Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5P411T2 Lonicera japonica HOM05D000228 ORTHO05D036479 3.6e-45 184.5 89 100.0
Lj4P514T6 Lonicera japonica HOM05D000228 ORTHO05D004880 1.7e-39 165.6 86 94.2
Lj7A585G29 Lonicera japonica HOM05D000228 ORTHO05D004880 5.2e-36 154.1 86 87.2
Dinv22035 Davidia involucrata HOM05D000228 ORTHO05D004880 2.6e-27 125.2 83 71.1
DCAR_022342 Daucus carota HOM05D000228 ORTHO05D004880 6.3e-26 120.6 86 66.3
Haze_03043 Corylus avellana HOM05D000228 ORTHO05D004880 5.3e-25 117.5 83 62.7
GSVIVG01013491001 Vitis vinifera HOM05D000228 ORTHO05D004880 7.0e-25 117.1 86 64.0
Atru.chr12.1341 Acer truncatum HOM05D000228 ORTHO05D004880 1.2e-24 116.3 83 62.7
CSS0032728 Camellia sinensis var. sinensis HOM05D000228 ORTHO05D004880 3.5e-24 114.8 83 66.3
Hma1.2p1_1202F.1_g266790 Hydrangea macrophylla HOM05D000228 ORTHO05D004880 3.5e-24 114.8 86 60.5
TAR626G0081 Trochodendron aralioides HOM05D000228 ORTHO05D004880 4.5e-24 114.4 86 60.5
Actinidia21520 Actinidia chinensis HOM05D000228 ORTHO05D004880 5.9e-24 114.0 86 64.0
AUR62026863 Chenopodium quinoa HOM05D000228 ORTHO05D004880 1.0e-23 113.2 85 57.6
AUR62032652 Chenopodium quinoa HOM05D000228 ORTHO05D004880 1.0e-23 113.2 85 57.6
Oeu038177.1 Olea europaea HOM05D000228 ORTHO05D004880 1.3e-23 112.8 85 62.4
CiPaw.13G013500 Carya illinoinensis HOM05D000228 ORTHO05D004880 1.7e-23 112.5 83 63.9
SGA_v2.0_scaffold124G33613 Striga asiatica HOM05D000228 ORTHO05D004880 1.7e-23 112.5 85 62.4
Hund27778 Selenicereus undatus HOM05D000228 ORTHO05D004880 2.9e-23 111.7 86 57.0
Hund27781 Selenicereus undatus HOM05D000228 ORTHO05D004880 2.9e-23 111.7 86 57.0
CsaV3_5G024490 Cucumis sativus L. HOM05D000228 ORTHO05D004880 1.1e-22 109.8 86 55.8
CANSAT56G3974 Cannabis sativa HOM05D000228 ORTHO05D004880 1.5e-22 109.4 83 61.4
Sed0021971 Sechium edule HOM05D000228 ORTHO05D004880 2.5e-22 108.6 86 55.8
HanXRQChr01g0022531 Helianthus annuus HOM05D000228 ORTHO05D004880 3.2e-22 108.2 86 54.7
Lsat_1_v5_gn_7_31901 Lactuca sativa HOM05D006097 ORTHO05D004880 3.2e-22 108.2 86 58.1
SalBow5G3376 Salvia bowleyana HOM05D000228 ORTHO05D004880 4.2e-22 107.8 83 60.2
SalBow5G5050 Salvia bowleyana HOM05D000228 ORTHO05D004880 4.2e-22 107.8 83 60.2
Sed0005526 Sechium edule HOM05D000228 ORTHO05D004880 4.2e-22 107.8 86 55.8
ClCG01G007520 Citrullus lanatus HOM05D000228 ORTHO05D004880 5.5e-22 107.5 86 54.7
Cc02_g30260 Coffea canephora HOM05D000228 ORTHO05D004880 5.5e-22 107.5 86 57.0
MELO3C005153.2 Cucumis melo HOM05D000228 ORTHO05D004880 5.5e-22 107.5 86 54.7
RcHm_v2.0_Chr1g0324091 Rosa chinensis HOM05D000228 ORTHO05D004880 5.5e-22 107.5 83 60.2
EL10Ac2g02803 Beta vulgaris HOM05D000228 ORTHO05D004880 9.4e-22 106.7 83 55.4
vmacro12694 Vaccinium macrocarpon HOM05D000228 ORTHO05D004880 1.2e-21 106.3 82 62.2
Ciclev10004129m.g Citrus clementina HOM05D000228 ORTHO05D004880 2.7e-21 105.1 83 59.0
Potri.003G196900 Populus trichocarpa HOM05D000228 ORTHO05D004880 3.6e-21 104.8 82 61.0
HanXRQChr15g0481481 Helianthus annuus HOM05D000228 ORTHO05D004880 4.7e-21 104.4 86 53.5
Potri.001G027232 Populus trichocarpa HOM05D000228 ORTHO05D004880 4.7e-21 104.4 82 59.8
