Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5C284T7 Lonicera japonica HOM05D005817 ORTHO05D007140 4.9e-117 424.5 214 100.0
Lj9C259G5 Lonicera japonica HOM05D001465 ORTHO05D001434 6.7e-98 360.9 210 87.1
Hma1.2p1_0052F.1_g030020 Hydrangea macrophylla HOM05D005817 ORTHO05D007140 1.7e-93 346.3 208 83.2
Prupe.1G585700 Prunus persica HOM05D005817 ORTHO05D007140 5.0e-93 344.7 209 82.8
CSS0044256 Camellia sinensis var. sinensis HOM05D005817 ORTHO05D007140 1.9e-92 342.8 209 83.3
Rhsim05G0115500 Rhododendron simsii HOM05D005817 ORTHO05D007140 3.2e-92 342.0 209 83.3
MD08G1248300 Malus domestica HOM05D005817 ORTHO05D007140 7.2e-92 340.9 211 82.9
MD15G1443200 Malus domestica HOM05D005817 ORTHO05D007140 1.2e-91 340.1 211 82.5
Actinidia01635 Actinidia chinensis HOM05D005817 ORTHO05D007140 2.7e-91 339.0 209 82.3
Haze_09983 Corylus avellana HOM05D005817 ORTHO05D007140 7.9e-91 337.4 202 82.2
Dinv29679 Davidia involucrata HOM05D005817 ORTHO05D007140 7.9e-91 337.4 209 82.3
Cc02_g23610 Coffea canephora HOM05D005817 ORTHO05D007140 1.0e-90 337.0 209 82.3
CANSAT01G0715 Cannabis sativa HOM05D005817 ORTHO05D007140 1.3e-90 336.7 207 81.2
TPR.G6004 Trifolium pratense HOM05D005817 ORTHO05D007140 2.3e-90 335.9 207 81.6
Ca_13529_v3 Cicer arietinum L. HOM05D005817 ORTHO05D007140 3.0e-90 335.5 207 81.2
Phvul.003G075900 Phaseolus vulgaris HOM05D005817 ORTHO05D007140 3.0e-90 335.5 208 80.8
GSVIVG01023145001 Vitis vinifera HOM05D005817 ORTHO05D007140 3.0e-90 335.5 208 82.7
Oeu028476.1 Olea europaea HOM05D005817 ORTHO05D007140 3.9e-90 335.1 207 80.2
RcHm_v2.0_Chr7g0219661 Rosa chinensis HOM05D005817 ORTHO05D007140 3.9e-90 335.1 209 80.9
Nn5g27184 Nelumbo nucifera HOM05D005817 ORTHO05D007140 5.1e-90 334.7 208 82.7
Glyma.17G001900 Glycine max HOM05D005817 ORTHO05D007140 8.7e-90 334.0 208 81.7
Lsat_1_v5_gn_9_83341 Lactuca sativa HOM05D005817 ORTHO05D007140 8.7e-90 334.0 203 82.3
HanXRQChr15g0469671 Helianthus annuus HOM05D005817 ORTHO05D007140 1.5e-89 333.2 203 82.8
QL02p103359 Quercus lobata HOM05D005817 ORTHO05D007140 1.9e-89 332.8 209 80.4
vmacro19830 Vaccinium macrocarpon HOM05D005817 ORTHO05D007140 1.9e-89 332.8 209 80.4
Oeu028475.1 Olea europaea HOM05D005817 ORTHO05D007140 3.3e-89 332.0 207 79.7
Glyma.07G272500 Glycine max HOM05D005817 ORTHO05D007140 4.3e-89 331.6 202 82.2
Sc03g0006230 Simmondsia chinensis HOM05D005817 ORTHO05D007140 5.7e-89 331.3 203 82.3
VMungo1215G1434 Vigna mungo HOM05D005817 ORTHO05D007140 7.4e-89 330.9 208 80.3
TAR628G1209 Trochodendron aralioides HOM05D005817 ORTHO05D007140 9.7e-89 330.5 204 82.8
ATR1089G128 Amborella trichopoda HOM05D005817 ORTHO05D007140 1.3e-88 330.1 204 80.9
Lalb_Chr07g0176811 Lupinus albus HOM05D005817 ORTHO05D007140 1.3e-88 330.1 202 81.2
Psat4g000960 Pisum sativum HOM05D005817 ORTHO05D007140 1.3e-88 330.1 201 81.1
