Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5C243T9 Lonicera japonica HOM05D003620 ORTHO05D004261 1.7e-120 436.0 218 100.0
FAN13G1243 Fragaria x ananassa HOM05D003620 ORTHO05D004261 3.2e-95 352.1 215 78.6
Dinv24230 Davidia involucrata HOM05D003620 ORTHO05D004261 1.7e-93 346.3 247 70.0
CSS0011415 Camellia sinensis var. sinensis HOM05D003620 ORTHO05D004261 3.3e-92 342.0 244 70.5
Prupe.1G560600 Prunus persica HOM05D003620 ORTHO05D004261 3.3e-92 342.0 244 71.3
TAR625G1066 Trochodendron aralioides HOM05D003620 ORTHO05D004261 7.3e-92 340.9 247 70.0
Cfa005564 Carpinus fangiana HOM05D003620 ORTHO05D004261 4.7e-91 338.2 244 69.7
Thecc.02G144000 Theobroma cacao HOM05D003620 ORTHO05D004261 4.7e-91 338.2 247 68.8
Nn1g06259 Nelumbo nucifera HOM05D003620 ORTHO05D004261 8.1e-91 337.4 244 70.9
FvH4_5g30530 Fragaria vesca HOM05D003620 ORTHO05D004261 1.1e-90 337.0 244 68.9
FAN18G1779 Fragaria x ananassa HOM05D003620 ORTHO05D004261 1.1e-90 337.0 244 68.9
FAN04G1518 Fragaria x ananassa HOM05D003620 ORTHO05D004261 1.4e-90 336.7 244 68.9
RcHm_v2.0_Chr7g0225351 Rosa chinensis HOM05D003620 ORTHO05D004261 1.4e-90 336.7 244 69.3
FAN08G3618 Fragaria x ananassa HOM05D003620 ORTHO05D004261 3.1e-90 335.5 244 68.9
MD08G1222700 Malus domestica HOM05D003620 ORTHO05D004261 2.6e-89 332.4 244 68.9
Manes.07G024800 Manihot esculenta HOM05D003620 ORTHO05D004261 5.8e-89 331.3 240 69.2
Potri.001G172400 Populus trichocarpa HOM05D003620 ORTHO05D004261 9.8e-89 330.5 244 68.4
QL02p098754 Quercus lobata HOM05D003620 ORTHO05D004261 9.8e-89 330.5 245 69.4
DCAR_001444 Daucus carota HOM05D003620 ORTHO05D004261 2.9e-88 328.9 233 71.2
Lsat_1_v5_gn_7_80501 Lactuca sativa HOM05D003620 ORTHO05D004261 2.9e-88 328.9 247 67.2
Peaxi162Scf00001g00523 Petunia axillaris HOM05D003620 ORTHO05D004261 2.9e-88 328.9 244 67.2
Gohir.A12G013800 Gossypium hirsutum HOM05D003620 ORTHO05D004261 4.9e-88 328.2 244 68.0
Gohir.D12G014500 Gossypium hirsutum HOM05D003620 ORTHO05D004261 4.9e-88 328.2 244 68.0
ECA236G2397 Erigeron canadensis HOM05D003620 ORTHO05D004261 6.4e-88 327.8 247 68.0
Sabra01G0139300 Salix brachista HOM05D003620 ORTHO05D004261 2.4e-87 325.9 244 69.3
Gorai.008G014600 Gossypium raimondii HOM05D003620 ORTHO05D004261 3.2e-87 325.5 244 67.2
TWI14G0354 Tripterygium wilfordii HOM05D003620 ORTHO05D004261 3.2e-87 325.5 247 66.0
ECA240G1941 Erigeron canadensis HOM05D003620 ORTHO05D004261 4.1e-87 325.1 241 68.0
vmacro01806 Vaccinium macrocarpon HOM05D003620 ORTHO05D004261 4.1e-87 325.1 241 68.5
Cc02_g21940 Coffea canephora HOM05D003620 ORTHO05D004261 1.2e-86 323.6 244 68.0
