Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5C57T13 Lonicera japonica HOM05D003521 ORTHO05D000476 0.0e+00 1615.5 946 100.0
Dinv30477 Davidia involucrata HOM05D003521 ORTHO05D000476 2.6e-287 992.3 1003 65.1
CSS0015824 Camellia sinensis var. sinensis HOM05D003521 ORTHO05D000476 8.4e-270 934.1 1014 63.4
Hma1.2p1_1195F.1_g265855 Hydrangea macrophylla HOM05D003521 ORTHO05D000476 1.1e-269 933.7 1003 61.1
Actinidia21685 Actinidia chinensis HOM05D003521 ORTHO05D000476 1.2e-268 930.2 1024 63.4
CSS0047293 Camellia sinensis var. sinensis HOM05D003521 ORTHO05D000476 1.0e-267 927.2 1003 60.5
Lj9C509G5 Lonicera japonica HOM05D003521 ORTHO05D000476 1.8e-251 873.2 1091 55.5
TWI12G1038 Tripterygium wilfordii HOM05D003521 ORTHO05D000476 4.8e-249 865.1 994 60.9
vmacro18884 Vaccinium macrocarpon HOM05D003521 ORTHO05D000476 3.1e-248 862.4 1067 58.1
Rhsim08G0223900 Rhododendron simsii HOM05D003521 ORTHO05D000476 5.3e-248 861.7 1020 59.6
GSVIVG01038690001 Vitis vinifera HOM05D003521 ORTHO05D000476 2.5e-245 852.8 986 59.0
Duzib235G1126 Durio zibethinus HOM05D003521 ORTHO05D000476 1.2e-244 850.5 1006 59.3
Duzib160G0549 Durio zibethinus HOM05D003521 ORTHO05D000476 2.3e-243 846.3 1006 58.0
Dinv38015 Davidia involucrata HOM05D003521 ORTHO05D000476 9.7e-242 840.9 762 68.8
TWI18G0852 Tripterygium wilfordii HOM05D003521 ORTHO05D000476 1.1e-240 837.4 994 60.0
CiPaw.01G235400 Carya illinoinensis HOM05D003521 ORTHO05D000476 2.0e-239 833.2 1032 58.1
TAR626G0208 Trochodendron aralioides HOM05D003521 ORTHO05D000476 1.1e-237 827.4 990 57.1
QL05p021582 Quercus lobata HOM05D003521 ORTHO05D000476 6.1e-236 821.6 1033 57.5
Thecc.06G092900 Theobroma cacao HOM05D003521 ORTHO05D000476 1.4e-235 820.5 1008 57.4
MD09G1208900 Malus domestica HOM05D003521 ORTHO05D000476 4.0e-235 818.9 1026 57.9
TAR383G0706 Trochodendron aralioides HOM05D003521 ORTHO05D000476 8.8e-235 817.8 1003 55.7
Ciclev10024803m.g Citrus clementina HOM05D003521 ORTHO05D000476 4.8e-233 812.0 1009 57.4
CiPaw.02G148500 Carya illinoinensis HOM05D003521 ORTHO05D000476 2.2e-230 803.1 1051 55.2
RcHm_v2.0_Chr2g0139071 Rosa chinensis HOM05D003521 ORTHO05D000476 8.0e-228 794.7 1079 51.6
Eucgr.F03041 Eucalyptus grandis HOM05D003521 ORTHO05D000476 3.4e-226 789.3 1015 55.1
FvH4_6g31822 Fragaria vesca HOM05D003521 ORTHO05D000476 7.5e-226 788.1 1087 52.7
Atru.chr1.3345 Acer truncatum HOM05D003521 ORTHO05D000476 1.7e-225 786.9 1007 57.4
FAN02G3342 Fragaria x ananassa HOM05D003521 ORTHO05D000476 6.3e-225 785.0 1086 51.5
