Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5C390T4 Lonicera japonica HOM05D001999 ORTHO05D001994 1.7e-51 205.7 102 100.0
Lj5A389T59 Lonicera japonica HOM05D001999 ORTHO05D001994 1.0e-35 153.3 88 86.4
Nitab4.5_0010216g0020 Nicotiana tabacum HOM05D001999 ORTHO05D001994 1.1e-29 133.3 99 72.7
Solyc01g099790.3 Solanum lycopersicum HOM05D001999 ORTHO05D001994 1.4e-29 132.9 98 72.4
Sopen01g043310 Solanum pennellii HOM05D001999 ORTHO05D001994 1.4e-29 132.9 98 72.4
PGSC0003DMG400024717 Solanum tuberosum HOM05D001999 ORTHO05D001994 1.4e-29 132.9 98 72.4
Lj5C396G7 Lonicera japonica HOM05D001999 ORTHO05D001994 1.8e-29 132.5 93 76.3
CSS0044976 Camellia sinensis var. sinensis HOM05D001999 ORTHO05D001994 7.0e-29 130.6 98 70.4
CSS0046081 Camellia sinensis var. sinensis HOM05D001999 ORTHO05D001994 7.0e-29 130.6 98 70.4
Dinv40334 Davidia involucrata HOM05D001999 ORTHO05D001994 7.0e-29 130.6 98 70.4
Lj5C391G14 Lonicera japonica HOM05D001999 ORTHO05D001994 9.1e-29 130.2 98 74.5
Dinv30819 Davidia involucrata HOM05D001999 ORTHO05D001994 1.2e-28 129.8 98 72.4
Cc02_g34200 Coffea canephora HOM05D001999 ORTHO05D001994 8.6e-27 123.6 98 66.3
Peaxi162Scf00037g01221 Petunia axillaris HOM05D001999 ORTHO05D001994 2.5e-26 122.1 99 67.7
Actinidia21498 Actinidia chinensis HOM05D001999 ORTHO05D001994 9.5e-26 120.2 98 67.3
Actinidia35557 Actinidia chinensis HOM05D001999 ORTHO05D001994 9.5e-26 120.2 99 64.6
CSS0018606 Camellia sinensis var. sinensis HOM05D001999 ORTHO05D001994 3.6e-25 118.2 99 67.7
CSS0039587 Camellia sinensis var. sinensis HOM05D001999 ORTHO05D001994 3.6e-25 118.2 99 67.7
Peaxi162Scf00071g00544 Petunia axillaris HOM05D001999 ORTHO05D001994 3.6e-25 118.2 99 64.6
QL03p020135 Quercus lobata HOM05D001999 ORTHO05D001994 8.0e-25 117.1 100 66.0
Prupe.6G320100 Prunus persica HOM05D001999 ORTHO05D001994 1.4e-24 116.3 100 65.0
Actinidia19777 Actinidia chinensis HOM05D001999 ORTHO05D001994 3.0e-24 115.2 98 65.3
MD04G1199600 Malus domestica HOM05D001999 ORTHO05D001994 4.0e-24 114.8 100 64.0
Potri.013G015600 Populus trichocarpa HOM05D001999 ORTHO05D001994 5.2e-24 114.4 100 63.0
RcHm_v2.0_Chr3g0455821 Rosa chinensis HOM05D001999 ORTHO05D001994 6.8e-24 114.0 100 63.0
Gohir.D13G180200 Gossypium hirsutum HOM05D001999 ORTHO05D001994 8.9e-24 113.6 99 62.6
Gorai.013G205600 Gossypium raimondii HOM05D001999 ORTHO05D001994 8.9e-24 113.6 99 62.6
MD12G1212400 Malus domestica HOM05D001999 ORTHO05D001994 1.2e-23 113.2 100 65.0
Thecc.05G313600 Theobroma cacao HOM05D001999 ORTHO05D001994 1.2e-23 113.2 100 61.0
