Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5C681T1 Lonicera japonica HOM05D004410 ORTHO05D006134 4.6e-158 561.2 292 100.0
Lj7C624G8 Lonicera japonica HOM05D004410 ORTHO05D006134 2.9e-152 542.0 292 95.9
Dinv26445 Davidia involucrata HOM05D004410 ORTHO05D006134 1.9e-143 512.7 292 88.4
Rhsim12G0146500 Rhododendron simsii HOM05D004410 ORTHO05D006134 3.2e-143 511.9 292 87.3
Gorai.004G025800 Gossypium raimondii HOM05D004410 ORTHO05D006134 1.0e-141 506.9 291 85.9
Cpa.g.sc95.31 Carica papaya HOM05D004410 ORTHO05D006134 6.7e-141 504.2 291 85.2
Gohir.D08G028700 Gossypium hirsutum HOM05D004410 ORTHO05D006134 6.7e-141 504.2 291 85.2
Thecc.09G180400 Theobroma cacao HOM05D004410 ORTHO05D006134 1.6e-139 499.6 291 84.2
Duzib170G0185 Durio zibethinus HOM05D004410 ORTHO05D006134 2.1e-139 499.2 291 84.9
GSVIVG01010906001 Vitis vinifera HOM05D004410 ORTHO05D006134 2.1e-139 499.2 291 84.9
CSS0020745 Camellia sinensis var. sinensis HOM05D004410 ORTHO05D006134 3.7e-139 498.4 292 83.9
Gohir.A08G018100 Gossypium hirsutum HOM05D004410 ORTHO05D006134 3.7e-139 498.4 291 84.2
CAN.G65.73 Capsicum annuum HOM05D004410 ORTHO05D006134 8.1e-139 497.3 292 84.6
Eucgr.C02260 Eucalyptus grandis HOM05D004410 ORTHO05D006134 1.1e-138 496.9 291 85.2
Eucgr.L02823 Eucalyptus grandis HOM05D004410 ORTHO05D006134 1.1e-138 496.9 291 85.2
Nitab4.5_0000339g0120 Nicotiana tabacum HOM05D004410 ORTHO05D006134 1.8e-138 496.1 292 87.3
MSTRG.4318 Avicennia marina HOM05D004410 ORTHO05D006134 2.4e-138 495.7 291 85.2
TAR626G0361 Trochodendron aralioides HOM05D004410 ORTHO05D006134 4.0e-138 495.0 293 85.0
Ciclev10009088m.g Citrus clementina HOM05D004410 ORTHO05D006134 6.9e-138 494.2 291 84.2
Oeu038397.1 Olea europaea HOM05D004410 ORTHO05D006134 9.0e-138 493.8 291 84.5
COL.COLO4_23558 Corchorus olitorius HOM05D004410 ORTHO05D006134 1.2e-137 493.4 291 83.5
CiPaw.08G034000 Carya illinoinensis HOM05D004410 ORTHO05D006134 3.4e-137 491.9 291 82.5
DCAR_019823 Daucus carota HOM05D004410 ORTHO05D006134 4.5e-137 491.5 282 87.2
Cc09_g07700 Coffea canephora HOM05D004410 ORTHO05D006134 1.0e-136 490.3 291 86.6
Solyc06g072250.3 Solanum lycopersicum HOM05D004410 ORTHO05D006134 1.0e-136 490.3 292 82.5
Sopen06g028570 Solanum pennellii HOM05D004410 ORTHO05D006134 3.8e-136 488.4 292 82.2
Potri.001G338700 Populus trichocarpa HOM05D004410 ORTHO05D006134 8.4e-136 487.3 291 82.5
CSS0004658 Camellia sinensis var. sinensis HOM05D004410 ORTHO05D006134 1.1e-135 486.9 292 83.2
HanXRQChr06g0179561 Helianthus annuus HOM05D004410 ORTHO05D006134 1.4e-135 486.5 291 86.6
Manes.06G021200 Manihot esculenta HOM05D004410 ORTHO05D006134 3.2e-135 485.3 291 83.8
Cfa005486 Carpinus fangiana HOM05D004410 ORTHO05D006134 9.3e-135 483.8 291 81.8
Lsat_1_v5_gn_8_69561 Lactuca sativa HOM05D004410 ORTHO05D005614 9.3e-135 483.8 295 84.1
