Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5A830G8 Lonicera japonica HOM05D029725 ORTHO05D003000 5.3e-110 401.0 193 100.0
Lj5A829G20 Lonicera japonica HOM05D029725 ORTHO05D003000 7.9e-66 254.2 189 67.2
Lj5A831G12 Lonicera japonica HOM05D029725 ORTHO05D234351 2.7e-45 186.0 149 64.4
Lj5A834T31 Lonicera japonica HOM05D029725 ORTHO05D003000 2.0e-16 90.1 125 40.8
ECA233G2635 Erigeron canadensis HOM05D000058 ORTHO05D000077 2.4e-14 83.2 167 33.5
Nn3g18649 Nelumbo nucifera HOM05D002658 ORTHO05D003000 9.2e-14 81.3 185 35.1
vmacro10896 Vaccinium macrocarpon HOM05D002658 ORTHO05D003000 9.2e-14 81.3 148 37.2
RcHm_v2.0_Chr4g0446621 Rosa chinensis HOM05D002658 ORTHO05D003000 4.6e-13 79.0 186 33.3
CARHR093990 Cardamine hirsuta HOM05D002658 ORTHO05D003000 1.7e-12 77.0 144 37.5
CSS0029052 Camellia sinensis var. sinensis HOM05D002658 ORTHO05D003000 2.3e-12 76.6 183 32.2
Nitab4.5_0002873g0020 Nicotiana tabacum HOM05D002658 ORTHO05D003000 3.0e-12 76.3 146 39.7
Prupe.1G346800 Prunus persica HOM05D002658 ORTHO05D003000 3.0e-12 76.3 156 34.6
ATR1098G121 Amborella trichopoda HOM05D002658 ORTHO05D003000 3.9e-12 75.9 172 33.1
Sed0005223 Sechium edule HOM05D002658 ORTHO05D003000 3.9e-12 75.9 186 32.8
Atru.chr11.1170 Acer truncatum HOM05D002658 ORTHO05D003000 5.1e-12 75.5 145 34.5
Manes.04G057000 Manihot esculenta HOM05D002658 ORTHO05D003000 5.1e-12 75.5 151 35.8
SalBow2G3648 Salvia bowleyana HOM05D002658 ORTHO05D003000 5.1e-12 75.5 149 36.9
FAN07G0595 Fragaria x ananassa HOM05D002658 ORTHO05D003000 6.6e-12 75.1 172 32.0
Sabra05G0077200 Salix brachista HOM05D002658 ORTHO05D003000 6.6e-12 75.1 191 31.9
TAR629G2145 Trochodendron aralioides HOM05D002658 ORTHO05D003000 8.6e-12 74.7 185 33.5
TAR629G3397 Trochodendron aralioides HOM05D002658 ORTHO05D003000 8.6e-12 74.7 185 33.5
FAN17G0854 Fragaria x ananassa HOM05D002658 ORTHO05D003000 1.1e-11 74.3 186 29.6
Manes.04G053300 Manihot esculenta HOM05D002658 ORTHO05D003000 1.5e-11 73.9 189 32.3
Nitab4.5_0000739g0010 Nicotiana tabacum HOM05D002658 ORTHO05D003000 1.5e-11 73.9 145 39.3
Sc06g0007980 Simmondsia chinensis HOM05D002658 ORTHO05D003000 1.5e-11 73.9 191 32.5
HanXRQChr06g0171481 Helianthus annuus HOM05D002658 ORTHO05D003000 2.5e-11 73.2 145 33.8
FAN12G1156 Fragaria x ananassa HOM05D002658 ORTHO05D003000 4.3e-11 72.4 194 31.4
Actinidia04307 Actinidia chinensis HOM05D002658 ORTHO05D003000 5.6e-11 72.0 183 31.1
AT3G18610 Arabidopsis thaliana HOM05D002658 ORTHO05D003000 5.6e-11 72.0 192 29.2
ECA246G1081 Erigeron canadensis HOM05D002658 ORTHO05D003000 5.6e-11 72.0 191 29.8
MBI02_g07021_MAGBIO Magnolia biondii HOM05D002658 ORTHO05D003000 5.6e-11 72.0 149 34.9
