Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5A87T69 Lonicera japonica HOM05D004329 ORTHO05D005516 0.0e+00 1165.2 594 100.0
Dinv23217 Davidia involucrata HOM05D004329 ORTHO05D005516 8.4e-284 979.9 589 84.6
Actinidia18306 Actinidia chinensis HOM05D004329 ORTHO05D005516 3.2e-283 978.0 589 84.4
CSS0022050 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 3.2e-283 978.0 590 85.3
vmacro19178 Vaccinium macrocarpon HOM05D004329 ORTHO05D005516 9.3e-283 976.5 589 84.0
Hma1.2p1_0493F.1_g164990 Hydrangea macrophylla HOM05D004329 ORTHO05D005516 6.0e-282 973.8 589 83.9
Rhsim08G0196600 Rhododendron simsii HOM05D004329 ORTHO05D005516 3.0e-281 971.5 590 84.1
Actinidia36840 Actinidia chinensis HOM05D004329 ORTHO05D005516 2.6e-277 958.4 589 82.2
vmacro06162 Vaccinium macrocarpon HOM05D004329 ORTHO05D005516 3.8e-276 954.5 589 82.5
Dinv13728 Davidia involucrata HOM05D004329 ORTHO05D005516 2.7e-274 948.3 561 86.5
Thecc.03G139600 Theobroma cacao HOM05D004329 ORTHO05D005516 4.6e-274 947.6 578 82.4
QL10p000650 Quercus lobata HOM05D004329 ORTHO05D005516 2.3e-273 945.3 577 82.1
Duzib205G0720 Durio zibethinus HOM05D004329 ORTHO05D005516 3.0e-273 944.9 578 81.7
Nitab4.5_0007718g0050 Nicotiana tabacum HOM05D004329 ORTHO05D005516 2.5e-272 941.8 589 81.3
Sopen02g013850 Solanum pennellii HOM05D004329 ORTHO05D005516 5.7e-272 940.6 589 81.2
Solyc02g062810.4 Solanum lycopersicum HOM05D004329 ORTHO05D005516 1.6e-271 939.1 589 81.0
Sopen03g024820 Solanum pennellii HOM05D004329 ORTHO05D005516 8.2e-271 936.8 589 81.5
MSTRG.22850 Avicennia marina HOM05D004329 ORTHO05D005516 1.1e-270 936.4 590 81.0
Atru.chr6.1908 Acer truncatum HOM05D004329 ORTHO05D005516 3.1e-270 934.9 587 81.3
Cfa018712 Carpinus fangiana HOM05D004329 ORTHO05D005516 3.1e-270 934.9 578 82.4
CANSAT80G0883 Cannabis sativa HOM05D004329 ORTHO05D005516 5.3e-270 934.1 589 79.5
CANSAT80G0741 Cannabis sativa HOM05D004329 ORTHO05D005516 1.5e-269 932.6 590 79.5
Solyc03g093970.3 Solanum lycopersicum HOM05D004329 ORTHO05D005516 2.0e-269 932.2 589 81.2
Gohir.D07G051400 Gossypium hirsutum HOM05D004329 ORTHO05D005516 3.4e-269 931.4 578 81.0
CAN.G1210.1 Capsicum annuum HOM05D004329 ORTHO05D005516 4.5e-269 931.0 589 81.2
TAR374G0799 Trochodendron aralioides HOM05D004329 ORTHO05D005516 2.9e-268 928.3 589 79.6
TWI39G0623 Tripterygium wilfordii HOM05D004329 ORTHO05D005516 8.5e-268 926.8 578 81.0
Ciclev10031005m.g Citrus clementina HOM05D004329 ORTHO05D005516 3.2e-267 924.9 589 79.6
Prupe.5G142700 Prunus persica HOM05D004329 ORTHO05D005516 5.5e-267 924.1 595 78.5
Gohir.A07G047200 Gossypium hirsutum HOM05D004329 ORTHO05D005516 9.4e-267 923.3 584 80.1
Haze_07104 Corylus avellana HOM05D004329 ORTHO05D005516 1.6e-266 922.5 602 79.1
Lsat_1_v5_gn_4_84600 Lactuca sativa HOM05D004329 ORTHO05D005516 3.6e-266 921.4 586 80.4
