Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5P331T31 Lonicera japonica HOM05D002899 ORTHO05D003850 1.1e-153 546.6 277 100.0
Lj9C24T10 Lonicera japonica HOM05D002899 ORTHO05D003850 2.7e-144 515.4 276 94.2
Lj5P331T27 Lonicera japonica HOM05D002899 ORTHO05D003850 3.6e-136 488.4 276 91.3
Lju926C12T4 Lonicera japonica HOM05D002899 ORTHO05D003850 5.7e-134 481.1 276 89.5
Actinidia08787 Actinidia chinensis HOM05D002899 ORTHO05D003850 2.9e-109 399.1 277 75.1
Lj9P219T21 Lonicera japonica HOM05D002899 ORTHO05D003850 9.2e-108 394.0 221 91.4
Hma1.2p1_1059F.1_g253030 Hydrangea macrophylla HOM05D002899 ORTHO05D003850 4.3e-105 385.2 277 72.2
CSS0044416 Camellia sinensis var. sinensis HOM05D002899 ORTHO05D003850 1.2e-104 383.6 278 73.0
DCAR_022992 Daucus carota HOM05D002899 ORTHO05D003850 2.1e-104 382.9 276 72.1
Sopen10g001950 Solanum pennellii HOM05D002899 ORTHO05D003850 2.1e-104 382.9 278 73.0
Solyc10g005990.4 Solanum lycopersicum HOM05D002899 ORTHO05D003850 2.8e-104 382.5 278 72.7
Rhsim06G0232100 Rhododendron simsii HOM05D002899 ORTHO05D003850 1.4e-103 380.2 278 73.0
TAR633G0361 Trochodendron aralioides HOM05D002899 ORTHO05D003850 1.8e-103 379.8 277 71.1
PGSC0003DMG400014409 Solanum tuberosum HOM05D002899 ORTHO05D003850 2.3e-103 379.4 278 72.7
Oeu028990.1 Olea europaea HOM05D002899 ORTHO05D003850 6.8e-103 377.9 277 72.9
TAR375G0529 Trochodendron aralioides HOM05D002899 ORTHO05D003850 8.9e-103 377.5 277 70.8
Nitab4.5_0009225g0010 Nicotiana tabacum HOM05D002899 ORTHO05D003850 2.0e-102 376.3 277 71.5
CAN.G492.37 Capsicum annuum HOM05D002899 ORTHO05D003850 2.4e-100 369.4 278 71.2
Nn3g21896 Nelumbo nucifera HOM05D002899 ORTHO05D003850 9.2e-100 367.5 277 70.4
Peaxi162Scf01026g00001 Petunia axillaris HOM05D002899 ORTHO05D003850 7.8e-99 364.4 277 71.1
SGA_v2.0_scaffold39G15236 Striga asiatica HOM05D002899 ORTHO05D003850 1.1e-97 360.5 277 69.0
MBI02_g25679_MAGBIO Magnolia biondii HOM05D002899 ORTHO05D003850 1.8e-95 353.2 279 65.9
Duzib128G1532 Durio zibethinus HOM05D002899 ORTHO05D003850 4.0e-95 352.1 278 64.4
MELO3C024757.2 Cucumis melo HOM05D002899 ORTHO05D003850 1.2e-94 350.5 278 67.3
MSTRG.22435 Avicennia marina HOM05D002899 ORTHO05D003850 2.0e-94 349.7 277 67.5
Manes.09G130600 Manihot esculenta HOM05D002899 ORTHO05D003850 2.6e-94 349.4 278 65.8
HanXRQChr15g0463941 Helianthus annuus HOM05D002899 ORTHO05D003850 3.4e-94 349.0 278 68.0
COL.COLO4_33467 Corchorus olitorius HOM05D002899 ORTHO05D003850 4.4e-94 348.6 278 64.4
Cc05_g11170 Coffea canephora HOM05D002899 ORTHO05D003850 1.3e-93 347.1 277 65.7