COL.COLO4_30440 Corchorus olitorius HOM05D003521 ORTHO05D000476 1.4e-224 783.9 972 57.9
FAN14G2596 Fragaria x ananassa HOM05D003521 ORTHO05D000476 2.4e-224 783.1 1079 51.8
Potri.003G052100 Populus trichocarpa HOM05D003521 ORTHO05D000476 5.4e-224 781.9 1015 54.4
Nitab4.5_0010600g0010 Nicotiana tabacum HOM05D003521 ORTHO05D000476 1.2e-223 780.8 1071 51.4
MD17G1190500 Malus domestica HOM05D003521 ORTHO05D000476 1.6e-223 780.4 1024 56.6
Manes.11G037600 Manihot esculenta HOM05D003521 ORTHO05D000476 1.6e-223 780.4 997 57.6
Cc04_g03000 Coffea canephora HOM05D003521 ORTHO05D000476 7.7e-223 778.1 1028 56.5
Sabra03G0027000 Salix brachista HOM05D003521 ORTHO05D000476 3.8e-222 775.8 1030 56.2
Gohir.D10G069800 Gossypium hirsutum HOM05D003521 ORTHO05D000476 5.0e-222 775.4 1004 56.2
Haze_16353 Corylus avellana HOM05D003521 ORTHO05D000476 6.6e-222 775.0 1189 50.2
Peaxi162Scf00207g01030 Petunia axillaris HOM05D003521 ORTHO05D000476 1.5e-221 773.9 1052 53.0
Gohir.A10G081600 Gossypium hirsutum HOM05D003521 ORTHO05D000476 2.5e-221 773.1 1004 56.4
Nitab4.5_0000351g0100 Nicotiana tabacum HOM05D003521 ORTHO05D000476 2.8e-220 769.6 1061 50.8
FAN05G3380 Fragaria x ananassa HOM05D003521 ORTHO05D000476 1.4e-219 767.3 1091 51.0
Sc18g0003130 Simmondsia chinensis HOM05D003521 ORTHO05D000476 1.4e-219 767.3 1018 54.2
CANSAT56G3073 Cannabis sativa HOM05D003521 ORTHO05D000476 5.2e-219 765.4 1040 55.0
Gohir.D05G131500 Gossypium hirsutum HOM05D003521 ORTHO05D000476 6.8e-219 765.0 1005 56.4
Gorai.011G074100 Gossypium raimondii HOM05D003521 ORTHO05D000476 3.4e-218 762.7 1004 55.6
Potri.001G185050 Populus trichocarpa HOM05D003521 ORTHO05D000476 9.8e-218 761.1 1024 54.5
Gorai.009G135200 Gossypium raimondii HOM05D003521 ORTHO05D000476 2.2e-217 760.0 1000 56.3
Nn2g11676 Nelumbo nucifera HOM05D003521 ORTHO05D000476 2.9e-217 759.6 1056 51.9
VMungo1080G0951 Vigna mungo HOM05D003521 ORTHO05D000476 8.3e-217 758.1 1022 52.3
Nn3g18099 Nelumbo nucifera HOM05D003521 ORTHO05D000476 3.2e-216 756.1 999 53.6
Lj3g0009081 Lotus japonicus HOM05D003521 ORTHO05D000476 7.0e-216 755.0 1038 53.3
Prupe.3G066400 Prunus persica HOM05D003521 ORTHO05D000476 1.6e-215 753.8 1026 52.3
Lalb_Chr24g0395951 Lupinus albus HOM05D003521 ORTHO05D000476 4.6e-215 752.3 1032 52.1
AL2G41720 Arabidopsis lyrata HOM05D003521 ORTHO05D000476 5.0e-214 748.8 1013 52.3
Lalb_Chr14g0373191 Lupinus albus HOM05D003521 ORTHO05D000476 8.6e-214 748.0 1022 51.6
Glyma.15G016700 Glycine max HOM05D003521 ORTHO05D000476 9.5e-213 744.6 1019 53.6