CANSAT56G1932 Cannabis sativa HOM05D004410 ORTHO05D006134 2.1e-134 482.6 292 80.8
PGR044G0126 Punica granatum HOM05D004410 ORTHO05D006134 2.1e-134 482.6 322 77.6
Potri.018G049800 Populus trichocarpa HOM05D004410 ORTHO05D006134 2.7e-134 482.3 291 81.8
QL11p004818 Quercus lobata HOM05D004410 ORTHO05D006134 4.6e-134 481.5 290 85.5
EL10Ac8g18319 Beta vulgaris HOM05D004410 ORTHO05D006134 1.3e-133 479.9 291 82.8
Migut.D01496 Erythranthe guttata HOM05D004410 ORTHO05D006134 2.3e-133 479.2 291 81.8
Aqoxy3G03862 Aquilegia oxysepala HOM05D004410 ORTHO05D006134 3.0e-133 478.8 291 84.2
Ah.14g083650 Amaranthus hybridus HOM05D004410 ORTHO05D006134 3.9e-133 478.4 291 81.1
Cfa013429 Carpinus fangiana HOM05D004410 ORTHO05D006134 6.7e-133 477.6 291 80.8
Sc14g0001390 Simmondsia chinensis HOM05D004410 ORTHO05D006134 1.5e-132 476.5 291 79.7
Oeu016123.1 Olea europaea HOM05D004410 ORTHO05D006134 2.5e-132 475.7 320 76.6
Sabra03G0001500 Salix brachista HOM05D004410 ORTHO05D006134 2.5e-132 475.7 305 79.0
THA.LOC104817784 Tarenaya hassleriana HOM05D004410 ORTHO05D006134 1.3e-131 473.4 292 81.2
ECA236G3126 Erigeron canadensis HOM05D004410 ORTHO05D006134 8.2e-131 470.7 291 84.2
Hund26318 Selenicereus undatus HOM05D004410 ORTHO05D006134 1.1e-130 470.3 291 79.4
SalBow8G1532 Salvia bowleyana HOM05D004410 ORTHO05D006134 3.1e-130 468.8 291 82.1
CsaV3_5G008380 Cucumis sativus L. HOM05D004410 ORTHO05D006134 1.2e-129 466.8 291 79.4
RcHm_v2.0_Chr4g0400231 Rosa chinensis HOM05D004410 ORTHO05D006134 1.2e-129 466.8 292 79.8
AUR62033248 Chenopodium quinoa HOM05D004410 ORTHO05D006134 2.6e-129 465.7 291 79.7
PSO210G4717 Papaver somniferum HOM05D004410 ORTHO05D006134 2.6e-129 465.7 293 79.9
MELO3C008596.2 Cucumis melo HOM05D004410 ORTHO05D006134 3.4e-129 465.3 291 79.4
PSO210G0218 Papaver somniferum HOM05D004410 ORTHO05D006134 3.4e-129 465.3 293 79.9
TWI75G1515 Tripterygium wilfordii HOM05D004410 ORTHO05D006134 5.9e-129 464.5 325 73.2
Nn8g40987 Nelumbo nucifera HOM05D004410 ORTHO05D006134 7.6e-129 464.2 272 84.9
TWI36G0301 Tripterygium wilfordii HOM05D004410 ORTHO05D006134 2.9e-128 462.2 291 78.4
Lalb_Chr07g0180591 Lupinus albus HOM05D004410 ORTHO05D006134 1.1e-127 460.3 291 79.0
Glyma.17G060900 Glycine max HOM05D004410 ORTHO05D006134 5.5e-127 458.0 291 79.7
arahy.Tifrunner.gnm1.ann1.FB81IM Arachis hypogaea HOM05D004410 ORTHO05D006134 1.2e-126 456.8 291 79.4
MELO3C008923.2 Cucumis melo HOM05D004410 ORTHO05D006134 3.6e-126 455.3 291 77.3
arahy.Tifrunner.gnm1.ann1.2H7I9L Arachis hypogaea HOM05D004410 ORTHO05D006134 4.6e-126 454.9 291 79.0
AUR62021333 Chenopodium quinoa HOM05D004410 ORTHO05D006134 6.1e-126 454.5 291 79.0
Peaxi162Scf00171g00233 Petunia axillaris HOM05D004410 ORTHO05D006134 6.1e-126 454.5 269 82.9