ClCG02G007900 Citrullus lanatus HOM05D002899 ORTHO05D003850 2.2e-93 346.3 278 66.9
CsaV3_2G035840 Cucumis sativus L. HOM05D002899 ORTHO05D003850 2.9e-93 345.9 278 66.5
Thecc.05G227100 Theobroma cacao HOM05D002899 ORTHO05D003850 2.9e-93 345.9 278 64.7
Potri.013G076000 Populus trichocarpa HOM05D002899 ORTHO05D003850 1.4e-92 343.6 278 64.7
Sed0007587 Sechium edule HOM05D002899 ORTHO05D003850 1.4e-92 343.6 278 65.8
Gohir.A11G221200 Gossypium hirsutum HOM05D002899 ORTHO05D003850 5.4e-92 341.7 278 64.0
Gorai.007G247300 Gossypium raimondii HOM05D002899 ORTHO05D003850 5.4e-92 341.7 278 63.7
MSTRG.8559 Avicennia marina HOM05D002899 ORTHO05D003850 1.2e-91 340.5 277 65.3
Sabra13G0065200 Salix brachista HOM05D002899 ORTHO05D003850 1.2e-91 340.5 277 64.3
Sed0003802 Sechium edule HOM05D002899 ORTHO05D003850 1.2e-91 340.5 278 64.4
Gohir.D11G234700 Gossypium hirsutum HOM05D002899 ORTHO05D003850 1.6e-91 340.1 278 63.3
CiPaw.05G210800 Carya illinoinensis HOM05D002899 ORTHO05D003850 6.0e-91 338.2 280 64.3
Sabra19G0053900 Salix brachista HOM05D002899 ORTHO05D003850 6.0e-91 338.2 279 63.8
Atru.chr12.1814 Acer truncatum HOM05D002899 ORTHO05D003850 7.8e-91 337.8 280 65.0
CDE05G1238 Ceratophyllum demersum HOM05D002899 ORTHO05D003850 7.8e-91 337.8 279 62.7
ECA247G1085 Erigeron canadensis HOM05D002899 ORTHO05D003850 1.0e-90 337.4 278 66.2
Eucgr.G00845 Eucalyptus grandis HOM05D002899 ORTHO05D003850 1.0e-90 337.4 281 65.5
Migut.F00929 Erythranthe guttata HOM05D002899 ORTHO05D003850 3.0e-90 335.9 276 63.4
Glyma.02G073100 Glycine max HOM05D002899 ORTHO05D003850 1.3e-88 330.5 277 64.3
Potri.019G043200 Populus trichocarpa HOM05D002899 ORTHO05D003850 2.8e-88 329.3 280 62.1
TWI38G1169 Tripterygium wilfordii HOM05D002899 ORTHO05D003850 4.8e-88 328.6 281 63.0
Haze_00347 Corylus avellana HOM05D002899 ORTHO05D003850 1.4e-87 327.0 282 61.7
PGR142G0302 Punica granatum HOM05D002899 ORTHO05D003850 3.1e-87 325.9 280 63.6
Atru.chr6.914 Acer truncatum HOM05D002899 ORTHO05D003850 4.0e-87 325.5 277 62.5
Rhsim03G0225400 Rhododendron simsii HOM05D002899 ORTHO05D003850 5.3e-87 325.1 280 62.9
Cfa016110 Carpinus fangiana HOM05D002899 ORTHO05D003850 9.0e-87 324.3 283 61.5
Phvul.004G082100 Phaseolus vulgaris HOM05D002899 ORTHO05D003850 2.0e-86 323.2 277 63.5
Glyma.16G154400 Glycine max HOM05D002899 ORTHO05D003850 3.4e-86 322.4 265 64.9
Prupe.5G048700 Prunus persica HOM05D002899 ORTHO05D003850 9.9e-86 320.9 286 60.8
Lsat_1_v5_gn_9_37500 Lactuca sativa HOM05D002899 ORTHO05D003850 1.7e-85 320.1 278 64.0
MD08G1250100 Malus domestica HOM05D002899 ORTHO05D003850 1.7e-85 320.1 285 61.1