Medtr2g101700 Medicago truncatula HOM05D003521 ORTHO05D000476 2.1e-212 743.4 1032 54.3
Gohir.A05G132400 Gossypium hirsutum HOM05D003521 ORTHO05D000476 4.7e-212 742.3 1000 55.4
Phvul.005G169100 Phaseolus vulgaris HOM05D003521 ORTHO05D000476 2.3e-211 740.0 1028 54.4
Carub.0002s2767 Capsella rubella HOM05D003521 ORTHO05D000476 1.2e-210 737.6 999 54.1
AT1G79830 Arabidopsis thaliana HOM05D003521 ORTHO05D000476 2.6e-210 736.5 1015 51.6
Hund00648 Selenicereus undatus HOM05D003521 ORTHO05D000476 5.8e-210 735.3 1045 52.8
THA.LOC104812525 Tarenaya hassleriana HOM05D003521 ORTHO05D000476 1.3e-209 734.2 1019 51.9
Lsat_1_v5_gn_1_35300 Lactuca sativa HOM05D003521 ORTHO05D000476 1.7e-209 733.8 1024 54.4
DCAR_016209 Daucus carota HOM05D003521 ORTHO05D000476 2.2e-209 733.4 997 55.3
Aqoxy7G01582 Aquilegia oxysepala HOM05D003521 ORTHO05D000476 6.4e-209 731.9 1012 52.2
Sp5g35930 Schrenkiella parvula HOM05D003521 ORTHO05D000476 1.4e-208 730.7 1017 50.8
Ca_01135_v3 Cicer arietinum L. HOM05D003521 ORTHO05D000476 2.4e-208 729.9 1045 52.1
Glyma.13G356900 Glycine max HOM05D003521 ORTHO05D000476 4.1e-208 729.2 1020 53.8
SGA_v2.0_scaffold4G02009 Striga asiatica HOM05D003521 ORTHO05D000476 1.3e-206 724.2 1034 52.5
AUR62016491 Chenopodium quinoa HOM05D003521 ORTHO05D000476 6.6e-206 721.8 1012 53.5
Thhalv10018077m.g Eutrema salsugineum HOM05D003521 ORTHO05D000476 4.3e-205 719.2 1009 51.1
Psat5g297520 Pisum sativum HOM05D003521 ORTHO05D000476 7.3e-205 718.4 1059 52.0
Migut.I00939 Erythranthe guttata HOM05D003521 ORTHO05D000476 1.6e-204 717.2 1035 50.8
SalBow7G4780 Salvia bowleyana HOM05D003521 ORTHO05D000476 2.8e-204 716.5 1052 51.0
EL10Ac9g22035 Beta vulgaris HOM05D003521 ORTHO05D000476 8.1e-204 714.9 1023 51.4
AUR62011668 Chenopodium quinoa HOM05D003521 ORTHO05D000476 8.1e-204 714.9 1027 50.8
Aa31LG4G110 Aethionema arabicum HOM05D003521 ORTHO05D000476 6.8e-203 711.8 1046 51.6
Migut.D01015 Erythranthe guttata HOM05D003521 ORTHO05D000476 6.8e-203 711.8 1008 53.4
C06p28740 Brassica napus HOM05D003521 ORTHO05D000476 3.4e-202 709.5 1007 50.9
CARHR143590 Cardamine hirsuta HOM05D003521 ORTHO05D000476 3.4e-202 709.5 1020 50.5
HanXRQChr10g0313461 Helianthus annuus HOM05D003521 ORTHO05D000476 4.4e-202 709.1 988 51.7
BraA07t30279Z Brassica rapa HOM05D003521 ORTHO05D000476 5.8e-202 708.8 1012 51.1
BolC6t38043H Brassica oleracea HOM05D003521 ORTHO05D000476 1.7e-201 707.2 1009 51.1
Sabra01G0155200 Salix brachista HOM05D003521 ORTHO05D000476 8.3e-201 704.9 1010 52.4
