salvia bowleyana HOM05D004582 ORTHO05D005507 4.7e-15 84.7 98 45.9
SalBow8G4232 Salvia bowleyana HOM05D004582 ORTHO05D005507 4.7e-15 84.7 98 45.9
Gorai.013G066800 Gossypium raimondii HOM05D004582 ORTHO05D005507 8.0e-15 84.0 134 38.8
Mapoly0092s0011 Marchantia polymorpha HOM05D004582 ORTHO05D005507 8.0e-15 84.0 63 54.0
CBR_g44398 Chara braunii HOM05D004582 ORTHO05D005507 1.4e-14 83.2 54 61.1
MCO11G500 Micromonas commoda HOM05D004582 ORTHO05D005507 1.4e-14 83.2 63 47.6
FAN22G0072 Fragaria x ananassa HOM05D004582 ORTHO05D005507 2.6e-13 79.0 93 47.3
PRCOL_00005197 Prasinoderma coloniale HOM05D004582 ORTHO05D005507 2.6e-13 79.0 64 48.4
BolC2t12361H Brassica oleracea HOM05D004582 ORTHO05D005507 4.4e-13 78.2 63 58.7
Nitab4.5_0008730g0050 Nicotiana tabacum HOM05D004582 ORTHO05D005507 7.0e-11 70.9 48 62.5
Nitab4.5_0000129g0060 Nicotiana tabacum HOM05D004582 ORTHO05D005507 2.7e-10 68.9 37 73.0
Sc06g0007290 Simmondsia chinensis HOM05D004582 ORTHO05D005507 2.3e-09 65.9 47 57.4
MD07G1114100 Malus domestica HOM05D004582 ORTHO05D005507 8.6e-09 63.9 36 72.2
Cre02.g116300 Chlamydomonas reinhardtii HOM05D004582 ORTHO05D005507 1.1e-06 57.0 63 42.9


User provided reference genes

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