Atru.chr2.75 Acer truncatum HOM05D001999 ORTHO05D001994 1.5e-23 112.8 95 67.4
CiPaw.08G161600 Carya illinoinensis HOM05D001999 ORTHO05D001994 2.0e-23 112.5 101 67.3
Gohir.A13G174400 Gossypium hirsutum HOM05D001999 ORTHO05D001994 2.6e-23 112.1 99 61.6
Duzib177G1061 Durio zibethinus HOM05D001999 ORTHO05D001994 3.4e-23 111.7 100 61.0
FAN05G1277 Fragaria x ananassa HOM05D001999 ORTHO05D001994 3.4e-23 111.7 100 61.0
FAN09G2669 Fragaria x ananassa HOM05D001999 ORTHO05D001994 3.4e-23 111.7 100 61.0
FvH4_6g06620 Fragaria vesca HOM05D001999 ORTHO05D001994 4.4e-23 111.3 100 61.0
FAN02G3011 Fragaria x ananassa HOM05D001999 ORTHO05D001994 4.4e-23 111.3 100 61.0
FAN14G1734 Fragaria x ananassa HOM05D001999 ORTHO05D001994 4.4e-23 111.3 100 61.0
AUR62005212 Chenopodium quinoa HOM05D001999 ORTHO05D001994 7.5e-23 110.5 99 57.6
Rhsim05G0138600 Rhododendron simsii HOM05D001999 ORTHO05D001994 7.5e-23 110.5 100 63.0
Cfa006634 Carpinus fangiana HOM05D001999 ORTHO05D001994 9.8e-23 110.2 100 63.0
AUR62000756 Chenopodium quinoa HOM05D001999 ORTHO05D001994 1.3e-22 109.8 99 58.6
Gorai.007G300400 Gossypium raimondii HOM05D001999 ORTHO05D001994 1.3e-22 109.8 100 63.0
Haze_04134 Corylus avellana HOM05D001999 ORTHO05D001994 2.8e-22 108.6 100 62.0
CiPaw.07G022200 Carya illinoinensis HOM05D001999 ORTHO05D001994 3.7e-22 108.2 99 64.6
Sabra13G0013700 Salix brachista HOM05D001999 ORTHO05D001994 3.7e-22 108.2 100 60.0
Sabra13G0017800 Salix brachista HOM05D001999 ORTHO05D001994 3.7e-22 108.2 100 60.0
Ciclev10001227m.g Citrus clementina HOM05D001999 ORTHO05D001994 6.3e-22 107.5 105 60.0
Potri.005G024700 Populus trichocarpa HOM05D001999 ORTHO05D001994 1.1e-21 106.7 100 61.0
EL10Ac4g09908 Beta vulgaris HOM05D001999 ORTHO05D001994 1.4e-21 106.3 99 58.6
vmacro19742 Vaccinium macrocarpon HOM05D001999 ORTHO05D001994 2.4e-21 105.5 100 59.0
Hund07102 Selenicereus undatus HOM05D001999 ORTHO05D001994 9.2e-21 103.6 101 57.4
Glyma.10G151500 Glycine max HOM05D001999 ORTHO05D001994 1.2e-20 103.2 100 59.0
Manes.08G117000 Manihot esculenta HOM05D001999 ORTHO05D001994 1.2e-20 103.2 99 57.6
Phvul.007G197300 Phaseolus vulgaris HOM05D001999 ORTHO05D001994 2.7e-20 102.1 97 58.8
Lj9C146G5 Lonicera japonica HOM05D001999 ORTHO05D001994 3.5e-20 101.7 97 57.7
Manes.09G170900 Manihot esculenta HOM05D001999 ORTHO05D001994 4.5e-20 101.3 99 59.6
Nitab4.5_0003844g0010 Nicotiana tabacum HOM05D001999 ORTHO05D001994 4.5e-20 101.3 96 65.6
Sabra05G0030100 Salix brachista HOM05D001999 ORTHO05D001994 4.5e-20 101.3 100 58.0