Gorai.001G054500 Gossypium raimondii HOM05D004329 ORTHO05D005516 6.1e-266 920.6 592 78.7
Peaxi162Scf00935g00018 Petunia axillaris HOM05D004329 ORTHO05D005516 2.3e-265 918.7 589 80.0
Migut.I00617 Erythranthe guttata HOM05D004329 ORTHO05D005516 5.1e-265 917.5 590 79.2
DCAR_016350 Daucus carota HOM05D004329 ORTHO05D005516 8.8e-265 916.8 595 80.8
CiPaw.09G139600 Carya illinoinensis HOM05D004329 ORTHO05D005516 1.5e-264 916.0 557 82.0
SGA_v2.0_scaffold74G24730 Striga asiatica HOM05D004329 ORTHO05D005516 1.5e-264 916.0 609 77.7
Oeu012844.2 Olea europaea HOM05D004329 ORTHO05D005516 4.3e-264 914.4 645 74.1
Actinidia08906 Actinidia chinensis HOM05D000877 ORTHO05D001509 5.7e-264 914.1 541 84.7
ECA232G2772 Erigeron canadensis HOM05D004329 ORTHO05D005516 1.7e-263 912.5 576 79.7
PGR083G0006 Punica granatum HOM05D004329 ORTHO05D005516 4.8e-263 911.0 578 79.2
Nn4g22142 Nelumbo nucifera HOM05D004329 ORTHO05D005516 4.1e-262 907.9 560 80.4
MD14G1148000 Malus domestica HOM05D004329 ORTHO05D005516 4.5e-261 904.4 594 78.1
Sc22g0003470 Simmondsia chinensis HOM05D004329 ORTHO05D005516 4.5e-261 904.4 586 77.5
Potri.015G105600 Populus trichocarpa HOM05D004329 ORTHO05D005516 8.5e-260 900.2 560 79.8
GSVIVG01008641001 Vitis vinifera HOM05D004329 ORTHO05D005516 1.1e-259 899.8 589 78.1
EL10Ac7g17942 Beta vulgaris HOM05D004329 ORTHO05D005516 5.5e-259 897.5 565 79.1
ClCG03G012650 Citrullus lanatus HOM05D004329 ORTHO05D005516 5.5e-259 897.5 589 78.3
HanXRQChr09g0273891 Helianthus annuus HOM05D004329 ORTHO05D005516 5.5e-259 897.5 580 78.6
Medtr8g100110 Medicago truncatula HOM05D004329 ORTHO05D005516 7.2e-259 897.1 598 75.3
Potri.012G106200 Populus trichocarpa HOM05D004329 ORTHO05D005516 1.2e-258 896.3 578 77.7
MD06G1131700 Malus domestica HOM05D004329 ORTHO05D005516 1.6e-258 896.0 596 77.0
COL.COLO4_37247 Corchorus olitorius HOM05D004329 ORTHO05D005516 2.1e-258 895.6 597 76.5
Sed0013101 Sechium edule HOM05D004329 ORTHO05D005516 3.6e-258 894.8 589 77.9
TPR.G12807 Trifolium pratense HOM05D004329 ORTHO05D005516 1.4e-257 892.9 598 75.4
Lj4g0026438 Lotus japonicus HOM05D004329 ORTHO05D005516 1.8e-257 892.5 586 76.1
RcHm_v2.0_Chr7g0188791 Rosa chinensis HOM05D004329 ORTHO05D005516 1.8e-257 892.5 579 78.8
Glyma.05G200600 Glycine max HOM05D004329 ORTHO05D005516 2.3e-257 892.1 569 78.2
VMungo0251G1423 Vigna mungo HOM05D004329 ORTHO05D005516 3.0e-257 891.7 598 75.4
CsaV3_1G043340 Cucumis sativus L. HOM05D004329 ORTHO05D005516 3.9e-257 891.3 589 77.6
Eucgr.F03808 Eucalyptus grandis HOM05D004329 ORTHO05D005516 6.7e-257 890.6 589 76.2
Phvul.002G282000 Phaseolus vulgaris HOM05D004329 ORTHO05D005516 8.8e-257 890.2 569 77.7
Aqoxy4G00231 Aquilegia oxysepala HOM05D004329 ORTHO05D005516 9.7e-256 886.7 575 77.6
Ca_16811_v3 Cicer arietinum L. HOM05D004329 ORTHO05D005516 1.7e-255 885.9 598 74.9