AL8G33250 Arabidopsis lyrata HOM05D004410 ORTHO05D006134 2.3e-125 452.6 291 79.4
Sp6g19010 Schrenkiella parvula HOM05D004410 ORTHO05D006134 2.3e-125 452.6 291 80.8
FvH4_4g07620 Fragaria vesca HOM05D004410 ORTHO05D006134 1.5e-124 449.9 292 80.1
CDE06G0833 Ceratophyllum demersum HOM05D004410 ORTHO05D006134 4.3e-124 448.4 291 75.6
FAN22G1351 Fragaria x ananassa HOM05D004410 ORTHO05D006134 4.3e-124 448.4 292 79.5
Thhalv10014295m.g Eutrema salsugineum HOM05D004410 ORTHO05D006134 7.4e-124 447.6 293 78.2
Aa31sc36G40 Aethionema arabicum HOM05D004410 ORTHO05D006134 2.2e-123 446.0 295 77.6
FAN07G0604 Fragaria x ananassa HOM05D004410 ORTHO05D006134 8.2e-123 444.1 292 79.1
CARHR271080 Cardamine hirsuta HOM05D004410 ORTHO05D006134 6.9e-122 441.0 293 76.1
Sabra03G0004700 Salix brachista HOM05D004410 ORTHO05D006134 6.9e-122 441.0 327 70.9
vmacro16466 Vaccinium macrocarpon HOM05D004410 ORTHO05D006134 3.4e-121 438.7 387 63.6
VMungo1215G0063 Vigna mungo HOM05D004410 ORTHO05D006134 1.3e-120 436.8 292 77.1
FAN17G1447 Fragaria x ananassa HOM05D004410 ORTHO05D006134 2.2e-120 436.0 310 74.8
Sed0003098 Sechium edule HOM05D004410 ORTHO05D006134 2.2e-120 436.0 291 74.9
unitig_26.g9274 Utricularia gibba HOM05D004410 ORTHO05D006134 2.2e-120 436.0 292 77.1
FAN12G4072 Fragaria x ananassa HOM05D004410 ORTHO05D006134 2.9e-120 435.6 312 74.7
C03p15070 Brassica napus HOM05D004410 ORTHO05D006134 5.0e-120 434.9 291 79.0
BolC3t13949H Brassica oleracea HOM05D004410 ORTHO05D006134 5.0e-120 434.9 291 79.0
Zm00001eb258180 Zea mays HOM05D004410 ORTHO05D006134 6.5e-120 434.5 294 71.1
AT5G57280 Arabidopsis thaliana HOM05D004410 ORTHO05D006134 1.1e-119 433.7 291 75.9
Ah.09g230150 Amaranthus hybridus HOM05D004410 ORTHO05D006134 1.9e-119 433.0 291 76.6
CANSAT21G0708 Cannabis sativa HOM05D004410 ORTHO05D006134 3.2e-119 432.2 291 73.2
Ca_21245_v3 Cicer arietinum L. HOM05D004410 ORTHO05D006134 3.2e-119 432.2 283 77.0
TPR.G5373 Trifolium pratense HOM05D004410 ORTHO05D006134 5.5e-119 431.4 293 76.1
Carub.0008s1778 Capsella rubella HOM05D004410 ORTHO05D006134 2.1e-118 429.5 291 74.6
PGSC0003DMG400027051 Solanum tuberosum HOM05D004410 ORTHO05D006134 1.8e-117 426.4 292 77.1
MD13G1245300 Malus domestica HOM05D004410 ORTHO05D006134 2.0e-116 422.9 292 76.4
Os02g0804300 Oryza sativa ssp. japonica HOM05D004410 ORTHO05D006134 2.0e-116 422.9 296 70.3
Prupe.1G079400 Prunus persica HOM05D004410 ORTHO05D006134 5.7e-116 421.4 292 75.7
BcaB05g22331 Brassica carinata HOM05D004410 ORTHO05D006134 6.3e-115 417.9 291 76.6
Lj3g0011551 Lotus japonicus HOM05D004410 ORTHO05D006134 6.9e-114 414.5 291 74.6
ClCG11G007510 Citrullus lanatus HOM05D004410 ORTHO05D006134 2.6e-113 412.5 291 73.9
SEGI_20363 Sequoiadendron giganteum HOM05D004410 ORTHO05D006134 2.6e-113 412.5 291 70.8
