Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0003460 Lotus japonicus HOM05D004426 ORTHO05D005417 0.0e+00 4140.1 2200 100.0
Glyma.02G195600 Glycine max HOM05D004426 ORTHO05D005417 0.0e+00 3401.3 2206 82.9
Glyma.10G082100 Glycine max HOM05D004426 ORTHO05D005417 0.0e+00 3399.8 2204 82.8
Ca_11691_v3 Cicer arietinum L. HOM05D004426 ORTHO05D005417 0.0e+00 3374.3 2209 83.0
Phvul.007G267500 Phaseolus vulgaris HOM05D004426 ORTHO05D005417 0.0e+00 3352.4 2209 82.1
Lalb_Chr06g0172651 Lupinus albus HOM05D004426 ORTHO05D005417 0.0e+00 3328.5 2212 81.6
TPR.G2812 Trifolium pratense HOM05D004426 ORTHO05D005417 0.0e+00 3296.9 2213 81.3
arahy.Tifrunner.gnm1.ann1.C5PQVK Arachis hypogaea HOM05D004426 ORTHO05D005417 0.0e+00 3237.6 2219 79.2
Psat6g115600 Pisum sativum HOM05D004426 ORTHO05D005417 0.0e+00 3235.7 2246 79.6
Medtr1g056800 Medicago truncatula HOM05D004426 ORTHO05D005417 0.0e+00 3220.3 2217 79.3
arahy.Tifrunner.gnm1.ann1.S879XT Arachis hypogaea HOM05D004426 ORTHO05D005417 0.0e+00 3206.0 2219 78.6
VMungo0720G0551 Vigna mungo HOM05D004426 ORTHO05D005417 0.0e+00 3033.4 2121 78.4
QL07p036440 Quercus lobata HOM05D004426 ORTHO05D005417 0.0e+00 2616.6 2225 66.7
Cfa020044 Carpinus fangiana HOM05D004426 ORTHO05D005417 0.0e+00 2541.5 2223 65.4
RcHm_v2.0_Chr3g0476141 Rosa chinensis HOM05D004426 ORTHO05D005417 0.0e+00 2520.7 2226 63.3
Prupe.7G093800 Prunus persica HOM05D004426 ORTHO05D005417 0.0e+00 2518.8 2233 63.3
Atru.chr8.1340 Acer truncatum HOM05D004426 ORTHO05D005417 0.0e+00 2481.1 2225 63.4
GSVIVG01020162001 Vitis vinifera HOM05D004426 ORTHO05D005417 0.0e+00 2479.5 2250 62.5
FvH4_6g20410 Fragaria vesca HOM05D004426 ORTHO05D005417 0.0e+00 2477.2 2223 62.3
CiPaw.10G018400 Carya illinoinensis HOM05D004426 ORTHO05D005417 0.0e+00 2474.5 2230 63.5
Thecc.05G105900 Theobroma cacao HOM05D004426 ORTHO05D005417 0.0e+00 2471.4 2238 62.7
FAN05G1531 Fragaria x ananassa HOM05D004426 ORTHO05D005417 0.0e+00 2443.7 2251 61.4
Potri.016G069100 Populus trichocarpa HOM05D004426 ORTHO05D005417 0.0e+00 2441.0 2229 62.5
Manes.09G046200 Manihot esculenta HOM05D004426 ORTHO05D005417 0.0e+00 2437.5 2229 62.4
FAN09G4366 Fragaria x ananassa HOM05D004426 ORTHO05D005417 0.0e+00 2425.6 2286 60.5
FAN05G5173 Fragaria x ananassa HOM05D004426 ORTHO05D005417 0.0e+00 2419.8 2277 60.4
Gorai.009G393700 Gossypium raimondii HOM05D004426 ORTHO05D005417 0.0e+00 2412.5 2244 61.1
COL.COLO4_29556 Corchorus olitorius HOM05D004426 ORTHO05D005417 0.0e+00 2406.3 2227 62.1
MD14G1040500 Malus domestica HOM05D004426 ORTHO05D005417 0.0e+00 2402.5 2224 61.6
FAN02G2855 Fragaria x ananassa HOM05D004426 ORTHO05D005417 0.0e+00 2399.0 2295 59.8
Ciclev10010887m.g Citrus clementina HOM05D004426 ORTHO05D005417 0.0e+00 2367.8 2247 60.6
CANSAT64G0287 Cannabis sativa HOM05D004426 ORTHO05D005417 0.0e+00 2364.7 2226 60.6