Oeu047368.1 Olea europaea HOM05D003620 ORTHO05D004261 2.7e-86 322.4 228 70.6
Potri.003G061700 Populus trichocarpa HOM05D003620 ORTHO05D004261 2.7e-86 322.4 237 69.6
HanXRQChr11g0337651 Helianthus annuus HOM05D003620 ORTHO05D004261 3.5e-86 322.0 239 69.9
Actinidia38967 Actinidia chinensis HOM05D003620 ORTHO05D004261 6.0e-86 321.2 244 66.4
GSVIVG01029732001 Vitis vinifera HOM05D003620 ORTHO05D004261 1.0e-85 320.5 225 73.8
Duzib132G0147 Durio zibethinus HOM05D003620 ORTHO05D004261 1.7e-85 319.7 230 68.3
CAN.G523.97 Capsicum annuum HOM05D003620 ORTHO05D004261 2.3e-85 319.3 241 66.0
Solyc01g104880.3 Solanum lycopersicum HOM05D003620 ORTHO05D004261 3.9e-85 318.5 244 66.4
Sopen01g047400 Solanum pennellii HOM05D003620 ORTHO05D004261 5.1e-85 318.2 244 66.0
Nitab4.5_0007987g0020 Nicotiana tabacum HOM05D003620 ORTHO05D004261 6.6e-85 317.8 230 69.1
COL.COLO4_20874 Corchorus olitorius HOM05D003620 ORTHO05D004261 8.6e-85 317.4 230 68.3
Aqoxy6G00354 Aquilegia oxysepala HOM05D003620 ORTHO05D004261 1.5e-84 316.6 246 65.0
VMungo0540G0770 Vigna mungo HOM05D003620 ORTHO05D004261 1.5e-84 316.6 230 68.3
ClCG09G013430 Citrullus lanatus HOM05D003620 ORTHO05D004261 2.5e-84 315.8 244 64.3
Actinidia00242 Actinidia chinensis HOM05D003620 ORTHO05D004261 4.3e-84 315.1 225 69.8
Lsat_1_v5_gn_9_117920 Lactuca sativa HOM05D003620 ORTHO05D004261 4.3e-84 315.1 236 68.2
Atru.chr6.881 Acer truncatum HOM05D003620 ORTHO05D004261 5.6e-84 314.7 230 69.6
Ca_00113_v3 Cicer arietinum L. HOM05D003620 ORTHO05D004261 7.3e-84 314.3 230 68.3
THA.LOC104811774 Tarenaya hassleriana HOM05D003620 ORTHO05D004261 7.3e-84 314.3 245 65.3
MELO3C018674.2 Cucumis melo HOM05D003620 ORTHO05D004261 9.5e-84 313.9 244 63.9
Sabra03G0035800 Salix brachista HOM05D003620 ORTHO05D004261 9.5e-84 313.9 238 67.6
CSS0027167 Camellia sinensis var. sinensis HOM05D003620 ORTHO05D004261 1.2e-83 313.5 230 70.0
Eucgr.G00656 Eucalyptus grandis HOM05D003620 ORTHO05D004261 1.2e-83 313.5 244 64.8
CsaV3_7G006180 Cucumis sativus L. HOM05D003620 ORTHO05D004261 1.6e-83 313.2 244 63.9
Sed0005951 Sechium edule HOM05D003620 ORTHO05D004261 2.1e-83 312.8 244 64.8
Glyma.08G181200 Glycine max HOM05D003620 ORTHO05D004261 1.4e-82 310.1 230 67.8
SalBow5G2235 Salvia bowleyana HOM05D003620 ORTHO05D004261 1.4e-82 310.1 230 68.7
SalBow5G2754 Salvia bowleyana HOM05D003620 ORTHO05D004261 1.4e-82 310.1 230 68.7
BcaNung03773 Brassica carinata HOM05D003620 ORTHO05D004261 2.3e-82 309.3 247 66.0
TPR.G19731 Trifolium pratense HOM05D003620 ORTHO05D004261 4.0e-82 308.5 230 67.0
MBI06_g29671_MAGBIO Magnolia biondii HOM05D003620 ORTHO05D004261 5.2e-82 308.1 240 65.8