arahy.Tifrunner.gnm1.ann1.T623PT Arachis hypogaea HOM05D002899 ORTHO05D003850 2.9e-85 319.3 276 62.0
MD15G1445100 Malus domestica HOM05D002899 ORTHO05D003850 2.9e-85 319.3 285 61.4
Prupe.1G587200 Prunus persica HOM05D002899 ORTHO05D003850 1.4e-84 317.0 286 60.1
unitig_21.g20691 Utricularia gibba HOM05D002899 ORTHO05D003850 1.4e-84 317.0 278 61.5
FvH4_5g27320 Fragaria vesca HOM05D002899 ORTHO05D003850 2.4e-84 316.2 286 60.8
FAN18G3509 Fragaria x ananassa HOM05D002899 ORTHO05D003850 2.4e-84 316.2 286 60.8
Ciclev10030682m.g Citrus clementina HOM05D002899 ORTHO05D003850 3.2e-84 315.8 280 62.1
PSO339G6595 Papaver somniferum HOM05D002899 ORTHO05D003850 5.4e-84 315.1 281 60.1
PSO384G0661 Papaver somniferum HOM05D002899 ORTHO05D003850 9.3e-84 314.3 281 60.1
RcHm_v2.0_Chr7g0218481 Rosa chinensis HOM05D002899 ORTHO05D003850 9.3e-84 314.3 283 60.1
FAN08G1317 Fragaria x ananassa HOM05D002899 ORTHO05D003850 1.6e-83 313.5 283 59.7
SHI02598 Sapria himalayana HOM05D002899 ORTHO05D003850 2.7e-83 312.8 278 58.6
GSVIVG01024262001 Vitis vinifera HOM05D002899 ORTHO05D003850 3.5e-83 312.4 278 62.6
Aqoxy2G00924 Aquilegia oxysepala HOM05D002899 ORTHO05D003850 1.3e-82 310.5 279 59.5
EL10Ac2g02592 Beta vulgaris HOM05D002899 ORTHO05D003850 3.9e-82 308.9 281 61.9
AUR62030668 Chenopodium quinoa HOM05D002899 ORTHO05D003850 5.1e-82 308.5 281 62.3
Ah.12g064150 Amaranthus hybridus HOM05D002899 ORTHO05D003850 1.1e-81 307.4 281 60.9
ATR1098G071 Amborella trichopoda HOM05D002899 ORTHO05D003850 1.1e-81 307.4 287 57.5
Oeu027900.2 Olea europaea HOM05D002899 ORTHO05D003850 1.1e-81 307.4 277 62.5
Ah.12g063970 Amaranthus hybridus HOM05D002899 ORTHO05D003850 1.5e-81 307.0 282 61.3
Lj1g0022689 Lotus japonicus HOM05D002899 ORTHO05D003850 1.5e-81 307.0 272 61.4
Lalb_Chr16g0385381 Lupinus albus HOM05D002899 ORTHO05D003850 1.9e-81 306.6 249 64.3
Sc06g0010130 Simmondsia chinensis HOM05D002899 ORTHO05D003850 5.6e-81 305.1 283 59.0
AUR62024879 Chenopodium quinoa HOM05D002899 ORTHO05D003850 1.3e-80 303.9 281 60.1
Sc11g0002190 Simmondsia chinensis HOM05D002899 ORTHO05D003850 2.8e-80 302.8 283 59.0
Lalb_Chr09g0328871 Lupinus albus HOM05D002899 ORTHO05D003850 5.8e-78 295.0 277 59.9
arahy.Tifrunner.gnm1.ann1.2Q8IWK Arachis hypogaea HOM05D002899 ORTHO05D003850 1.4e-76 290.4 275 55.6
SEGI_23967 Sequoiadendron giganteum HOM05D002899 ORTHO05D003850 1.9e-76 290.0 286 54.2
TPR.G27642 Trifolium pratense HOM05D002899 ORTHO05D003850 1.9e-76 290.0 284 57.0
Ca_23166_v3 Cicer arietinum L. HOM05D002899 ORTHO05D003850 2.4e-76 289.7 276 56.5