Lj4g0018327 Lotus japonicus HOM05D005817 ORTHO05D007140 1.6e-88 329.7 201 81.1
FAN18G1253 Fragaria x ananassa HOM05D005817 ORTHO05D007140 2.8e-88 328.9 209 79.4
FvH4_5g27830 Fragaria vesca HOM05D005817 ORTHO05D007140 4.8e-88 328.2 209 79.4
Aqoxy6G00025 Aquilegia oxysepala HOM05D005817 ORTHO05D007140 1.1e-87 327.0 209 78.5
CiPaw.06G176700 Carya illinoinensis HOM05D005817 ORTHO05D007140 1.1e-87 327.0 204 80.9
Eucgr.I02797 Eucalyptus grandis HOM05D005817 ORTHO05D007140 1.1e-87 327.0 209 78.9
PSO017G5300 Papaver somniferum HOM05D005817 ORTHO05D007140 1.4e-87 326.6 209 76.6
Medtr4g134630 Medicago truncatula HOM05D005817 ORTHO05D007140 1.8e-87 326.2 207 78.7
Nitab4.5_0007689g0010 Nicotiana tabacum HOM05D005817 ORTHO05D007140 1.8e-87 326.2 212 78.3
Thecc.06G019900 Theobroma cacao HOM05D005817 ORTHO05D007140 2.4e-87 325.9 202 83.2
arahy.Tifrunner.gnm1.ann1.86KQ48 Arachis hypogaea HOM05D005817 ORTHO05D007140 3.1e-87 325.5 219 76.7
PSO170G5162 Papaver somniferum HOM05D005817 ORTHO05D007140 3.1e-87 325.5 209 76.1
TWI14G0757 Tripterygium wilfordii HOM05D005817 ORTHO05D007140 3.1e-87 325.5 209 79.9
arahy.Tifrunner.gnm1.ann1.NEQE4P Arachis hypogaea HOM05D005817 ORTHO05D007140 4.1e-87 325.1 219 76.7
EL10Ac6g13990 Beta vulgaris HOM05D005817 ORTHO05D007140 4.1e-87 325.1 203 80.3
TAR376G0556 Trochodendron aralioides HOM05D005817 ORTHO05D007140 4.1e-87 325.1 204 80.9
Gohir.D06G122800 Gossypium hirsutum HOM05D005817 ORTHO05D007140 9.0e-87 323.9 208 80.3
SGA_v2.0_scaffold8G04460 Striga asiatica HOM05D005817 ORTHO05D007140 1.2e-86 323.6 208 78.4
CsaV3_5G027420 Cucumis sativus L. HOM05D005817 ORTHO05D007140 1.5e-86 323.2 202 81.7
MBI06_g16620_MAGBIO Magnolia biondii HOM05D005817 ORTHO05D007140 1.5e-86 323.2 209 77.5
Gorai.010G142900 Gossypium raimondii HOM05D005817 ORTHO05D007140 2.6e-86 322.4 208 79.8
Duzib160G0844 Durio zibethinus HOM05D005817 ORTHO05D007140 3.4e-86 322.0 208 79.3
Gohir.A06G115800 Gossypium hirsutum HOM05D005817 ORTHO05D007140 3.4e-86 322.0 208 79.8
Sed0006174 Sechium edule HOM05D005817 ORTHO05D007140 3.4e-86 322.0 209 78.5
COL.COLO4_31118 Corchorus olitorius HOM05D005817 ORTHO05D007140 7.7e-86 320.9 208 80.3
Migut.N00865 Erythranthe guttata HOM05D005817 ORTHO05D007140 7.7e-86 320.9 208 77.9
Manes.07G030600 Manihot esculenta HOM05D005817 ORTHO05D007140 1.3e-85 320.1 214 78.0
Ah.03g136770 Amaranthus hybridus HOM05D005817 ORTHO05D007140 2.2e-85 319.3 215 74.9
Solyc01g103020.4 Solanum lycopersicum HOM05D005817 ORTHO05D007140 3.8e-85 318.5 207 76.8
Sopen01g045430 Solanum pennellii HOM05D005817 ORTHO05D007140 3.8e-85 318.5 207 76.8
AUR62043876 Chenopodium quinoa HOM05D005817 ORTHO05D007140 5.0e-85 318.2 205 79.5
AUR62032450 Chenopodium quinoa HOM05D005817 ORTHO05D007140 6.5e-85 317.8 206 79.1
Ciclev10002025m.g Citrus clementina HOM05D005817 ORTHO05D007140 1.4e-84 316.6 209 78.5