Gorai.013G126200 Gossypium raimondii HOM05D001999 ORTHO05D001994 1.0e-19 100.1 105 55.2
Lalb_Chr06g0167721 Lupinus albus HOM05D001999 ORTHO05D001994 1.0e-19 100.1 97 59.8
PGR083G1363 Punica granatum HOM05D001999 ORTHO05D001994 1.0e-19 100.1 100 54.0
Glyma.19G232800 Glycine max HOM05D001999 ORTHO05D001994 1.7e-19 99.4 97 61.9
GSVIVG01031134001 Vitis vinifera HOM05D001999 ORTHO05D001994 1.7e-19 99.4 97 60.8
arahy.Tifrunner.gnm1.ann1.J3YIB3 Arachis hypogaea HOM05D001999 ORTHO05D001994 2.3e-19 99.0 97 59.8
Cpa.g.sc327.4 Carica papaya HOM05D001999 ORTHO05D001994 2.3e-19 99.0 105 57.1
Gohir.A13G109800 Gossypium hirsutum HOM05D001999 ORTHO05D001994 2.9e-19 98.6 102 54.9
Gohir.D13G112400 Gossypium hirsutum HOM05D001999 ORTHO05D001994 2.9e-19 98.6 107 54.2
Lalb_Chr21g0310571 Lupinus albus HOM05D001999 ORTHO05D001994 2.9e-19 98.6 97 59.8
arahy.Tifrunner.gnm1.ann1.AWF533 Arachis hypogaea HOM05D001999 ORTHO05D001994 3.8e-19 98.2 97 59.8
Lj5g0002371 Lotus japonicus HOM05D001999 ORTHO05D001994 5.0e-19 97.8 100 58.0
TWI36G1062 Tripterygium wilfordii HOM05D001999 ORTHO05D001994 1.5e-18 96.3 100 55.0
Glyma.03G235100 Glycine max HOM05D001999 ORTHO05D001994 1.9e-18 95.9 97 59.8
Ah.04g161170 Amaranthus hybridus HOM05D001999 ORTHO05D001994 2.5e-18 95.5 99 52.5
arahy.Tifrunner.gnm1.ann1.65M59H Arachis hypogaea HOM05D001999 ORTHO05D001994 2.5e-18 95.5 97 57.7
arahy.Tifrunner.gnm1.ann1.9XGC9Z Arachis hypogaea HOM05D001999 ORTHO05D001994 2.5e-18 95.5 97 57.7
Psat0s1500g0040 Pisum sativum HOM05D001999 ORTHO05D001994 3.3e-18 95.1 100 54.0
COL.COLO4_10527 Corchorus olitorius HOM05D001999 ORTHO05D001994 4.3e-18 94.7 99 54.5
TPR.G17700 Trifolium pratense HOM05D001999 ORTHO05D001994 4.3e-18 94.7 100 55.0
TWI56G0125 Tripterygium wilfordii HOM05D001999 ORTHO05D001994 7.3e-18 94.0 100 55.0
Ca_10133_v3 Cicer arietinum L. HOM05D001999 ORTHO05D001994 9.5e-18 93.6 97 58.8
Oeu043739.1 Olea europaea HOM05D001999 ORTHO05D001994 1.6e-17 92.8 86 60.5
TAR633G2461 Trochodendron aralioides HOM05D001999 ORTHO05D001994 1.6e-17 92.8 103 52.4
Medtr1g083390 Medicago truncatula HOM05D001999 ORTHO05D001994 2.8e-17 92.0 100 54.0
Gohir.A11G268300 Gossypium hirsutum HOM05D001999 ORTHO05D001994 3.6e-17 91.7 81 63.0
Gohir.D11G278200 Gossypium hirsutum HOM05D001999 ORTHO05D001994 3.6e-17 91.7 81 63.0
TAR362G0861 Trochodendron aralioides HOM05D001999 ORTHO05D001994 4.7e-17 91.3 93 59.1
Duzib128G0926 Durio zibethinus HOM05D001999 ORTHO05D001994 6.1e-17 90.9 88 59.1