Ah.10g030560 Amaranthus hybridus HOM05D000228 ORTHO05D004880 8.0e-21 103.6 86 50.0
Ah.10g030570 Amaranthus hybridus HOM05D000228 ORTHO05D004880 8.0e-21 103.6 86 50.0
ECA236G0597 Erigeron canadensis HOM05D000228 ORTHO05D004880 8.0e-21 103.6 86 52.3
Manes.04G159600 Manihot esculenta HOM05D000228 ORTHO05D004880 8.0e-21 103.6 83 56.6
FAN01G1291 Fragaria x ananassa HOM05D000228 ORTHO05D004880 1.4e-20 102.8 86 55.8
Lalb_Chr01g0007761 Lupinus albus HOM05D000228 ORTHO05D004880 1.8e-20 102.4 83 53.0
Peaxi162Scf00767g00417 Petunia axillaris HOM05D000228 ORTHO05D004880 1.8e-20 102.4 84 56.0
Thecc.10G157200 Theobroma cacao HOM05D000228 ORTHO05D004880 1.8e-20 102.4 83 54.2
Eucgr.J01182 Eucalyptus grandis HOM05D000228 ORTHO05D004880 2.3e-20 102.1 86 54.7
Solyc01g096390.4 Solanum lycopersicum HOM05D000228 ORTHO05D004880 2.3e-20 102.1 84 54.8
Sopen01g040120 Solanum pennellii HOM05D000228 ORTHO05D004880 2.3e-20 102.1 84 54.8
Sabra03G0146600 Salix brachista HOM05D000228 ORTHO05D004880 3.0e-20 101.7 82 59.8
CAN.G1045.38 Capsicum annuum HOM05D000228 ORTHO05D004880 4.0e-20 101.3 84 56.0
Migut.B01227 Erythranthe guttata HOM05D000228 ORTHO05D004880 4.0e-20 101.3 85 55.3
FvH4_7g03040 Fragaria vesca HOM05D000228 ORTHO05D004880 5.2e-20 100.9 86 55.8
FAN03G2523 Fragaria x ananassa HOM05D000228 ORTHO05D004880 5.2e-20 100.9 86 55.8
FAN10G2682 Fragaria x ananassa HOM05D000228 ORTHO05D004880 5.2e-20 100.9 86 55.8
unitig_0.g1386 Utricularia gibba HOM05D000228 ORTHO05D004880 5.2e-20 100.9 86 53.5
Aqoxy7G04198 Aquilegia oxysepala HOM05D000228 ORTHO05D004880 6.8e-20 100.5 86 53.5
FAN06G4504 Fragaria x ananassa HOM05D000228 ORTHO05D004880 6.8e-20 100.5 86 55.8
arahy.Tifrunner.gnm1.ann1.50BPU8 Arachis hypogaea HOM05D000228 ORTHO05D004880 8.8e-20 100.1 83 51.8
Sc11g0006440 Simmondsia chinensis HOM05D000228 ORTHO05D004880 1.2e-19 99.8 85 51.8
MD07G1039700 Malus domestica HOM05D000228 ORTHO05D004880 1.5e-19 99.4 84 51.2
Medtr8g038990 Medicago truncatula HOM05D000228 ORTHO05D004880 1.5e-19 99.4 83 51.8
Cpa.g.sc271.2 Carica papaya HOM05D000228 ORTHO05D004880 2.0e-19 99.0 85 51.8
arahy.Tifrunner.gnm1.ann1.K566NY Arachis hypogaea HOM05D000228 ORTHO05D004880 3.4e-19 98.2 83 50.6
Glyma.15G235900 Glycine max HOM05D000228 ORTHO05D004880 3.4e-19 98.2 83 50.6
COL.COLO4_20753 Corchorus olitorius HOM05D000228 ORTHO05D004880 5.7e-19 97.4 82 50.0
Lalb_Chr03g0032731 Lupinus albus HOM05D000228 ORTHO05D004880 5.7e-19 97.4 83 48.2
PSO063G0693 Papaver somniferum HOM05D000228 ORTHO05D004880 5.7e-19 97.4 86 50.0
PSO782G2240 Papaver somniferum HOM05D000228 ORTHO05D004880 5.7e-19 97.4 86 50.0
Gohir.A06G175400 Gossypium hirsutum HOM05D000228 ORTHO05D004880 7.5e-19 97.1 82 50.0
Gohir.D06G185200 Gossypium hirsutum HOM05D000228 ORTHO05D004880 7.5e-19 97.1 82 50.0
Gorai.010G216600 Gossypium raimondii HOM05D000228 ORTHO05D004880 7.5e-19 97.1 82 50.0
Ca_23957_v3 Cicer arietinum L. HOM05D000228 ORTHO05D004880 9.8e-19 96.7 83 49.4
Ca_30885_v3 Cicer arietinum L. HOM05D005112 ORTHO05D006681 9.8e-19 96.7 83 49.4
Glyma.13G196900 Glycine max HOM05D000228 ORTHO05D004880 9.8e-19 96.7 83 51.8