Aa31LG3G330 Aethionema arabicum HOM05D003620 ORTHO05D004261 6.8e-82 307.8 245 64.9
A01p17230 Brassica napus HOM05D003620 ORTHO05D004261 8.9e-82 307.4 247 65.6
BraA01t01679Z Brassica rapa HOM05D003620 ORTHO05D004261 8.9e-82 307.4 247 65.6
HanXRQChr03g0065791 Helianthus annuus HOM05D003620 ORTHO05D004261 8.9e-82 307.4 241 64.7
BcaC09g50725 Brassica carinata HOM05D003620 ORTHO05D004261 1.2e-81 307.0 247 65.2
C01p21590 Brassica napus HOM05D003620 ORTHO05D004261 1.2e-81 307.0 247 65.2
BolC1t02078H Brassica oleracea HOM05D003620 ORTHO05D004261 1.2e-81 307.0 247 65.2
Psat1g218440 Pisum sativum HOM05D003620 ORTHO05D004261 1.2e-81 307.0 229 66.8
Lj6g0005534 Lotus japonicus HOM05D003620 ORTHO05D004261 1.5e-81 306.6 230 67.0
Manes.10G117200 Manihot esculenta HOM05D003620 ORTHO05D004261 2.0e-81 306.2 229 69.4
CANSAT11G1106 Cannabis sativa HOM05D003620 ORTHO05D004261 3.4e-81 305.4 240 65.0
Lalb_Chr18g0060681 Lupinus albus HOM05D003620 ORTHO05D004261 4.4e-81 305.1 230 67.4
Thhalv10024661m.g Eutrema salsugineum HOM05D003620 ORTHO05D004261 5.8e-81 304.7 244 63.9
MSTRG.16561 Avicennia marina HOM05D003620 ORTHO05D004261 7.6e-81 304.3 230 66.5
CANSAT11G0919 Cannabis sativa HOM05D003620 ORTHO05D004261 7.6e-81 304.3 240 65.0
THA.LOC104817775 Tarenaya hassleriana HOM05D003620 ORTHO05D004261 7.6e-81 304.3 247 61.9
Carub.0007s1498 Capsella rubella HOM05D003620 ORTHO05D004261 9.9e-81 303.9 244 63.9
Sc09g0004430 Simmondsia chinensis HOM05D003620 ORTHO05D004261 1.7e-80 303.1 231 67.1
Migut.B00643 Erythranthe guttata HOM05D003620 ORTHO05D004261 3.8e-80 302.0 231 66.7
Phvul.006G208800 Phaseolus vulgaris HOM05D003620 ORTHO05D004261 3.8e-80 302.0 230 65.7
PGR042G1212 Punica granatum HOM05D003620 ORTHO05D004261 3.8e-80 302.0 231 67.5
Medtr2g008190 Medicago truncatula HOM05D003620 ORTHO05D004261 4.9e-80 301.6 230 66.1
Sp6g18920 Schrenkiella parvula HOM05D003620 ORTHO05D004261 8.4e-80 300.8 232 65.9
AT4G25970 Arabidopsis thaliana HOM05D003620 ORTHO05D004261 1.4e-79 300.1 244 63.1
BcaC04g19991 Brassica carinata HOM05D003620 ORTHO05D004261 3.2e-79 298.9 229 66.4
C09p49020 Brassica napus HOM05D003620 ORTHO05D004261 3.2e-79 298.9 229 66.4
BolC9t57753H Brassica oleracea HOM05D003620 ORTHO05D004261 3.2e-79 298.9 229 66.4
ATR1136G049 Amborella trichopoda HOM05D003620 ORTHO05D004261 7.1e-79 297.7 246 61.4
Thhalv10012950m.g Eutrema salsugineum HOM05D003620 ORTHO05D004261 7.1e-79 297.7 236 64.8
CARHR233480 Cardamine hirsuta HOM05D003620 ORTHO05D004261 9.2e-79 297.4 244 63.9
Os01g0959800 Oryza sativa ssp. japonica HOM05D003620 ORTHO05D004261 9.2e-79 297.4 244 61.1