Cpa.g.sc43.153 Carica papaya HOM05D002899 ORTHO05D003850 5.5e-76 288.5 254 61.4
THA.LOC104823791 Tarenaya hassleriana HOM05D002899 ORTHO05D003850 2.1e-75 286.6 281 55.2
Sp1g15190 Schrenkiella parvula HOM05D002899 ORTHO05D003850 3.5e-75 285.8 279 56.3
arahy.Tifrunner.gnm1.ann1.S0X35P Arachis hypogaea HOM05D002899 ORTHO05D003850 4.6e-75 285.4 275 56.4
Psat4g207720 Pisum sativum HOM05D002899 ORTHO05D003850 6.0e-75 285.0 276 55.8
Carub.0001s1679 Capsella rubella HOM05D002899 ORTHO05D003850 1.0e-74 284.3 280 55.7
AL1G29240 Arabidopsis lyrata HOM05D002899 ORTHO05D003850 1.3e-74 283.9 280 56.1
CARHR017600 Cardamine hirsuta HOM05D002899 ORTHO05D003850 3.9e-74 282.3 279 56.3
Lj9A25T22 Lonicera japonica HOM05D002899 ORTHO05D003850 5.1e-74 282.0 160 91.2
VMungo0464G0921 Vigna mungo HOM05D002899 ORTHO05D003850 6.7e-74 281.6 273 58.6
THA.LOC104805726 Tarenaya hassleriana HOM05D002899 ORTHO05D003850 1.9e-73 280.0 281 53.7
BcaC07g41444 Brassica carinata HOM05D002899 ORTHO05D003850 2.5e-73 279.6 278 56.1
BraA09t41433Z Brassica rapa HOM05D002899 ORTHO05D003850 2.5e-73 279.6 279 55.6
Medtr8g010350 Medicago truncatula HOM05D002899 ORTHO05D003850 2.5e-73 279.6 276 55.8
A09p60630 Brassica napus HOM05D002899 ORTHO05D003850 4.3e-73 278.9 279 55.2
C08p44090 Brassica napus HOM05D002899 ORTHO05D003850 5.6e-73 278.5 278 55.8
BolC8t51957H Brassica oleracea HOM05D002899 ORTHO05D003850 5.6e-73 278.5 278 55.8
Thhalv10006789m.g Eutrema salsugineum HOM05D002899 ORTHO05D003850 5.6e-73 278.5 279 54.8
AT1G17070 Arabidopsis thaliana HOM05D002899 ORTHO05D003850 1.3e-72 277.3 280 55.0
Aa31LG11G5630 Aethionema arabicum HOM05D002899 ORTHO05D003850 4.8e-72 275.4 279 54.5
HanXRQChr10g0291501 Helianthus annuus HOM05D002899 ORTHO05D003850 1.8e-71 273.5 278 55.8
arahy.Tifrunner.gnm1.ann1.VWPR3S Arachis hypogaea HOM05D002899 ORTHO05D003850 1.2e-70 270.8 247 59.5
Peaxi162Scf00017g01725 Petunia axillaris HOM05D002899 ORTHO05D003850 4.5e-70 268.9 281 58.0
Lsat_1_v5_gn_9_37520 Lactuca sativa HOM05D002899 ORTHO05D003850 7.6e-70 268.1 276 57.6
TPR.G2005 Trifolium pratense HOM05D002899 ORTHO05D003850 1.7e-69 266.9 276 54.3
TPR.G6614 Trifolium pratense HOM05D002899 ORTHO05D003850 4.9e-69 265.4 282 54.6
FAN04G0489 Fragaria x ananassa HOM05D002899 ORTHO05D003850 5.7e-65 251.9 283 51.6
ECA247G0541 Erigeron canadensis HOM05D002899 ORTHO05D003850 7.4e-65 251.5 274 52.2
AL4G40710 Arabidopsis lyrata HOM05D002899 ORTHO05D003850 1.4e-63 247.3 279 49.5
Mapoly0121s0014 Marchantia polymorpha HOM05D002899 ORTHO05D003850 3.8e-61 239.2 288 46.5