A07p26350 Brassica napus HOM05D003521 ORTHO05D000476 2.7e-199 699.9 996 50.6
ECA247G0039 Erigeron canadensis HOM05D003521 ORTHO05D000476 3.5e-199 699.5 1044 50.8
PGR102G1144 Punica granatum HOM05D003521 ORTHO05D000476 2.5e-197 693.3 998 52.3
MSTRG.22661 Avicennia marina HOM05D003521 ORTHO05D000476 7.3e-197 691.8 997 53.3
HanXRQChr12g0360801 Helianthus annuus HOM05D003521 ORTHO05D000476 7.3e-197 691.8 979 53.2
ECA234G0658 Erigeron canadensis HOM05D003521 ORTHO05D000476 1.2e-196 691.0 996 51.5
arahy.Tifrunner.gnm1.ann1.ZR40ID Arachis hypogaea HOM05D003521 ORTHO05D000476 2.1e-196 690.3 1026 51.5
Actinidia24741 Actinidia chinensis HOM05D003521 ORTHO05D000476 6.8e-195 685.3 1002 50.5
Sopen06g024880 Solanum pennellii HOM05D003521 ORTHO05D000476 2.0e-194 683.7 1061 49.1
Lalb_Chr04g0262811 Lupinus albus HOM05D003521 ORTHO05D000476 2.6e-194 683.3 1048 49.1
MELO3C023279.2 Cucumis melo HOM05D003521 ORTHO05D000476 5.8e-194 682.2 1050 50.7
HanXRQChr04g0096181 Helianthus annuus HOM05D003521 ORTHO05D000476 2.2e-193 680.2 1025 49.3
Lsat_1_v5_gn_5_130960 Lactuca sativa HOM05D003521 ORTHO05D000476 2.2e-193 680.2 993 54.2
arahy.Tifrunner.gnm1.ann1.A5WQDM Arachis hypogaea HOM05D003521 ORTHO05D000476 1.9e-192 677.2 836 54.1
Sed0014905 Sechium edule HOM05D003521 ORTHO05D000476 3.2e-192 676.4 1053 50.0
Hund06634 Selenicereus undatus HOM05D003521 ORTHO05D000476 7.1e-192 675.2 1049 47.4
arahy.Tifrunner.gnm1.ann1.60NISA Arachis hypogaea HOM05D003521 ORTHO05D000476 3.5e-191 672.9 836 53.9
Sed0003107 Sechium edule HOM05D003521 ORTHO05D000476 1.3e-190 671.0 1053 48.1
CAN.G1152.8 Capsicum annuum HOM05D003521 ORTHO05D000476 5.1e-190 669.1 1051 48.8
SGA_v2.0_scaffold68G22978 Striga asiatica HOM05D003521 ORTHO05D000476 5.1e-190 669.1 1031 49.3
Solyc06g066610.4 Solanum lycopersicum HOM05D003521 ORTHO05D000476 1.1e-189 667.9 1063 48.3
ClCG02G000820 Citrullus lanatus HOM05D003521 ORTHO05D000476 3.8e-185 652.9 1054 47.5
CsaV3_2G017940 Cucumis sativus L. HOM05D003521 ORTHO05D000476 2.7e-183 646.7 1053 48.5
PSO386G0042 Papaver somniferum HOM05D003521 ORTHO05D000476 4.3e-181 639.4 1024 47.9
arahy.Tifrunner.gnm1.ann1.M6JGC2 Arachis hypogaea HOM05D003521 ORTHO05D000476 7.6e-178 628.6 1025 50.7
PSO210G6795 Papaver somniferum HOM05D003521 ORTHO05D000476 1.6e-175 620.9 1019 46.7
unitig_62.g23765 Utricularia gibba HOM05D003521 ORTHO05D000476 4.3e-173 612.8 999 46.7
ECA232G1585 Erigeron canadensis HOM05D003521 ORTHO05D000142 2.6e-170 603.6 987 49.8