Nn3g21468 Nelumbo nucifera HOM05D001999 ORTHO05D001994 6.1e-17 90.9 99 53.5
Sc16g0008800 Simmondsia chinensis HOM05D001999 ORTHO05D001994 6.1e-17 90.9 101 56.4
DCAR_022143 Daucus carota HOM05D001999 ORTHO05D001994 1.4e-16 89.7 102 50.0
Lalb_Chr15g0077401 Lupinus albus HOM05D001999 ORTHO05D001994 1.8e-16 89.4 95 53.7
ClCG03G017310 Citrullus lanatus HOM05D001999 ORTHO05D001994 2.3e-16 89.0 94 56.4
Sed0027191 Sechium edule HOM05D001999 ORTHO05D001994 2.3e-16 89.0 94 58.5
Ah.06g189850 Amaranthus hybridus HOM05D000145 ORTHO05D001994 4.0e-16 88.2 99 47.5
Sed0011984 Sechium edule HOM05D001999 ORTHO05D001994 4.0e-16 88.2 97 54.6
CsaV3_1G038740 Cucumis sativus L. HOM05D001999 ORTHO05D001994 5.2e-16 87.8 94 55.3
PGR031G0021 Punica granatum HOM05D001999 ORTHO05D001994 5.2e-16 87.8 100 54.0
Ca_05796_v3 Cicer arietinum L. HOM05D001999 ORTHO05D001994 8.9e-16 87.0 97 52.6
Phvul.006G089200 Phaseolus vulgaris HOM05D001999 ORTHO05D001994 8.9e-16 87.0 98 57.1
VMungo0540G0393 Vigna mungo HOM05D001999 ORTHO05D001994 1.5e-15 86.3 98 57.1
DCAR_003361 Daucus carota HOM05D001999 ORTHO05D001994 2.0e-15 85.9 99 51.5
Lj1g0010414 Lotus japonicus HOM05D001999 ORTHO05D001994 2.0e-15 85.9 100 52.0
TAR365G1043 Trochodendron aralioides HOM05D001999 ORTHO05D001994 3.4e-15 85.1 101 50.5
MSTRG.16390 Avicennia marina HOM05D001999 ORTHO05D001994 7.5e-15 84.0 98 48.0
Lalb_Chr18g0045791 Lupinus albus HOM05D001999 ORTHO05D001994 1.3e-14 83.2 94 54.3
Nn4g25807 Nelumbo nucifera HOM05D001999 ORTHO05D001994 1.7e-14 82.8 100 52.0
Eucgr.B01912 Eucalyptus grandis HOM05D001999 ORTHO05D001994 2.9e-14 82.0 99 51.5
HanXRQChr05g0136211 Helianthus annuus HOM05D001999 ORTHO05D001994 4.9e-14 81.3 89 55.1
Lalb_Chr02g0148101 Lupinus albus HOM05D001999 ORTHO05D001994 4.9e-14 81.3 97 52.6
Glyma.20G236700 Glycine max HOM05D001999 ORTHO05D001994 1.8e-13 79.3 74 59.5
HanXRQChr11g0339901 Helianthus annuus HOM05D001999 ORTHO05D001994 3.2e-13 78.6 98 52.0
ECA236G3557 Erigeron canadensis HOM05D001999 ORTHO05D001994 4.1e-13 78.2 102 50.0
Oeu045901.1 Olea europaea HOM05D001999 ORTHO05D001994 7.0e-13 77.4 90 51.1
Aqoxy2G02961 Aquilegia oxysepala HOM05D001999 ORTHO05D001994 9.2e-13 77.0 102 46.1
Hund21714 Selenicereus undatus HOM05D001999 ORTHO05D001994 9.2e-13 77.0 97 48.5
Psat0s1830g0240 Pisum sativum HOM05D001999 ORTHO05D001994 1.2e-12 76.6 97 51.5
TAR636G1732 Trochodendron aralioides HOM05D001999 ORTHO05D001994 3.5e-12 75.1 102 50.0
MSTRG.27977 Avicennia marina HOM05D001999 ORTHO05D001994 5.0e-11 71.2 98 45.9