MD02G1287600 Malus domestica HOM05D000228 ORTHO05D004880 9.8e-19 96.7 84 50.0
Prupe.2G035500 Prunus persica HOM05D000228 ORTHO05D004880 9.8e-19 96.7 83 49.4
Duzib114G0608 Durio zibethinus HOM05D000228 ORTHO05D004880 1.3e-18 96.3 82 48.8
PGR044G0122 Punica granatum HOM05D000228 ORTHO05D004880 1.3e-18 96.3 94 47.9
Lj3g0014961 Lotus japonicus HOM05D000228 ORTHO05D004880 1.7e-18 95.9 83 49.4
TPR.G25078 Trifolium pratense HOM05D000228 ORTHO05D004880 2.8e-18 95.1 76 53.9
Lj4A587T9 Lonicera japonica HOM05D000228 ORTHO05D036479 4.8e-18 94.4 63 79.4
Aqoxy6G01013 Aquilegia oxysepala HOM05D000228 ORTHO05D004880 6.3e-18 94.0 86 47.7
Lj3g0006268 Lotus japonicus HOM05D000228 ORTHO05D004880 3.1e-17 91.7 82 50.0
Phvul.011G206900 Phaseolus vulgaris HOM05D000228 ORTHO05D004880 4.1e-17 91.3 83 48.2
Psat4g144400 Pisum sativum HOM05D000228 ORTHO05D004880 4.1e-17 91.3 82 50.0
VMungo1127G1028 Vigna mungo HOM05D000228 ORTHO05D004880 9.1e-17 90.1 83 47.0
Nn6g31494 Nelumbo nucifera HOM05D000228 ORTHO05D004880 1.0e-15 86.7 86 46.5
Carub.0004s2219 Capsella rubella HOM05D000228 ORTHO05D004880 5.0e-15 84.3 81 48.1
AL4G37670 Arabidopsis lyrata HOM05D000228 ORTHO05D004880 6.6e-15 84.0 81 48.1
AT2G40030 Arabidopsis thaliana HOM05D000228 ORTHO05D004880 2.5e-14 82.0 81 46.9
CARHR134990 Cardamine hirsuta HOM05D000228 ORTHO05D004880 3.3e-14 81.6 82 45.1
Aa31LG5G19570 Aethionema arabicum HOM05D000228 ORTHO05D004880 2.1e-13 79.0 81 45.7
THA.LOC104809820 Tarenaya hassleriana HOM05D000228 ORTHO05D004880 4.7e-13 77.8 82 45.1
CDE02G4035 Ceratophyllum demersum HOM05D000228 ORTHO05D004880 1.0e-12 76.6 86 40.7
MBI19_g39580_MAGBIO Magnolia biondii HOM05D000228 ORTHO05D012304 1.0e-12 76.6 86 41.9
MBI06_g38706_MAGBIO Magnolia biondii HOM05D000228 ORTHO05D004880 1.8e-12 75.9 86 41.9
TWI15G0020 Tripterygium wilfordii HOM05D000228 ORTHO05D004880 5.2e-12 74.3 86 41.9
TWI38G1715 Tripterygium wilfordii HOM05D000228 ORTHO05D004880 5.2e-12 74.3 83 41.0
HPP92_010995 Vanilla planifolia HOM05D000228 ORTHO05D004880 8.9e-12 73.6 86 41.9
Thhalv10016128m.g Eutrema salsugineum HOM05D000228 ORTHO05D004880 2.6e-11 72.0 81 44.4
MBI06_g43576_MAGBIO Magnolia biondii HOM05D000228 ORTHO05D004880 2.6e-11 72.0 86 39.5
Sp4g22340 Schrenkiella parvula HOM05D000228 ORTHO05D004880 4.4e-11 71.2 83 39.8
A03p22490 Brassica napus HOM05D000228 ORTHO05D004880 9.8e-11 70.1 83 39.8
BolC3t15049H Brassica oleracea HOM05D000228 ORTHO05D004880 9.8e-11 70.1 83 39.8
BraA03t11476Z Brassica rapa HOM05D000228 ORTHO05D004880 9.8e-11 70.1 83 39.8
BcaC01g05442 Brassica carinata HOM05D000228 ORTHO05D004880 1.3e-10 69.7 83 39.8
C03p26640 Brassica napus HOM05D000228 ORTHO05D004880 1.3e-10 69.7 83 39.8
BcaB01g03594 Brassica carinata HOM05D000228 ORTHO05D004880 3.7e-10 68.2 83 38.6
BcaB02g09059 Brassica carinata HOM05D000228 ORTHO05D004880 3.7e-10 68.2 81 38.3
Zm00001eb207920 Zea mays HOM05D000228 ORTHO05D004880 5.4e-09 64.3 85 31.8
MBI06_g41726_MAGBIO Magnolia biondii HOM05D002407 ORTHO05D002476 2.3e-07 58.9 48 50.0
MBI15_g05486_MAGBIO Magnolia biondii HOM05D002407 ORTHO05D002476 2.5e-06 55.5 48 47.9


User provided reference genes

Program Settings