A10p14580 Brassica napus HOM05D003620 ORTHO05D004261 1.6e-78 296.6 229 65.5
BraA10t43545Z Brassica rapa HOM05D003620 ORTHO05D004261 1.6e-78 296.6 229 65.5
AL7G27030 Arabidopsis lyrata HOM05D003620 ORTHO05D004261 3.5e-78 295.4 244 62.7
BcaB08g36077 Brassica carinata HOM05D003620 ORTHO05D004261 4.6e-78 295.0 229 65.9
AT5G57190 Arabidopsis thaliana HOM05D003620 ORTHO05D004261 1.3e-77 293.5 236 64.4
AL8G33150 Arabidopsis lyrata HOM05D003620 ORTHO05D004261 6.6e-77 291.2 237 64.1
CARHR270980 Cardamine hirsuta HOM05D003620 ORTHO05D004261 8.6e-77 290.8 229 64.2
AL161U10010 Arabidopsis lyrata HOM05D003620 ORTHO05D004261 1.1e-76 290.4 230 65.2
AUR62004784 Chenopodium quinoa HOM05D003620 ORTHO05D004261 1.1e-76 290.4 229 65.9
CDE08G1148 Ceratophyllum demersum HOM05D003620 ORTHO05D004261 1.5e-76 290.0 231 63.6
Carub.0008s1770 Capsella rubella HOM05D003620 ORTHO05D004261 2.5e-76 289.3 232 64.7
PSO541G1613 Papaver somniferum HOM05D003620 ORTHO05D004261 5.6e-76 288.1 230 64.8
PSO675G2802 Papaver somniferum HOM05D003620 ORTHO05D004261 2.1e-75 286.2 230 64.3
Rhsim11G0134200 Rhododendron simsii HOM05D003620 ORTHO05D004261 3.1e-74 282.3 217 65.4
EL10Ac4g08941 Beta vulgaris HOM05D003620 ORTHO05D004261 4.4e-73 278.5 227 64.3
Oeu037206.2 Olea europaea HOM05D003620 ORTHO05D004261 7.1e-71 271.2 200 69.5
CiPaw.05G039200 Carya illinoinensis HOM05D003620 ORTHO05D004261 1.6e-70 270.0 194 71.1
AagrBONN_evm.TU.Sc2ySwM_228.3970 Anthoceros agrestis HOM05D003620 ORTHO05D004261 2.5e-68 262.7 247 55.5
Mapoly0064s0044 Marchantia polymorpha HOM05D003620 ORTHO05D004261 1.3e-67 260.4 245 55.1
Aa31LG3G13090 Aethionema arabicum HOM05D003620 ORTHO05D004261 6.9e-66 254.6 229 60.3
SMO244G0007 Selaginella moellendorffii HOM05D003620 ORTHO05D004261 2.0e-65 253.1 225 58.2
Nitab4.5_0008610g0050 Nicotiana tabacum HOM05D003620 ORTHO05D004261 2.4e-63 246.1 231 57.1
Lj6g0009012 Lotus japonicus HOM05D003620 ORTHO05D004261 3.2e-63 245.7 202 62.9
Pp3c15_7420 Physcomitrium patens HOM05D003620 ORTHO05D004261 3.2e-63 245.7 222 58.1
HPP92_019398 Vanilla planifolia HOM05D003620 ORTHO05D004261 3.5e-62 242.3 197 62.9
Peaxi162Scf00152g01227 Petunia axillaris HOM05D003620 ORTHO05D004261 3.0e-61 239.2 229 57.2
AUR62003395 Chenopodium quinoa HOM05D003620 ORTHO05D004261 3.1e-58 229.2 229 57.2
Cpa.g.sc845.5 Carica papaya HOM05D003620 ORTHO05D004261 6.9e-58 228.0 170 67.6
CBR_g4358 Chara braunii HOM05D003620 ORTHO05D004261 8.4e-56 221.1 207 55.6
C09p20220 Brassica napus HOM05D003620 ORTHO05D004261 6.7e-53 211.5 154 66.2