arahy.Tifrunner.gnm1.ann1.XS7LB4 Arachis hypogaea HOM05D001999 ORTHO05D001994 1.5e-10 69.7 94 48.9
arahy.Tifrunner.gnm1.ann1.5G7CV2 Arachis hypogaea HOM05D001999 ORTHO05D001994 2.5e-10 68.9 94 46.8
TPR.G33183 Trifolium pratense HOM05D001999 ORTHO05D001994 2.5e-10 68.9 90 47.8
Aqoxy5G00748 Aquilegia oxysepala HOM05D001999 ORTHO05D001994 5.6e-10 67.8 93 48.4
Lj5A395G43 Lonicera japonica HOM05D001999 ORTHO05D001994 5.6e-10 67.8 40 85.0
Lsat_1_v5_gn_7_72040 Lactuca sativa HOM05D001999 ORTHO05D001994 1.2e-09 66.6 57 59.6
Oeu010920.1 Olea europaea HOM05D001999 ORTHO05D001994 4.7e-09 64.7 95 45.3
PSO832G2288 Papaver somniferum HOM05D001999 ORTHO05D001994 2.3e-08 62.4 96 40.6
CANSAT54G0146 Cannabis sativa HOM05D001999 ORTHO05D001994 8.9e-08 60.5 98 40.8
DCAR_022142 Daucus carota HOM05D001999 ORTHO05D001994 8.9e-08 60.5 94 42.6
Oeu043342.1 Olea europaea HOM05D001999 ORTHO05D001994 1.2e-07 60.1 90 44.4
SGA_v2.0_scaffold80G25894 Striga asiatica HOM05D001999 ORTHO05D001994 2.0e-07 59.3 102 38.2
CARHR079940 Cardamine hirsuta HOM05D001999 ORTHO05D001994 2.6e-07 58.9 89 47.2
Duzib133G0338 Durio zibethinus HOM05D001999 ORTHO05D001994 3.4e-07 58.5 105 38.1
Duzib138G0033 Durio zibethinus HOM05D001999 ORTHO05D001994 3.4e-07 58.5 100 41.0
PSO170G6103 Papaver somniferum HOM05D001999 ORTHO05D001994 3.4e-07 58.5 99 43.4
Thhalv10020788m.g Eutrema salsugineum HOM05D001999 ORTHO05D001994 4.4e-07 58.2 88 44.3
BcaC05g30158 Brassica carinata HOM05D001999 ORTHO05D001994 5.8e-07 57.8 88 44.3
Sp3g04390 Schrenkiella parvula HOM05D001999 ORTHO05D001994 5.8e-07 57.8 89 46.1
AL3G16160 Arabidopsis lyrata HOM05D001999 ORTHO05D001994 7.5e-07 57.4 88 45.5
AT3G05545 Arabidopsis thaliana HOM05D001999 ORTHO05D001994 7.5e-07 57.4 88 45.5
BcaC09g47839 Brassica carinata HOM05D001999 ORTHO05D001994 7.5e-07 57.4 88 45.5
BolC1t05690H Brassica oleracea HOM05D001999 ORTHO05D001994 7.5e-07 57.4 88 45.5
PSO210G6703 Papaver somniferum HOM05D001999 ORTHO05D001994 9.8e-07 57.0 99 42.4
A03p34190 Brassica napus HOM05D001999 ORTHO05D001994 1.7e-06 56.2 88 44.3
BraA03t12593Z Brassica rapa HOM05D001999 ORTHO05D001994 1.7e-06 56.2 88 44.3
C03p41580 Brassica napus HOM05D001999 ORTHO05D001994 2.9e-06 55.5 88 43.2
THA.LOC104818723 Tarenaya hassleriana HOM05D001999 ORTHO05D001994 2.9e-06 55.5 94 43.6
Carub.0003s0484 Capsella rubella HOM05D001999 ORTHO05D001994 3.7e-06 55.1 88 46.6
Thecc.01G299000 Theobroma cacao HOM05D001999 ORTHO05D001994 8.3e-06 53.9 100 40.0


User provided reference genes

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