CAN.G855.54 Capsicum annuum HOM05D005817 ORTHO05D007140 3.2e-84 315.5 212 76.9
PGR142G3472 Punica granatum HOM05D005817 ORTHO05D007140 3.2e-84 315.5 207 75.4
PGSC0003DMG400020713 Solanum tuberosum HOM05D005817 ORTHO05D007140 3.2e-84 315.5 207 76.3
Hund15375 Selenicereus undatus HOM05D005817 ORTHO05D007140 1.2e-83 313.5 211 77.3
CDE07G1199 Ceratophyllum demersum HOM05D005817 ORTHO05D007140 1.6e-83 313.2 198 81.3
Potri.004G229200 Populus trichocarpa HOM05D005817 ORTHO05D007140 2.7e-83 312.4 202 77.7
Peaxi162Scf00011g01920 Petunia axillaris HOM05D005817 ORTHO05D007140 3.6e-83 312.0 268 61.9
Sabra01G0174300 Salix brachista HOM05D005817 ORTHO05D007140 4.6e-83 311.6 202 78.2
CDE08G0344 Ceratophyllum demersum HOM05D005817 ORTHO05D007140 7.9e-83 310.8 209 76.6
Manes.10G106400 Manihot esculenta HOM05D005817 ORTHO05D007140 1.0e-82 310.5 209 77.5
Atru.chr6.226 Acer truncatum HOM05D005817 ORTHO05D007140 3.9e-82 308.5 209 77.5
Os08g0109900 Oryza sativa ssp. japonica HOM05D005817 ORTHO05D007140 8.8e-82 307.4 208 75.5
THA.LOC104824089 Tarenaya hassleriana HOM05D005817 ORTHO05D007140 2.5e-81 305.8 209 74.2
SHI04993 Sapria himalayana HOM05D005817 ORTHO05D007140 4.3e-81 305.1 199 77.4
Sp2g13800 Schrenkiella parvula HOM05D005817 ORTHO05D007140 1.7e-80 303.1 211 73.9
Carub.0005s0157 Capsella rubella HOM05D005817 ORTHO05D007140 1.1e-79 300.4 206 73.8
Hma1.2p1_0052F.1_g030010 Hydrangea macrophylla HOM05D005817 ORTHO05D007140 1.4e-79 300.1 185 82.7
AT2G02570 Arabidopsis thaliana HOM05D005817 ORTHO05D007140 3.1e-79 298.9 211 72.5
FAN04G1604 Fragaria x ananassa HOM05D005817 ORTHO05D007140 5.3e-79 298.1 277 59.9
Thhalv10004677m.g Eutrema salsugineum HOM05D005817 ORTHO05D007140 6.9e-79 297.7 206 72.8
AL5G11840 Arabidopsis lyrata HOM05D005817 ORTHO05D007140 9.1e-79 297.4 206 72.3
ECA236G3641 Erigeron canadensis HOM05D000284 ORTHO05D000805 1.2e-78 297.0 186 82.8
Aa31LG2G7570 Aethionema arabicum HOM05D005817 ORTHO05D007140 7.7e-78 294.3 198 74.7
C02p50820 Brassica napus HOM05D005817 ORTHO05D007140 1.4e-76 290.0 211 70.6
unitig_22.g6849 Utricularia gibba HOM05D005817 ORTHO05D007140 1.4e-76 290.0 201 75.1
BcaC06g31224 Brassica carinata HOM05D005817 ORTHO05D007140 1.9e-76 289.7 211 70.1
A06p43560 Brassica napus HOM05D005817 ORTHO05D007140 1.9e-76 289.7 211 70.6
BraA06t27241Z Brassica rapa HOM05D005817 ORTHO05D007140 1.9e-76 289.7 211 70.6
C07p33290 Brassica napus HOM05D005817 ORTHO05D007140 2.5e-76 289.3 211 70.1
BolC7t43840H Brassica oleracea HOM05D005817 ORTHO05D007140 2.5e-76 289.3 211 70.1
Mapoly0107s0026 Marchantia polymorpha HOM05D005817 ORTHO05D007140 1.2e-75 287.0 215 69.3
BolC2t11164H Brassica oleracea HOM05D005817 ORTHO05D007140 5.1e-74 281.6 215 68.8
ClCG11G000310 Citrullus lanatus HOM05D005817 ORTHO05D007140 7.4e-73 277.7 181 80.7
A02p33050 Brassica napus HOM05D005817 ORTHO05D007140 4.8e-72 275.0 211 68.2