Thhalv10003854m.g Eutrema salsugineum HOM05D004329 ORTHO05D005516 1.7e-255 885.9 590 74.9
FAN18G1836 Fragaria x ananassa HOM05D004329 ORTHO05D005516 1.7e-255 885.9 579 78.4
MELO3C015126.2 Cucumis melo HOM05D004329 ORTHO05D005516 2.8e-255 885.2 589 76.9
FvH4_5g09400 Fragaria vesca HOM05D004329 ORTHO05D005516 1.1e-254 883.2 579 78.2
Psat7g039240 Pisum sativum HOM05D004329 ORTHO05D005516 1.4e-254 882.9 598 74.2
FAN13G1968 Fragaria x ananassa HOM05D004329 ORTHO05D005516 1.8e-254 882.5 604 76.2
Sed0023904 Sechium edule HOM05D004329 ORTHO05D005516 1.8e-254 882.5 590 78.0
AT5G61970 Arabidopsis thaliana HOM05D004329 ORTHO05D005516 3.1e-254 881.7 593 74.7
Lalb_Chr07g0183781 Lupinus albus HOM05D004329 ORTHO05D005516 3.1e-254 881.7 598 74.1
AL8G38730 Arabidopsis lyrata HOM05D004329 ORTHO05D005516 1.6e-253 879.4 593 74.4
Manes.06G126200 Manihot esculenta HOM05D004329 ORTHO05D005516 2.6e-253 878.6 589 75.7
Sabra15G0125900 Salix brachista HOM05D004329 ORTHO05D005516 1.3e-252 876.3 637 71.3
BolC2t12235H Brassica oleracea HOM05D004329 ORTHO05D005516 2.2e-252 875.5 595 73.8
THA.LOC104819422 Tarenaya hassleriana HOM05D004329 ORTHO05D005516 8.5e-252 873.6 579 75.5
Carub.0008s2266 Capsella rubella HOM05D004329 ORTHO05D005516 4.2e-251 871.3 594 73.2
Aa31LG11G1550 Aethionema arabicum HOM05D004329 ORTHO05D005516 7.2e-251 870.5 589 74.0
Hund02504 Selenicereus undatus HOM05D004329 ORTHO05D005516 7.2e-251 870.5 554 79.6
THA.LOC104823903 Tarenaya hassleriana HOM05D004329 ORTHO05D005516 2.7e-250 868.6 579 75.6
BraA02t09122Z Brassica rapa HOM05D004329 ORTHO05D005516 1.0e-249 866.7 595 73.1
arahy.Tifrunner.gnm1.ann1.IBL9WM Arachis hypogaea HOM05D004329 ORTHO05D005516 1.8e-249 865.9 593 74.5
arahy.Tifrunner.gnm1.ann1.HJ5J7F Arachis hypogaea HOM05D004329 ORTHO05D005516 4.0e-249 864.8 593 74.4
Sp2g25150 Schrenkiella parvula HOM05D004329 ORTHO05D005516 4.0e-249 864.8 589 73.5
Carub.0005s0295 Capsella rubella HOM05D004329 ORTHO05D005516 1.5e-248 862.8 594 72.7
A06p28670 Brassica napus HOM05D004329 ORTHO05D005516 1.4e-246 856.3 589 72.7
BraA06t25807Z Brassica rapa HOM05D004329 ORTHO05D005516 3.1e-246 855.1 589 72.5
BcaB02g09609 Brassica carinata HOM05D004329 ORTHO05D005516 1.6e-245 852.8 589 72.7
BcaC01g02451 Brassica carinata HOM05D004329 ORTHO05D005516 2.0e-245 852.4 589 72.5
C03p65130 Brassica napus HOM05D004329 ORTHO05D005516 2.0e-245 852.4 589 72.5
BolC3t18767H Brassica oleracea HOM05D004329 ORTHO05D005516 2.0e-245 852.4 589 72.5
FAN08G1859 Fragaria x ananassa HOM05D004329 ORTHO05D005516 5.9e-245 850.9 558 78.7
FAN04G0329 Fragaria x ananassa HOM05D004329 ORTHO05D005516 1.0e-244 850.1 579 76.7
Sabra12G0078600 Salix brachista HOM05D004329 ORTHO05D005516 3.8e-244 848.2 659 67.8
Glyma.08G008000 Glycine max HOM05D004329 ORTHO05D005516 6.5e-244 847.4 533 79.2