Psat0s4042g0040 Pisum sativum HOM05D004410 ORTHO05D006134 1.3e-112 410.2 291 73.9
CANSAT78G0037 Cannabis sativa HOM05D004410 ORTHO05D006134 1.7e-112 409.8 291 70.8
CANSAT78G1648 Cannabis sativa HOM05D004410 ORTHO05D006134 1.7e-112 409.8 291 70.8
MD16G1253000 Malus domestica HOM05D004410 ORTHO05D006134 6.5e-112 407.9 293 74.4
CANSAT78G1079 Cannabis sativa HOM05D004410 ORTHO05D006134 1.1e-111 407.1 291 70.1
A03p12910 Brassica napus HOM05D004410 ORTHO05D006134 1.9e-111 406.4 291 75.3
A10p17910 Brassica napus HOM05D004410 ORTHO05D006134 1.9e-111 406.4 291 75.3
Lj3g0017980 Lotus japonicus HOM05D004410 ORTHO05D006134 2.5e-111 406.0 291 73.9
Phvul.003G141775 Phaseolus vulgaris HOM05D004410 ORTHO05D006134 1.2e-110 403.7 291 73.2
Haze_21974 Corylus avellana HOM05D004410 ORTHO05D006134 3.6e-110 402.1 236 83.1
SGA_v2.0_scaffold36G14352 Striga asiatica HOM05D004410 ORTHO05D006134 1.7e-107 393.3 225 85.8
Glyma.13G099200 Glycine max HOM05D004410 ORTHO05D006134 4.8e-107 391.7 291 72.5
Mapoly0020s0093 Marchantia polymorpha HOM05D004410 ORTHO05D006134 1.4e-106 390.2 291 70.4
AagrBONN_evm.TU.Sc2ySwM_344.4914 Anthoceros agrestis HOM05D004410 ORTHO05D006134 1.8e-106 389.8 291 71.1
Pp3c12_7620 Physcomitrium patens HOM05D004410 ORTHO05D006134 4.1e-106 388.7 298 66.4
Nitab4.5_0003040g0070 Nicotiana tabacum HOM05D004410 ORTHO05D006134 5.9e-105 384.8 291 69.1
SMO367G1042 Selaginella moellendorffii HOM05D004410 ORTHO05D006134 5.5e-103 378.3 298 68.1
Nitab4.5_0000782g0050 Nicotiana tabacum HOM05D004410 ORTHO05D006134 1.8e-101 373.2 298 67.1
Actinidia40404 Actinidia chinensis HOM05D004410 ORTHO05D006134 5.2e-101 371.7 294 66.3
Medtr4g007420 Medicago truncatula HOM05D004410 ORTHO05D006134 4.4e-100 368.6 291 64.6
Dinv25402 Davidia involucrata HOM05D004410 ORTHO05D006134 4.8e-99 365.2 209 88.0
ATR0561G198 Amborella trichopoda HOM05D004410 ORTHO05D006134 9.1e-98 360.9 224 77.7
Atru.chr12.1677 Acer truncatum HOM05D004410 ORTHO05D006134 3.8e-96 355.5 291 67.0
BraA03t10599Z Brassica rapa HOM05D004410 ORTHO05D006134 5.0e-96 355.1 261 73.9
TPR.G26767 Trifolium pratense HOM05D004410 ORTHO05D006134 3.6e-94 349.0 292 62.7
SGA_v2.0_scaffold172G39079 Striga asiatica HOM05D004410 ORTHO05D006134 6.1e-94 348.2 189 89.4
Medtr4g127640 Medicago truncatula HOM05D004410 ORTHO05D006134 3.0e-93 345.9 240 73.8
CANSAT78G0098 Cannabis sativa HOM05D004410 ORTHO05D006134 4.8e-91 338.6 218 74.8
CBR_g3667 Chara braunii HOM05D004410 ORTHO05D006134 1.8e-85 320.1 286 59.1
Cre09.g398104 Chlamydomonas reinhardtii HOM05D004410 ORTHO05D006134 3.4e-84 315.8 286 59.4
CAN.G65.105 Capsicum annuum HOM05D004410 ORTHO05D006134 4.7e-78 295.4 185 77.8
MCO01G124 Micromonas commoda HOM05D004410 ORTHO05D006134 4.9e-75 285.4 297 51.5
AagrBONN_evm.TU.Sc2ySwM_344.3468 Anthoceros agrestis HOM05D004410 ORTHO05D006134 1.6e-73 280.4 188 70.7