ATR0315G089 Amborella trichopoda HOM05D003521 ORTHO05D000476 2.5e-165 587.0 1005 46.3
CDE02G1875 Ceratophyllum demersum HOM05D003521 ORTHO05D000476 1.4e-163 581.3 1017 46.0
Zm00001eb295600 Zea mays HOM05D003521 ORTHO05D000476 1.7e-161 574.3 1071 43.7
Os05g0559900 Oryza sativa ssp. japonica HOM05D003521 ORTHO05D000476 1.3e-150 538.1 1077 41.9
HanXRQChr16g0500841 Helianthus annuus HOM05D003521 ORTHO05D000476 2.3e-142 510.8 960 43.9
SHI10997 Sapria himalayana HOM05D003521 ORTHO05D000476 9.1e-139 498.8 1106 39.5
Mapoly0013s0180 Marchantia polymorpha HOM05D003521 ORTHO05D000476 5.9e-130 469.5 1026 40.2
Cpa.g.sc1513.1 Carica papaya HOM05D003521 ORTHO05D000476 1.0e-129 468.8 448 67.4
Pp3c12_5050 Physcomitrium patens HOM05D003521 ORTHO05D000476 1.7e-124 451.4 994 40.7
CDE08G0748 Ceratophyllum demersum HOM05D003521 ORTHO05D000476 3.2e-112 410.6 812 43.0
AagrBONN_evm.TU.Sc2ySwM_344.1927 Anthoceros agrestis HOM05D003521 ORTHO05D000476 2.9e-105 387.5 983 39.0
HPP92_003835 Vanilla planifolia HOM05D003521 ORTHO05D000476 1.9e-104 384.8 550 50.0
Pp3c4_15860 Physcomitrium patens HOM05D003521 ORTHO05D000476 5.9e-98 363.2 826 39.8
Zm00001eb343520 Zea mays HOM05D003521 ORTHO05D000476 7.5e-93 346.3 334 63.8
CBR_g16051 Chara braunii HOM05D003521 ORTHO05D000476 2.7e-90 337.8 1015 33.7
Oeu024073.1 Olea europaea HOM05D003521 ORTHO05D000476 2.1e-71 275.0 564 42.7
unitig_46.g18558 Utricularia gibba HOM05D003521 ORTHO05D000476 1.9e-59 235.3 469 41.6
CAN.G395.28 Capsicum annuum HOM05D003521 ORTHO05D000476 5.3e-54 217.2 282 56.4
TPR.G5155 Trifolium pratense HOM05D003521 ORTHO05D000476 3.5e-50 204.5 137 83.9
Lsat_1_v5_gn_4_102620 Lactuca sativa HOM05D003521 ORTHO05D000476 3.0e-41 174.9 135 76.3
CDE08G0544 Ceratophyllum demersum HOM05D003521 ORTHO05D000476 1.7e-36 159.1 142 67.6
Ca_01143_v3 Cicer arietinum L. HOM05D003521 ORTHO05D000476 1.7e-36 159.1 314 43.6
Lsat_1_v5_gn_4_102580 Lactuca sativa HOM05D003521 ORTHO05D000476 2.1e-34 152.1 419 35.6
Ca_25389_v3 Cicer arietinum L. HOM05D003521 ORTHO05D000476 7.9e-34 150.2 231 48.9
Oeu024072.1 Olea europaea HOM05D003521 ORTHO05D000476 3.0e-33 148.3 374 38.2
Cpa.g.c33209.1 Carica papaya HOM05D003521 ORTHO05D000476 1.9e-32 145.6 388 37.9
Zm00001eb343530 Zea mays HOM05D003521 ORTHO05D000476 4.3e-32 144.4 492 33.3
CAN.G135.35 Capsicum annuum HOM05D003521 ORTHO05D000476 2.0e-29 135.6 175 52.6
SEGI_27505 Sequoiadendron giganteum HOM05D003521 ORTHO05D000476 1.3e-28 132.9 426 34.7