BolC9t54929H Brassica oleracea HOM05D003620 ORTHO05D004261 6.7e-53 211.5 154 66.2
BcaC04g22352 Brassica carinata HOM05D003620 ORTHO05D004261 7.1e-47 191.4 124 70.2
Ciclev10000710m.g Citrus clementina HOM05D003620 ORTHO05D004261 1.2e-46 190.7 121 73.6
Hund22190 Selenicereus undatus HOM05D003620 ORTHO05D004261 4.3e-44 182.2 184 56.0
Zm00001eb362570 Zea mays HOM05D003620 ORTHO05D004261 7.6e-41 171.4 121 66.9
Haze_10770 Corylus avellana HOM05D003620 ORTHO05D004261 2.5e-39 166.4 95 82.1
arahy.Tifrunner.gnm1.ann1.F2S38R Arachis hypogaea HOM05D003620 ORTHO05D004261 5.1e-37 158.7 89 82.0
MELO3C003259.2 Cucumis melo HOM05D003620 ORTHO05D004261 3.3e-36 156.0 159 52.2
CsaV3_3G020620 Cucumis sativus L. HOM05D003620 ORTHO05D004261 7.7e-33 144.8 156 48.7
SEGI_27738 Sequoiadendron giganteum HOM05D003620 ORTHO05D004261 6.5e-32 141.7 100 67.0
CsaV3_6G003040 Cucumis sativus L. HOM05D003620 ORTHO05D004261 8.5e-32 141.4 114 63.2
BolC7t41195H Brassica oleracea HOM05D003620 ORTHO05D004261 9.7e-28 127.9 95 65.3
C07p07770 Brassica napus HOM05D003620 ORTHO05D004261 3.7e-27 125.9 98 66.3
arahy.Tifrunner.gnm1.ann1.3Q8P58 Arachis hypogaea HOM05D003620 ORTHO05D004261 1.2e-25 120.9 132 51.5
PRCOL_00006167 Prasinoderma coloniale HOM05D003620 ORTHO05D004261 3.8e-24 115.9 228 32.9
Cre02.g119600 Chlamydomonas reinhardtii HOM05D003620 ORTHO05D004261 7.2e-23 111.7 218 32.6
GSVIVG01038340001 Vitis vinifera HOM05D003620 ORTHO05D004261 3.3e-20 102.8 62 74.2
MELO3C026793.2 Cucumis melo HOM05D003620 ORTHO05D004261 2.2e-19 100.1 56 76.8
Ciclev10002987m.g Citrus clementina HOM05D003620 ORTHO05D004261 1.4e-18 97.4 78 60.3
C07p07780 Brassica napus HOM05D003620 ORTHO05D004261 3.8e-16 89.4 57 66.7
BolC7t41196H Brassica oleracea HOM05D003620 ORTHO05D004261 3.8e-16 89.4 57 66.7
Ca_29382_v3 Cicer arietinum L. HOM05D003620 ORTHO05D007438 1.9e-15 87.0 151 33.8
C07p07760 Brassica napus HOM05D003620 ORTHO05D004261 5.5e-15 85.5 142 37.3
SEGI_34524 Sequoiadendron giganteum HOM05D003620 ORTHO05D004261 7.2e-15 85.1 59 71.2
Glyma.15G051100 Glycine max HOM05D003620 ORTHO05D004261 1.6e-14 84.0 59 67.8
Lsat_1_v5_gn_4_179761 Lactuca sativa HOM05D003620 ORTHO05D004261 2.1e-14 83.6 105 47.6
Pp3s32_287 Physcomitrium patens HOM05D003620 ORTHO05D007438 2.1e-14 83.6 146 33.6
Hund22189 Selenicereus undatus HOM05D003620 ORTHO05D004261 1.1e-10 71.2 49 67.3
arahy.Tifrunner.gnm1.ann1.UIRN9X Arachis hypogaea HOM05D003620 ORTHO05D004261 1.3e-08 64.3 67 49.3
GSVIVG01010110001 Vitis vinifera HOM05D003620 ORTHO05D004261 1.1e-07 61.2 36 80.6


User provided reference genes

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