PRCOL_00001013 Prasinoderma coloniale HOM05D004410 ORTHO05D006134 1.7e-72 276.9 298 51.7
MBI13_g31549_MAGBIO Magnolia biondii HOM05D004410 ORTHO05D006134 5.0e-72 275.4 201 69.2
Nitab4.5_0000033g0380 Nicotiana tabacum HOM05D004410 ORTHO05D006134 4.0e-69 265.8 292 53.4
Haze_27417 Corylus avellana HOM05D004410 ORTHO05D006134 3.7e-67 259.2 295 50.2
BcaC03g14169 Brassica carinata HOM05D004410 ORTHO05D006134 1.6e-57 227.3 294 48.3
C02p14420 Brassica napus HOM05D004410 ORTHO05D006134 1.6e-57 227.3 294 48.3
BolC2t07566H Brassica oleracea HOM05D004410 ORTHO05D006134 1.6e-57 227.3 294 48.3
Cfa026974 Carpinus fangiana HOM05D004410 ORTHO05D006134 2.2e-51 206.8 268 48.1
TAR383G0389 Trochodendron aralioides HOM05D004410 ORTHO05D006134 7.3e-47 191.8 103 89.3
CANSAT78G0925 Cannabis sativa HOM05D004410 ORTHO05D006134 4.4e-44 182.6 106 82.1
CANSAT78G2262 Cannabis sativa HOM05D004410 ORTHO05D006134 9.3e-42 174.9 152 59.9
Peaxi162Scf03693g00003 Petunia axillaris HOM05D004410 ORTHO05D006134 1.6e-41 174.1 229 45.9
Ca_20535_v3 Cicer arietinum L. HOM05D004410 ORTHO05D034587 1.2e-36 157.9 154 57.1
Ca_20536_v3 Cicer arietinum L. HOM05D004410 ORTHO05D034587 3.4e-36 156.4 154 56.5
Ca_30867_v3 Cicer arietinum L. HOM05D004410 ORTHO05D034587 3.4e-36 156.4 154 56.5
PSO210G2992 Papaver somniferum HOM05D004410 ORTHO05D006134 8.4e-35 151.8 85 87.1
MCO02G313 Micromonas commoda HOM05D004410 ORTHO05D006134 3.9e-32 142.9 194 39.7
CDE02G0278 Ceratophyllum demersum HOM05D004410 ORTHO05D006134 8.7e-32 141.7 108 65.7
TAR383G0746 Trochodendron aralioides HOM05D004410 ORTHO05D006134 7.4e-31 138.7 79 83.5
C03p79720 Brassica napus HOM05D004410 ORTHO05D027626 1.7e-27 127.5 73 80.8
BolC5t31886H Brassica oleracea HOM05D004410 ORTHO05D027626 1.7e-27 127.5 73 80.8
BcaC05g27254 Brassica carinata HOM05D004410 ORTHO05D027626 6.4e-27 125.6 72 80.6
A02p08640 Brassica napus HOM05D004410 ORTHO05D097625 5.6e-23 112.5 189 41.3
Glyma.17G179900 Glycine max HOM05D004410 ORTHO05D027626 7.4e-23 112.1 68 76.5
Cfa002344 Carpinus fangiana HOM05D000705 ORTHO05D004052 3.7e-22 109.8 93 65.6
Psat2g093080 Pisum sativum HOM05D000872 ORTHO05D000777 7.1e-18 95.5 60 75.0
Ca_20516_v3 Cicer arietinum L. HOM05D004410 ORTHO05D147600 2.1e-17 94.0 128 45.3
PSO724G1151 Papaver somniferum HOM05D004410 ORTHO05D305184 1.3e-14 84.7 86 55.8
Medtr4g007390 Medicago truncatula HOM05D004410 ORTHO05D006134 2.8e-14 83.6 57 68.4
PRCOL_00005471 Prasinoderma coloniale HOM05D004553 ORTHO05D005426 3.1e-13 80.1 231 30.3
GSVIVG01006242001 Vitis vinifera HOM05D004410 ORTHO05D006134 4.5e-12 76.3 56 69.6
GSVIVG01012952001 Vitis vinifera HOM05D004410 ORTHO05D439300 8.2e-06 55.5 44 54.5


User provided reference genes

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