AT2G42330 Arabidopsis thaliana HOM05D002899 ORTHO05D003850 6.5e-61 238.4 279 48.0
Mapoly0085s0035 Marchantia polymorpha HOM05D002899 ORTHO05D003850 1.1e-60 237.7 290 45.5
COL.COLO4_32217 Corchorus olitorius HOM05D002899 ORTHO05D003850 2.5e-60 236.5 272 50.4
Dinv04696 Davidia involucrata HOM05D002899 ORTHO05D003850 7.9e-59 231.5 175 72.0
AagrBONN_evm.TU.Sc2ySwM_340.341 Anthoceros agrestis HOM05D002899 ORTHO05D003850 3.0e-58 229.6 290 45.5
Gorai.011G214400 Gossypium raimondii HOM05D002899 ORTHO05D003850 2.5e-57 226.5 278 48.9
Dinv36250 Davidia involucrata HOM05D002899 ORTHO05D003850 9.7e-57 224.6 280 54.6
Actinidia27037 Actinidia chinensis HOM05D002899 ORTHO05D003850 1.3e-56 224.2 180 69.4
BcaB02g06683 Brassica carinata HOM05D002899 ORTHO05D003850 1.4e-55 220.7 276 46.7
Gohir.D10G191600 Gossypium hirsutum HOM05D002899 ORTHO05D003850 1.4e-55 220.7 278 48.2
BcaC05g25671 Brassica carinata HOM05D002899 ORTHO05D003850 4.1e-55 219.2 277 48.0
Manes.09G098002 Manihot esculenta HOM05D002899 ORTHO05D003850 7.7e-54 214.9 140 76.4
Os12g0615800 Oryza sativa ssp. japonica HOM05D002899 ORTHO05D003850 7.7e-54 214.9 243 48.1
CARHR137380 Cardamine hirsuta HOM05D002899 ORTHO05D003850 1.7e-53 213.8 278 45.0
Sc09g0008530 Simmondsia chinensis HOM05D002899 ORTHO05D003850 8.5e-53 211.5 173 63.6
Cc07_g20660 Coffea canephora HOM05D002899 ORTHO05D003850 5.5e-52 208.8 280 47.5
Zm00001eb135930 Zea mays HOM05D002899 ORTHO05D003850 9.4e-52 208.0 226 48.7
BcaC07g41394 Brassica carinata HOM05D002899 ORTHO05D003850 2.6e-49 199.9 278 43.9
Pp3c22_1760 Physcomitrium patens HOM05D002899 ORTHO05D003850 5.7e-49 198.7 287 41.8
Sc09g0008570 Simmondsia chinensis HOM05D002899 ORTHO05D003850 6.3e-48 195.3 232 49.1
Pp3c19_6430 Physcomitrium patens HOM05D002899 ORTHO05D003850 1.8e-47 193.7 287 41.1
AUR62014872 Chenopodium quinoa HOM05D002899 ORTHO05D003850 5.9e-46 188.7 196 51.5
TPR.G29541 Trifolium pratense HOM05D002899 ORTHO05D003850 3.9e-42 176.0 254 41.7
SMO165G0034 Selaginella moellendorffii HOM05D002899 ORTHO05D003850 1.7e-40 170.6 279 35.8
CBR_g50354 Chara braunii HOM05D002899 ORTHO05D003850 5.3e-39 165.6 294 37.8
QL03p062784 Quercus lobata HOM05D002899 ORTHO05D003850 3.5e-38 162.9 175 52.0
QL03p066723 Quercus lobata HOM05D002899 ORTHO05D003850 3.5e-38 162.9 175 52.0
Aqoxy6G01663 Aquilegia oxysepala HOM05D002899 ORTHO05D003850 1.9e-36 157.1 113 64.6
CDE02G0573 Ceratophyllum demersum HOM05D002899 ORTHO05D003850 5.5e-36 155.6 115 63.5
HPP92_017274 Vanilla planifolia HOM05D002899 ORTHO05D003850 1.2e-35 154.5 141 61.7