TPR.G19044 Trifolium pratense HOM05D003521 ORTHO05D000476 5.1e-25 120.9 75 89.3
Cpa.g.c29821 Carica papaya HOM05D003521 ORTHO05D000476 2.0e-24 119.0 188 48.4
SMO298G0028 Selaginella moellendorffii HOM05D003521 ORTHO05D000476 3.3e-24 118.2 332 33.4
CARHR143550 Cardamine hirsuta HOM05D003521 ORTHO05D000476 3.1e-22 111.7 259 39.8
HanXRQChr11g0325911 Helianthus annuus HOM05D003521 ORTHO05D000476 6.9e-22 110.5 84 73.8
MELO3C034685.2 Cucumis melo HOM05D003521 ORTHO05D000476 3.4e-21 108.2 147 48.3
Lsat_1_v5_gn_4_178240 Lactuca sativa HOM05D003521 ORTHO05D000476 7.7e-21 107.1 172 46.5
Cre03.g187000 Chlamydomonas reinhardtii HOM05D003521 ORTHO05D000476 1.7e-20 105.9 383 30.3
Ca_31247_v3 Cicer arietinum L. HOM05D003521 ORTHO05D000476 1.7e-20 105.9 73 83.6
Medtr2g043010 Medicago truncatula HOM05D003521 ORTHO05D000476 1.9e-19 102.4 107 59.8
unitig_52.g17085 Utricularia gibba HOM05D003521 ORTHO05D000476 3.2e-19 101.7 166 48.2
Actinidia32725 Actinidia chinensis HOM05D003521 ORTHO05D000476 4.7e-18 97.8 167 44.3
Lsat_1_v5_gn_4_102600 Lactuca sativa HOM05D003521 ORTHO05D000476 4.7e-18 97.8 71 77.5
Dinv38016 Davidia involucrata HOM05D003521 ORTHO05D000476 2.0e-16 92.4 119 52.1
AagrBONN_evm.TU.Sc2ySwM_344.1934 Anthoceros agrestis HOM05D003521 ORTHO05D000476 1.3e-15 89.7 331 30.5
HanXRQChr16g0500831 Helianthus annuus HOM05D003521 ORTHO05D000476 2.2e-15 89.0 57 78.9
Ca_16259_v3 Cicer arietinum L. HOM05D001034 ORTHO05D000476 1.1e-14 86.7 77 71.4
Lsat_1_v5_gn_2_62580 Lactuca sativa HOM05D003521 ORTHO05D000476 1.1e-14 86.7 60 80.0
BolC1t05061H Brassica oleracea HOM05D003521 ORTHO05D000476 3.1e-14 85.1 70 70.0
PSO596G0006 Papaver somniferum HOM05D003521 ORTHO05D000476 4.1e-14 84.7 65 75.4
PSO596G0043 Papaver somniferum HOM05D003521 ORTHO05D000476 4.1e-14 84.7 65 75.4
TPR.G7293 Trifolium pratense HOM05D003521 ORTHO05D000476 7.0e-14 84.0 129 48.1
arahy.Tifrunner.gnm1.ann1.J2PPD0 Arachis hypogaea HOM05D003521 ORTHO05D000476 4.5e-13 81.3 74 64.9
PRCOL_00000677 Prasinoderma coloniale HOM05D003521 ORTHO05D000476 8.5e-12 77.0 912 23.7
C09p10740 Brassica napus HOM05D003521 ORTHO05D000476 2.7e-10 72.0 70 62.9
arahy.Tifrunner.gnm1.ann1.SA7FDN Arachis hypogaea HOM05D003521 ORTHO05D000476 1.4e-09 69.7 42 81.0
MCO14G500 Micromonas commoda HOM05D003521 ORTHO05D000476 1.8e-09 69.3 506 28.9
AagrBONN_evm.TU.Sc2ySwM_344.1936 Anthoceros agrestis HOM05D003521 ORTHO05D000476 4.4e-08 64.7 163 38.7


User provided reference genes

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