Sabra16G0070000 Salix brachista HOM05D004426 ORTHO05D005417 0.0e+00 2348.9 2280 59.6
TWI74G0602 Tripterygium wilfordii HOM05D004426 ORTHO05D005417 0.0e+00 2343.5 2243 60.2
Dinv12344 Davidia involucrata HOM05D004426 ORTHO05D005417 0.0e+00 2265.0 2236 59.9
Eucgr.A02578 Eucalyptus grandis HOM05D004426 ORTHO05D005417 0.0e+00 2260.3 2231 58.2
Actinidia37752 Actinidia chinensis HOM05D004426 ORTHO05D005417 0.0e+00 2204.1 2244 57.8
TAR369G0229 Trochodendron aralioides HOM05D004426 ORTHO05D005417 0.0e+00 2193.3 2331 56.5
Gohir.A04G053650 Gossypium hirsutum HOM05D004426 ORTHO05D005417 0.0e+00 2114.7 2049 59.3
Gohir.D04G091700 Gossypium hirsutum HOM05D004426 ORTHO05D005417 0.0e+00 2110.9 2054 59.3
PGR004G1788 Punica granatum HOM05D004426 ORTHO05D005417 0.0e+00 2105.1 2239 55.8
MELO3C009545.2 Cucumis melo HOM05D004426 ORTHO05D005417 0.0e+00 2081.2 2239 54.8
Sed0007001 Sechium edule HOM05D004426 ORTHO05D005417 0.0e+00 2080.1 2251 54.6
ClCG10G018280 Citrullus lanatus HOM05D004426 ORTHO05D005417 0.0e+00 2073.1 2258 54.5
CsaV3_3G038030 Cucumis sativus L. HOM05D004426 ORTHO05D005417 0.0e+00 2072.4 2254 54.5
Aqoxy1G00646 Aquilegia oxysepala HOM05D004426 ORTHO05D005417 0.0e+00 2055.0 2321 53.7
THA.LOC104816640 Tarenaya hassleriana HOM05D004426 ORTHO05D005417 0.0e+00 2032.7 2231 54.1
AL3G16340 Arabidopsis lyrata HOM05D004426 ORTHO05D005417 0.0e+00 2020.0 2236 54.2
Cc06_g06650 Coffea canephora HOM05D004426 ORTHO05D005417 0.0e+00 2018.4 2238 54.1
AT3G05680 Arabidopsis thaliana HOM05D004426 ORTHO05D005417 0.0e+00 2017.7 2233 54.2
Thhalv10019873m.g Eutrema salsugineum HOM05D004426 ORTHO05D005417 0.0e+00 2016.9 2224 53.2
Nn6g34673 Nelumbo nucifera HOM05D004426 ORTHO05D005417 0.0e+00 2013.0 2305 53.3
PSO339G1314 Papaver somniferum HOM05D004426 ORTHO05D005417 0.0e+00 1989.2 2280 53.1
Dinv31767 Davidia involucrata HOM05D004426 ORTHO05D005417 0.0e+00 1984.1 1721 64.2
TAR375G1129 Trochodendron aralioides HOM05D004426 ORTHO05D005417 0.0e+00 1983.8 2191 55.3
PSO384G1970 Papaver somniferum HOM05D004426 ORTHO05D005417 0.0e+00 1978.0 2282 53.1
A03p34260 Brassica napus HOM05D004426 ORTHO05D005417 0.0e+00 1972.2 2219 52.5
CARHR080130 Cardamine hirsuta HOM05D004426 ORTHO05D005417 0.0e+00 1969.9 2231 52.4
C03p41680 Brassica napus HOM05D004426 ORTHO05D005417 0.0e+00 1963.3 2214 52.5
Sp3g04560 Schrenkiella parvula HOM05D004426 ORTHO05D005417 0.0e+00 1955.3 2233 52.3
Carub.0003s0502 Capsella rubella HOM05D004426 ORTHO05D005417 0.0e+00 1952.2 2244 52.1
EL10Ac5g11771 Beta vulgaris HOM05D004426 ORTHO05D005417 0.0e+00 1951.0 2229 53.7
BolC3t16451H Brassica oleracea HOM05D004426 ORTHO05D005417 0.0e+00 1935.6 2235 51.8
BraA03t12600Z Brassica rapa HOM05D004426 ORTHO05D005417 0.0e+00 1933.7 2235 51.8
BcaB04g19244 Brassica carinata HOM05D004426 ORTHO05D005417 0.0e+00 1932.9 2221 52.5