QL03p062749 Quercus lobata HOM05D002899 ORTHO05D003850 1.0e-34 151.4 143 54.5
arahy.Tifrunner.gnm1.ann1.01UMM0 Arachis hypogaea HOM05D002899 ORTHO05D003850 6.7e-34 148.7 135 60.7
Eucgr.G00836 Eucalyptus grandis HOM05D002899 ORTHO05D003850 6.7e-34 148.7 152 58.6
AUR62031081 Chenopodium quinoa HOM05D002899 ORTHO05D003850 3.3e-33 146.4 169 47.9
COL.COLO4_09508 Corchorus olitorius HOM05D002899 ORTHO05D003850 1.8e-31 140.6 175 47.4
PGR031G2485 Punica granatum HOM05D002899 ORTHO05D003850 1.8e-31 140.6 258 40.7
TPR.G26966 Trifolium pratense HOM05D002899 ORTHO05D003850 3.1e-31 139.8 139 57.6
Aqoxy1G02234 Aquilegia oxysepala HOM05D002899 ORTHO05D003850 5.9e-30 135.6 135 55.6
Cre07.g325713 Chlamydomonas reinhardtii HOM05D002899 ORTHO05D003850 7.7e-30 135.2 258 32.6
TPR.G9789 Trifolium pratense HOM05D002899 ORTHO05D003850 1.3e-29 134.4 95 67.4
DCAR_011062 Daucus carota HOM05D002899 ORTHO05D003850 5.0e-29 132.5 93 69.9
HPP92_017275 Vanilla planifolia HOM05D002899 ORTHO05D003850 5.5e-28 129.0 116 50.9
Eucgr.G00703 Eucalyptus grandis HOM05D002899 ORTHO05D003850 2.7e-27 126.7 101 67.3
Aqoxy6G01664 Aquilegia oxysepala HOM05D002899 ORTHO05D003850 1.0e-26 124.8 153 51.6
C05p15450 Brassica napus HOM05D002899 ORTHO05D003850 1.0e-26 124.8 113 55.8
MCO06G176 Micromonas commoda HOM05D002899 ORTHO05D003850 4.8e-24 115.9 296 29.4
Actinidia27038 Actinidia chinensis HOM05D002899 ORTHO05D003850 1.1e-23 114.8 108 64.8
Medtr7g070290 Medicago truncatula HOM05D002899 ORTHO05D003850 1.1e-23 114.8 118 50.0
Ciclev10031700m.g Citrus clementina HOM05D002899 ORTHO05D003850 3.1e-23 113.2 132 47.0
Ciclev10018077m.g Citrus clementina HOM05D002899 ORTHO05D003850 2.7e-22 110.2 141 40.4
Lj9C25T5 Lonicera japonica HOM05D002899 ORTHO05D003850 2.7e-22 110.2 53 92.5
Ciclev10015230m.g Citrus clementina HOM05D002899 ORTHO05D003850 2.5e-20 103.6 121 44.6
Glyma.18G031866 Glycine max HOM05D002899 ORTHO05D027421 2.0e-17 94.0 77 61.0
COL.COLO4_00251 Corchorus olitorius HOM05D002899 ORTHO05D003850 9.8e-17 91.7 100 52.0
DCAR_009599 Daucus carota HOM05D002899 ORTHO05D003850 1.3e-16 91.3 50 90.0
COL.COLO4_24094 Corchorus olitorius HOM05D002899 ORTHO05D003850 1.5e-09 67.8 64 53.1
PRCOL_00003671 Prasinoderma coloniale HOM05D002899 ORTHO05D003850 1.5e-09 67.8 172 27.9
Zm00001eb426490 Zea mays HOM05D002899 ORTHO05D003850 4.4e-09 66.2 99 37.4
Actinidia24632 Actinidia chinensis HOM05D002899 ORTHO05D003850 5.4e-07 59.3 59 64.4
BolC5t30253H Brassica oleracea HOM05D002899 ORTHO05D003850 5.9e-06 55.8 54 46.3


User provided reference genes

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