AL3G31920 Arabidopsis lyrata HOM05D002658 ORTHO05D003000 7.3e-11 71.6 191 29.8
ClCG10G011940 Citrullus lanatus HOM05D002658 ORTHO05D003000 7.3e-11 71.6 186 31.2
BcaC08g43092 Brassica carinata HOM05D002658 ORTHO05D003000 9.5e-11 71.2 196 29.6
C06p03520 Brassica napus HOM05D002658 ORTHO05D003000 9.5e-11 71.2 196 29.6
PSO063G2038 Papaver somniferum HOM05D002658 ORTHO05D003000 9.5e-11 71.2 155 31.6
AT1G48920 Arabidopsis thaliana HOM05D002658 ORTHO05D003000 1.2e-10 70.9 191 31.4
CDE01G0413 Ceratophyllum demersum HOM05D002658 ORTHO05D003000 1.2e-10 70.9 144 33.3
CDE12G0003 Ceratophyllum demersum HOM05D002658 ORTHO05D003000 1.2e-10 70.9 144 34.0
Dinv17606 Davidia involucrata HOM05D002658 ORTHO05D003000 1.2e-10 70.9 148 35.8
FvH4_4g36861 Fragaria vesca HOM05D002658 ORTHO05D003000 1.2e-10 70.9 189 31.2
Rhsim09G0074900 Rhododendron simsii HOM05D002658 ORTHO05D003000 1.2e-10 70.9 190 30.0
CDE05G1740 Ceratophyllum demersum HOM05D002658 ORTHO05D003000 1.6e-10 70.5 189 30.2
MELO3C024024.2 Cucumis melo HOM05D002658 ORTHO05D003000 2.1e-10 70.1 164 32.3
DCAR_023453 Daucus carota HOM05D002658 ORTHO05D003000 2.1e-10 70.1 146 33.6
Solyc02g014310.4 Solanum lycopersicum HOM05D002658 ORTHO05D003000 2.1e-10 70.1 144 38.2
Sopen02g003410 Solanum pennellii HOM05D002658 ORTHO05D003000 2.1e-10 70.1 144 38.2
PGSC0003DMG400001191 Solanum tuberosum HOM05D002658 ORTHO05D003000 2.1e-10 70.1 146 38.4
HPP92_026555 Vanilla planifolia HOM05D002658 ORTHO05D003000 2.1e-10 70.1 162 32.1
GSVIVG01012042001 Vitis vinifera HOM05D002658 ORTHO05D003000 2.1e-10 70.1 145 33.8
CANSAT56G3384 Cannabis sativa HOM05D002658 ORTHO05D003000 2.8e-10 69.7 148 32.4
Carub.0001s3809 Capsella rubella HOM05D002658 ORTHO05D003000 2.8e-10 69.7 145 30.3
Potri.005G093100 Populus trichocarpa HOM05D002658 ORTHO05D003000 2.8e-10 69.7 192 30.7
BolC6t35492H Brassica oleracea HOM05D002658 ORTHO05D003000 3.6e-10 69.3 196 29.1
Os04g0620700 Oryza sativa ssp. japonica HOM05D002658 ORTHO05D003000 3.6e-10 69.3 170 31.2
Hund08548 Selenicereus undatus HOM05D000185 ORTHO05D000105 3.6e-10 69.3 155 34.2
Ciclev10030875m.g Citrus clementina HOM05D002658 ORTHO05D003000 4.7e-10 68.9 150 31.3
BcaC05g28595 Brassica carinata HOM05D002658 ORTHO05D003000 6.2e-10 68.6 132 34.1
C05p46990 Brassica napus HOM05D002658 ORTHO05D003000 6.2e-10 68.6 132 34.1
BolC5t33428H Brassica oleracea HOM05D002658 ORTHO05D003000 6.2e-10 68.6 132 34.1
Ca_19028_v3 Cicer arietinum L. HOM05D002658 ORTHO05D003000 6.2e-10 68.6 139 31.7
DCAR_002571 Daucus carota HOM05D002658 ORTHO05D003000 6.2e-10 68.6 186 30.6
Sabra07G0059800 Salix brachista HOM05D002658 ORTHO05D003000 6.2e-10 68.6 145 33.8
Ah.01g012180 Amaranthus hybridus HOM05D002658 ORTHO05D003000 8.1e-10 68.2 152 34.2