BcaC03g17157 Brassica carinata HOM05D005817 ORTHO05D007140 6.3e-72 274.6 211 66.8
SMO117G0163 Selaginella moellendorffii HOM05D005817 ORTHO05D007140 1.4e-71 273.5 202 68.3
FAN08G2336 Fragaria x ananassa HOM05D005817 ORTHO05D007140 1.8e-71 273.1 277 57.4
AagrBONN_evm.TU.Sc2ySwM_117.207 Anthoceros agrestis HOM05D005817 ORTHO05D007140 2.6e-70 269.2 202 69.3
Pp3c10_3580 Physcomitrium patens HOM05D005817 ORTHO05D007140 8.5e-69 264.2 228 63.2
Pp3c10_3582 Physcomitrium patens HOM05D005817 ORTHO05D007140 8.5e-69 264.2 228 63.2
Lalb_Chr12g0195861 Lupinus albus HOM05D005817 ORTHO05D007140 2.5e-68 262.7 167 80.8
Pp3c1_22040 Physcomitrium patens HOM05D005817 ORTHO05D007140 1.4e-66 256.9 218 65.6
Actinidia26194 Actinidia chinensis HOM05D005817 ORTHO05D007140 7.5e-65 251.1 161 81.4
RcHm_v2.0_Chr5g0068831 Rosa chinensis HOM05D005817 ORTHO05D007140 3.5e-62 242.3 157 80.9
CBR_g40810 Chara braunii HOM05D005817 ORTHO05D007140 5.5e-60 235.0 218 60.1
BraA02t08326Z Brassica rapa HOM05D005817 ORTHO05D007140 1.6e-59 233.4 176 68.2
Nitab4.5_0003247g0070 Nicotiana tabacum HOM05D005817 ORTHO05D007140 2.3e-58 229.6 154 76.6
Cpa.g.sc173.14 Carica papaya HOM05D005817 ORTHO05D007140 5.2e-58 228.4 157 74.5
CDE04G1950 Ceratophyllum demersum HOM05D005817 ORTHO05D007140 5.7e-57 224.9 161 72.0
Duzib235G1547 Durio zibethinus HOM05D005817 ORTHO05D007140 1.3e-56 223.8 156 75.6
Pp3c14_9240 Physcomitrium patens HOM05D005817 ORTHO05D007140 2.8e-56 222.6 195 62.1
Aqoxy385s001 Aquilegia oxysepala HOM05D005817 ORTHO05D007140 3.7e-56 222.2 209 60.8
HPP92_002041 Vanilla planifolia HOM05D005817 ORTHO05D007140 8.3e-56 221.1 158 71.5
CDE02G1227 Ceratophyllum demersum HOM05D005817 ORTHO05D007140 4.1e-55 218.8 202 59.4
Zm00001eb174130 Zea mays HOM05D005817 ORTHO05D007140 5.7e-49 198.4 136 77.9
MSTRG.27880 Avicennia marina HOM05D005817 ORTHO05D007140 1.4e-47 193.7 135 73.3
MSTRG.601 Avicennia marina HOM05D005817 ORTHO05D007140 1.8e-34 150.2 111 67.6
Dinv29634 Davidia involucrata HOM05D005817 ORTHO05D007140 5.8e-25 118.6 59 83.1
Cre02.g106550 Chlamydomonas reinhardtii HOM05D005817 ORTHO05D007140 3.2e-23 112.8 190 39.5
MCO12G229 Micromonas commoda HOM05D005817 ORTHO05D007140 2.0e-17 93.6 206 33.5
VMungo0766G0001 Vigna mungo HOM05D005817 ORTHO05D007140 1.7e-16 90.5 54 70.4
PRCOL_00002712 Prasinoderma coloniale HOM05D005817 ORTHO05D007140 7.1e-15 85.1 195 34.4
SEGI_07435 Sequoiadendron giganteum HOM05D005817 ORTHO05D007140 7.1e-15 85.1 81 56.8
FvH4_3g40414 Fragaria vesca HOM05D005817 ORTHO05D007140 2.5e-12 76.6 75 60.0
Thhalv10005196m.g Eutrema salsugineum HOM05D005817 ORTHO05D007140 3.6e-11 72.8 52 73.1
COL.COLO4_38165 Corchorus olitorius HOM05D011921 ORTHO05D160408 1.6e-06 57.4 176 32.4


User provided reference genes

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