Sopen03g029610 Solanum pennellii HOM05D004426 ORTHO05D005417 0.0e+00 1929.8 2243 52.3
vmacro07479 Vaccinium macrocarpon HOM05D004426 ORTHO05D005417 0.0e+00 1926.0 2298 52.9
MSTRG.5892 Avicennia marina HOM05D004426 ORTHO05D005417 0.0e+00 1922.9 2231 51.9
Solyc03g020020.3 Solanum lycopersicum HOM05D004426 ORTHO05D005417 0.0e+00 1918.3 2243 51.9
Migut.J00694 Erythranthe guttata HOM05D004426 ORTHO05D005417 0.0e+00 1917.1 2251 51.4
Oeu035645.2 Olea europaea HOM05D004426 ORTHO05D005417 0.0e+00 1912.5 2228 52.4
DCAR_020696 Daucus carota HOM05D004426 ORTHO05D005417 0.0e+00 1908.6 2225 52.4
Aa31LG5G16100 Aethionema arabicum HOM05D004426 ORTHO05D005417 0.0e+00 1898.2 2240 51.5
Sc22g0002960 Simmondsia chinensis HOM05D004426 ORTHO05D005417 0.0e+00 1868.2 1917 56.5
Nitab4.5_0004363g0030 Nicotiana tabacum HOM05D004426 ORTHO05D005417 0.0e+00 1862.0 2220 51.5
AUR62040133 Chenopodium quinoa HOM05D004426 ORTHO05D005417 0.0e+00 1859.3 2176 52.8
AUR62027347 Chenopodium quinoa HOM05D004426 ORTHO05D005417 0.0e+00 1846.2 2089 53.8
Nitab4.5_0001495g0100 Nicotiana tabacum HOM05D004426 ORTHO05D005417 0.0e+00 1827.4 2275 50.5
Peaxi162Scf00171g00133 Petunia axillaris HOM05D004426 ORTHO05D005417 0.0e+00 1826.6 2189 51.6
Ah.12g059670 Amaranthus hybridus HOM05D004426 ORTHO05D005417 0.0e+00 1791.9 2234 51.0
HanXRQChr13g0398531 Helianthus annuus HOM05D004426 ORTHO05D005417 0.0e+00 1790.0 2186 51.6
SGA_v2.0_scaffold115G32146 Striga asiatica HOM05D004426 ORTHO05D005417 0.0e+00 1781.9 2223 50.4
ECA233G4189 Erigeron canadensis HOM05D004426 ORTHO05D005417 0.0e+00 1774.6 2200 51.1
Lsat_1_v5_gn_6_33801 Lactuca sativa HOM05D004426 ORTHO05D005417 0.0e+00 1734.5 2140 51.3
MD12G1041400 Malus domestica HOM05D004426 ORTHO05D005417 0.0e+00 1709.5 1388 64.6
Haze_20160 Corylus avellana HOM05D004426 ORTHO05D005417 0.0e+00 1681.8 1426 64.4
ATR0665G194 Amborella trichopoda HOM05D004426 ORTHO05D005417 0.0e+00 1637.9 2369 45.4
CSS0006601 Camellia sinensis var. sinensis HOM05D004426 ORTHO05D005417 0.0e+00 1619.0 1396 62.8
CSS0032246 Camellia sinensis var. sinensis HOM05D004426 ORTHO05D005417 0.0e+00 1615.5 1396 62.8
HPP92_005908 Vanilla planifolia HOM05D004426 ORTHO05D005417 0.0e+00 1488.0 2189 44.7
FAN14G5903 Fragaria x ananassa HOM05D004426 ORTHO05D005417 0.0e+00 1472.2 1476 59.2
Zm00001eb220020 Zea mays HOM05D004426 ORTHO05D005417 0.0e+00 1437.2 2292 43.0
Oeu036110.1 Olea europaea HOM05D004426 ORTHO05D005417 0.0e+00 1336.6 1254 59.2
FAN09G0172 Fragaria x ananassa HOM05D004426 ORTHO05D005417 0.0e+00 1239.2 1369 55.4
unitig_578.g15811 Utricularia gibba HOM05D004426 ORTHO05D005417 0.0e+00 1200.3 2242 38.8
MBI03_g28304_MAGBIO Magnolia biondii HOM05D004426 ORTHO05D005417 0.0e+00 1129.8 1613 47.4
Cpa.g.sc104.21 Carica papaya HOM05D004426 ORTHO05D005417 0.0e+00 1083.9 1239 54.2