ATR1096G004 Amborella trichopoda HOM05D004329 ORTHO05D005516 1.2e-242 843.2 590 71.0
SGA_v2.0_scaffold40G15626 Striga asiatica HOM05D004329 ORTHO05D005516 1.0e-241 840.1 607 72.7
BcaB07g29807 Brassica carinata HOM05D004329 ORTHO05D005516 1.8e-241 839.3 617 70.2
Cpa.g.sc13.162 Carica papaya HOM05D004329 ORTHO05D005516 3.4e-240 835.1 585 74.5
PSO478G2811 Papaver somniferum HOM05D004329 ORTHO05D005516 3.4e-240 835.1 595 71.3
PSO017G7154 Papaver somniferum HOM05D004329 ORTHO05D005516 4.4e-240 834.7 595 71.3
SalBow1G7365 Salvia bowleyana HOM05D004329 ORTHO05D005516 2.2e-239 832.4 631 71.0
AUR62009528 Chenopodium quinoa HOM05D004329 ORTHO05D005516 1.2e-234 816.6 563 74.2
AUR62041693 Chenopodium quinoa HOM05D004329 ORTHO05D005516 1.2e-232 810.1 563 73.4
PGSC0003DMG400015501 Solanum tuberosum HOM05D004329 ORTHO05D005516 2.9e-228 795.4 484 82.4
unitig_32.g11043 Utricularia gibba HOM05D004329 ORTHO05D005516 1.4e-225 786.6 649 63.6
MBI13_g15007_MAGBIO Magnolia biondii HOM05D004329 ORTHO05D005516 4.4e-224 781.6 492 78.7
PSO081G0143 Papaver somniferum HOM05D004329 ORTHO05D005516 2.5e-219 765.8 595 67.1
Manes.14G045200 Manihot esculenta HOM05D004329 ORTHO05D005516 2.9e-215 752.3 478 79.7
CARHR275760 Cardamine hirsuta HOM05D004329 ORTHO05D005516 2.0e-208 729.6 478 76.6
CDE04G3457 Ceratophyllum demersum HOM05D004329 ORTHO05D005516 2.0e-208 729.6 595 64.9
SEGI_15405 Sequoiadendron giganteum HOM05D004329 ORTHO05D005516 9.8e-208 727.2 595 61.8
Zm00001eb327290 Zea mays HOM05D004329 ORTHO05D005516 1.9e-206 723.0 591 62.8
Cc09_g07950 Coffea canephora HOM05D004329 ORTHO05D005516 4.9e-199 698.4 430 82.1
AUR62044173 Chenopodium quinoa HOM05D004329 ORTHO05D005516 7.8e-197 691.0 521 69.7
C02p61780 Brassica napus HOM05D004329 ORTHO05D005516 4.3e-187 658.7 426 76.8
MBI13_g43178_MAGBIO Magnolia biondii HOM05D004329 ORTHO05D005516 9.6e-187 657.5 492 68.9
AagrBONN_evm.TU.Sc2ySwM_228.1186 Anthoceros agrestis HOM05D004329 ORTHO05D005516 1.1e-169 600.9 574 53.8
Pp3c15_22190 Physcomitrium patens HOM05D004329 ORTHO05D005516 1.0e-164 584.3 564 51.6
Mapoly0153s0017 Marchantia polymorpha HOM05D004329 ORTHO05D005516 9.0e-161 571.2 569 50.6
Os08g0323000 Oryza sativa ssp. japonica HOM05D004329 ORTHO05D005516 4.5e-152 542.3 432 63.4
Ah.11g046840 Amaranthus hybridus HOM05D004329 ORTHO05D005516 4.6e-149 532.3 305 86.2
A02p41850 Brassica napus HOM05D004329 ORTHO05D005516 8.5e-143 511.5 362 71.8
HPP92_028710 Vanilla planifolia HOM05D004329 ORTHO05D005516 9.4e-142 508.1 418 62.4
CBR_g20988 Chara braunii HOM05D004329 ORTHO05D005516 4.7e-141 505.8 603 46.3
Nitab4.5_0017885g0010 Nicotiana tabacum HOM05D004329 ORTHO05D005516 3.6e-133 479.6 322 76.7
Nitab4.5_0009429g0030 Nicotiana tabacum HOM05D004329 ORTHO05D005516 1.8e-129 467.2 285 82.8