A05p31000 Brassica napus HOM05D002658 ORTHO05D003000 8.1e-10 68.2 132 34.8
BraA05t21942Z Brassica rapa HOM05D002658 ORTHO05D003000 8.1e-10 68.2 132 34.8
Lj6C719G16 Lonicera japonica HOM05D002658 ORTHO05D003000 8.1e-10 68.2 150 33.3
PSO782G1034 Papaver somniferum HOM05D002658 ORTHO05D003000 8.1e-10 68.2 155 31.0
Psat7g173280 Pisum sativum HOM05D002658 ORTHO05D003000 8.1e-10 68.2 186 30.6
SGA_v2.0_scaffold99G29460 Striga asiatica HOM05D002658 ORTHO05D003000 8.1e-10 68.2 147 36.1
HPP92_026528 Vanilla planifolia HOM05D002658 ORTHO05D003000 8.1e-10 68.2 162 31.5
Potri.007G071100 Populus trichocarpa HOM05D002658 ORTHO05D003000 1.1e-09 67.8 148 32.4
BcaC05g28592 Brassica carinata HOM05D002658 ORTHO05D003000 1.4e-09 67.4 132 34.8
CsaV3_3G031420 Cucumis sativus L. HOM05D002658 ORTHO05D003000 1.4e-09 67.4 160 30.6
Eucgr.G02571 Eucalyptus grandis HOM05D002658 ORTHO05D003000 1.4e-09 67.4 147 29.9
Hma1.2p1_1683F.1_g297380 Hydrangea macrophylla HOM05D002658 ORTHO05D003000 1.4e-09 67.4 186 31.7
BraA08t32458Z Brassica rapa HOM05D002658 ORTHO05D003000 1.8e-09 67.0 143 31.5
Os08g0192900 Oryza sativa ssp. japonica HOM05D002658 ORTHO05D003000 1.8e-09 67.0 171 32.2
Sed0002082 Sechium edule HOM05D002658 ORTHO05D003000 1.8e-09 67.0 149 32.9
CiPaw.06G060000 Carya illinoinensis HOM05D002658 ORTHO05D003000 2.3e-09 66.6 184 30.4
Thhalv10011361m.g Eutrema salsugineum HOM05D002658 ORTHO05D003000 2.3e-09 66.6 147 32.7
A05p20830 Brassica napus HOM05D002658 ORTHO05D003000 3.1e-09 66.2 190 29.5
C08p04580 Brassica napus HOM05D002658 ORTHO05D003000 3.1e-09 66.2 143 31.5
BraA05t20989Z Brassica rapa HOM05D002658 ORTHO05D003000 3.1e-09 66.2 190 29.5
Duzib248G1296 Durio zibethinus HOM05D002658 ORTHO05D003000 3.1e-09 66.2 146 32.9
Lj3C850T20 Lonicera japonica HOM05D002658 ORTHO05D003000 3.1e-09 66.2 146 34.9
MBI18_g11231_MAGBIO Magnolia biondii HOM05D002658 ORTHO05D003000 3.1e-09 66.2 211 28.9
MSTRG.8085 Avicennia marina HOM05D002658 ORTHO05D003000 4.0e-09 65.9 153 33.3
Gohir.D12G137566 Gossypium hirsutum HOM05D002658 ORTHO05D003000 4.0e-09 65.9 121 34.7
TWI53G1249 Tripterygium wilfordii HOM05D002658 ORTHO05D003000 4.0e-09 65.9 192 28.1
AL1G55750 Arabidopsis lyrata HOM05D002658 ORTHO05D003000 5.2e-09 65.5 196 30.1
BcaB07g33701 Brassica carinata HOM05D002658 ORTHO05D003000 5.2e-09 65.5 150 31.3
Sp1g35830 Schrenkiella parvula HOM05D002658 ORTHO05D003000 5.2e-09 65.5 190 30.5
BcaC05g27545 Brassica carinata HOM05D002658 ORTHO05D003000 6.8e-09 65.1 190 30.0
C05p35300 Brassica napus HOM05D002658 ORTHO05D003000 6.8e-09 65.1 190 30.0
BolC5t32244H Brassica oleracea HOM05D002658 ORTHO05D003000 6.8e-09 65.1 190 30.0