Duzib093G0840 Durio zibethinus HOM05D004426 ORTHO05D005417 6.6e-310 1068.5 1276 52.4
Lj1A1205G57 Lonicera japonica HOM05D004426 ORTHO05D005417 3.3e-277 959.9 1409 47.1
Lj1A1205T55 Lonicera japonica HOM05D004426 ORTHO05D005417 3.3e-277 959.9 815 63.6
SHI25008 Sapria himalayana HOM05D004426 ORTHO05D000002 6.1e-263 912.5 1119 47.2
Rhsim04G0136900 Rhododendron simsii HOM05D004426 ORTHO05D005417 4.1e-235 820.1 1315 42.5
Haze_20162 Corylus avellana HOM05D004426 ORTHO05D005417 4.6e-218 763.5 859 58.1
CDE07G0138 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 1.3e-180 639.0 960 44.4
Mapoly0014s0197 Marchantia polymorpha HOM05D004426 ORTHO05D005417 7.4e-176 623.2 2464 28.8
BcaB04g19248 Brassica carinata HOM05D004426 ORTHO05D005417 1.4e-171 609.0 1068 42.9
CDE04G2905 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 3.5e-165 587.8 486 61.7
CSS0017834 Camellia sinensis var. sinensis HOM05D004426 ORTHO05D005417 1.4e-161 575.9 843 51.1
CSS0033092 Camellia sinensis var. sinensis HOM05D004426 ORTHO05D005417 5.2e-161 573.9 843 50.9
CAN.G861.37 Capsicum annuum HOM05D004426 ORTHO05D005417 5.0e-156 557.4 955 44.5
Pp3c22_17700 Physcomitrium patens HOM05D004426 ORTHO05D005417 2.9e-135 488.4 1659 28.1
SEGI_03524 Sequoiadendron giganteum HOM05D004426 ORTHO05D005417 3.9e-132 478.0 426 58.0
SEGI_22283 Sequoiadendron giganteum HOM05D004426 ORTHO05D005417 3.6e-130 471.5 1245 33.7
Duzib093G0602 Durio zibethinus HOM05D004426 ORTHO05D005417 1.4e-129 469.5 342 71.6
AagrBONN_evm.TU.Sc2ySwM_368.1933 Anthoceros agrestis HOM05D004426 ORTHO05D005417 3.2e-126 458.4 1383 28.7
Psat0s2215g0200 Pisum sativum HOM05D004426 ORTHO05D005417 9.5e-123 446.8 331 74.0
Rhsim04G0099300 Rhododendron simsii HOM05D004426 ORTHO05D005417 1.3e-116 426.4 648 43.1
Cpa.g.sc104.20 Carica papaya HOM05D004426 ORTHO05D005417 5.8e-112 411.0 902 36.4
Psat6g150080 Pisum sativum HOM05D004426 ORTHO05D005417 1.4e-110 406.4 331 69.5
CBR_g906 Chara braunii HOM05D004426 ORTHO05D005417 6.6e-92 344.4 1863 23.5
PGSC0003DMG400015284 Solanum tuberosum HOM05D004426 ORTHO05D005417 1.5e-91 343.2 280 61.4
Psat2g116240 Pisum sativum HOM05D004426 ORTHO05D005417 5.8e-88 331.3 238 77.3
MBI03_g28305_MAGBIO Magnolia biondii HOM05D004426 ORTHO05D005417 1.9e-83 316.2 305 58.7
MD12G1041200 Malus domestica HOM05D004426 ORTHO05D005417 4.3e-83 315.1 460 49.6
RcHm_v2.0_Chr3g0476171 Rosa chinensis HOM05D004426 ORTHO05D005417 1.1e-81 310.5 215 70.2
CDE04G3616 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 1.5e-80 306.6 385 46.8
TPR.G15240 Trifolium pratense HOM05D004426 ORTHO05D005417 3.4e-80 305.4 663 41.9
Psat2g053520 Pisum sativum HOM05D004426 ORTHO05D005417 2.9e-79 302.4 331 56.2
Psat2g116200 Pisum sativum HOM05D004426 ORTHO05D005417 6.7e-68 264.6 179 81.0