SMO356G0738 Selaginella moellendorffii HOM05D004329 ORTHO05D005516 9.1e-129 464.9 567 44.8
Cc00_g30130 Coffea canephora HOM05D004329 ORTHO05D005516 2.2e-127 460.3 280 84.3
FAN18G2676 Fragaria x ananassa HOM05D004329 ORTHO05D005516 9.4e-126 454.9 517 52.8
Aqoxy5G01090 Aquilegia oxysepala HOM05D004329 ORTHO05D005516 1.5e-107 394.4 440 51.8
CDE07G0688 Ceratophyllum demersum HOM05D004329 ORTHO05D005516 2.2e-106 390.6 247 78.9
CDE07G1247 Ceratophyllum demersum HOM05D004329 ORTHO05D005516 7.8e-96 355.5 273 68.1
TAR622G0210 Trochodendron aralioides HOM05D004329 ORTHO05D005516 3.3e-94 350.1 306 61.1
Cre06.g267100 Chlamydomonas reinhardtii HOM05D004329 ORTHO05D005516 4.6e-72 276.6 679 31.7
MCO15G338 Micromonas commoda HOM05D004329 ORTHO05D005516 2.5e-70 270.8 572 32.2
MBI13_g13130_MAGBIO Magnolia biondii HOM05D004329 ORTHO05D005516 4.6e-64 250.0 180 72.8
Cc09_g07980 Coffea canephora HOM05D004329 ORTHO05D005516 7.1e-57 226.1 125 88.0
Cc09_g07990 Coffea canephora HOM05D004329 ORTHO05D005516 7.1e-57 226.1 125 88.0
BcaC03g18112 Brassica carinata HOM05D004329 ORTHO05D005516 6.7e-55 219.5 154 71.4
CSS0034501 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 8.7e-47 192.6 102 92.2
CSS0009974 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 4.3e-46 190.3 107 87.9
PRCOL_00003443 Prasinoderma coloniale HOM05D004329 ORTHO05D005516 2.1e-40 171.4 625 26.6
Solyc02g062830.2 Solanum lycopersicum HOM05D004329 ORTHO05D005516 3.8e-34 150.6 96 77.1
AagrBONN_evm.TU.Sc2ySwM_228.1280 Anthoceros agrestis HOM05D004329 ORTHO05D005516 1.0e-31 142.5 186 43.0
AagrBONN_evm.TU.Sc2ySwM_228.1281 Anthoceros agrestis HOM05D004329 ORTHO05D005516 8.8e-31 139.4 120 55.8
CARHR275770 Cardamine hirsuta HOM05D004329 ORTHO05D005516 6.5e-26 123.2 93 64.5
C02p61790 Brassica napus HOM05D004329 ORTHO05D005516 5.5e-25 120.2 93 63.4
Solyc02g062840.1 Solanum lycopersicum HOM05D004329 ORTHO05D005516 6.7e-23 113.2 66 81.8
Zm00001eb081410 Zea mays HOM05D004902 ORTHO05D006603 2.9e-18 97.8 78 59.0
Lsat_1_v5_gn_2_122301 Lactuca sativa HOM05D009063 ORTHO05D011082 3.8e-18 97.4 201 35.8
Cfa027290 Carpinus fangiana HOM05D004329 ORTHO05D121551 2.5e-17 94.7 634 23.3
CSS0048280 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 1.2e-16 92.4 94 58.5
Haze_22596 Corylus avellana HOM05D004329 ORTHO05D010424 3.6e-16 90.9 61 67.2
Lsat_1_v5_gn_5_81961 Lactuca sativa HOM05D004329 ORTHO05D005516 1.8e-15 88.6 49 85.7
Lsat_1_v5_gn_8_114301 Lactuca sativa HOM05D004329 ORTHO05D005516 8.8e-15 86.3 48 85.4
Zm00001eb202340 Zea mays HOM05D004329 ORTHO05D005516 6.3e-13 80.1 71 52.1
CAN.G865.5 Capsicum annuum HOM05D004329 ORTHO05D005516 4.1e-12 77.4 57 56.1
Sopen02g013860 Solanum pennellii HOM05D004329 ORTHO05D026010 4.4e-06 57.4 59 54.2


User provided reference genes

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