Actinidia03882 Actinidia chinensis HOM05D004426 ORTHO05D005417 2.8e-66 259.2 164 79.9
CDE07G0146 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 1.1e-59 237.3 153 76.5
Oeu036109.3 Olea europaea HOM05D004426 ORTHO05D005417 8.2e-58 231.1 467 40.9
Dinv31766 Davidia involucrata HOM05D004426 ORTHO05D005417 3.1e-57 229.2 472 44.5
Psat2g147520 Pisum sativum HOM05D001362 ORTHO05D001310 3.2e-54 219.2 136 80.1
Psat5g196200 Pisum sativum HOM05D004426 ORTHO05D005417 7.5e-43 181.4 130 77.7
Psat0s2215g0120 Pisum sativum HOM05D004426 ORTHO05D005417 9.7e-43 181.0 129 74.4
Actinidia03991 Actinidia chinensis HOM05D004426 ORTHO05D005417 3.1e-41 176.0 112 78.6
Os03g0554900 Oryza sativa ssp. japonica HOM05D004426 ORTHO05D005417 7.0e-41 174.9 722 34.3
Os03g0554950 Oryza sativa ssp. japonica HOM05D004426 ORTHO05D005417 1.0e-39 171.0 208 47.1
Psat5g098480 Pisum sativum HOM05D004426 ORTHO05D005417 2.2e-31 143.3 127 65.4
CDE04G0059 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 3.8e-31 142.5 329 34.7
Actinidia03883 Actinidia chinensis HOM05D004426 ORTHO05D005417 1.0e-28 134.4 549 27.1
Psat5g133160 Pisum sativum HOM05D004426 ORTHO05D005417 2.6e-27 129.8 121 66.1
CDE04G2111 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 1.8e-25 123.6 224 39.3
Psat5g196160 Pisum sativum HOM05D004426 ORTHO05D005417 2.1e-21 110.2 103 65.0
Psat2g137560 Pisum sativum HOM05D004426 ORTHO05D005417 3.0e-20 106.3 103 63.1
SHI25011 Sapria himalayana HOM05D000023 ORTHO05D000014 3.0e-20 106.3 68 70.6
arahy.Tifrunner.gnm1.ann1.71A9RU Arachis hypogaea HOM05D004426 ORTHO05D005417 7.0e-17 95.1 63 84.1
BNapus_Darmor_BZH_scaffold_118p00130 Brassica napus HOM05D004426 ORTHO05D005417 1.3e-15 90.9 226 30.5
Actinidia03993 Actinidia chinensis HOM05D004426 ORTHO05D005417 4.3e-14 85.9 111 50.5
Actinidia03884 Actinidia chinensis HOM05D004426 ORTHO05D005417 8.0e-13 81.6 123 50.4
Mapoly0074s0069 Marchantia polymorpha HOM05D004426 ORTHO05D005417 5.2e-12 79.0 133 31.6
Actinidia03885 Actinidia chinensis HOM05D004426 ORTHO05D005417 2.0e-11 77.0 58 67.2
Actinidia03992 Actinidia chinensis HOM05D004426 ORTHO05D005417 7.5e-11 75.1 78 50.0
CDE07G2012 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 2.2e-10 73.6 434 30.2
CDE04G1213 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 4.9e-10 72.4 346 33.5
Hund10806 Selenicereus undatus HOM05D008000 ORTHO05D010275 7.0e-09 68.6 61 59.0
ECA233G4409 Erigeron canadensis HOM05D004426 ORTHO05D005417 6.0e-08 65.5 53 64.2
Hund10805 Selenicereus undatus HOM05D001165 ORTHO05D000006 1.7e-07 63.9 45 68.9
arahy.Tifrunner.gnm1.ann1.U6LB1L Arachis hypogaea HOM05D046571 ORTHO05D038823 6.6e-07 62.0 98 44.9
SHI25001 Sapria himalayana HOM05D004426 ORTHO05D005417 7.3e-06 58.5 69 49.3


User provided reference genes

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