CDE02G0625 Ceratophyllum demersum HOM05D002658 ORTHO05D003000 6.8e-09 65.1 157 28.7
Gohir.A01G012800 Gossypium hirsutum HOM05D002658 ORTHO05D003000 6.8e-09 65.1 186 30.1
Gorai.002G015800 Gossypium raimondii HOM05D002658 ORTHO05D003000 6.8e-09 65.1 186 30.1
Gorai.008G149100 Gossypium raimondii HOM05D002658 ORTHO05D003000 6.8e-09 65.1 121 34.7
Thecc.02G160500 Theobroma cacao HOM05D002658 ORTHO05D003000 6.8e-09 65.1 147 32.7
BcaB04g17378 Brassica carinata HOM05D002658 ORTHO05D003000 8.9e-09 64.7 145 30.3
Gohir.D13G061900 Gossypium hirsutum HOM05D002658 ORTHO05D003000 1.2e-08 64.3 148 32.4
THA.LOC104810678 Tarenaya hassleriana HOM05D002658 ORTHO05D003000 1.2e-08 64.3 191 30.4
THA.LOC104820414 Tarenaya hassleriana HOM05D002658 ORTHO05D003000 1.2e-08 64.3 146 32.9
TPR.G32352 Trifolium pratense HOM05D002658 ORTHO05D003000 1.2e-08 64.3 143 32.2
A06p04110 Brassica napus HOM05D002658 ORTHO05D003000 1.5e-08 63.9 186 28.0
A06p04130 Brassica napus HOM05D000335 ORTHO05D003000 1.5e-08 63.9 186 28.0
BraA06t23617Z Brassica rapa HOM05D002658 ORTHO05D003000 1.5e-08 63.9 186 28.0
FvH4_5g39267 Fragaria vesca HOM05D002658 ORTHO05D003000 1.5e-08 63.9 176 30.7
Gohir.D01G014000 Gossypium hirsutum HOM05D002658 ORTHO05D003000 1.5e-08 63.9 186 30.1
Zm00001eb046260 Zea mays HOM05D002658 ORTHO05D003000 1.5e-08 63.9 187 27.8
BcaB02g11292 Brassica carinata HOM05D002658 ORTHO05D003000 2.0e-08 63.5 145 31.7
DCAR_002573 Daucus carota HOM05D002658 ORTHO05D003000 2.0e-08 63.5 183 29.5
Migut.E00700 Erythranthe guttata HOM05D002658 ORTHO05D003000 2.0e-08 63.5 185 29.7
Lsat_1_v5_gn_3_35601 Lactuca sativa HOM05D002658 ORTHO05D003000 2.0e-08 63.5 146 33.6
MD16G1001600 Malus domestica HOM05D002658 ORTHO05D003000 2.0e-08 63.5 123 33.3
Aa31LG10G5000 Aethionema arabicum HOM05D002658 ORTHO05D003000 2.6e-08 63.2 195 28.2
HanXRQChr17g0544851 Helianthus annuus HOM05D002658 ORTHO05D003000 2.6e-08 63.2 117 31.6
Lalb_Chr19g0139381 Lupinus albus HOM05D002658 ORTHO05D003000 2.6e-08 63.2 193 28.0
SHI31085 Sapria himalayana HOM05D002658 ORTHO05D003000 2.6e-08 63.2 175 28.6
Duzib052G0136 Durio zibethinus HOM05D002658 ORTHO05D003000 3.4e-08 62.8 147 31.3
Peaxi162Scf01412g00004 Petunia axillaris HOM05D002658 ORTHO05D003000 3.4e-08 62.8 121 34.7
Gorai.013G070400 Gossypium raimondii HOM05D002658 ORTHO05D003000 4.4e-08 62.4 148 31.8
BraA05t21943Z Brassica rapa HOM05D002658 ORTHO05D003000 5.8e-08 62.0 148 33.1
Duzib132G0973 Durio zibethinus HOM05D002658 ORTHO05D003000 5.8e-08 62.0 147 31.3
Aqoxy3G04264 Aquilegia oxysepala HOM05D002658 ORTHO05D003000 7.6e-08 61.6 148 32.4
EL10Ac9g22941 Beta vulgaris HOM05D002658 ORTHO05D003000 7.6e-08 61.6 145 32.4
ECA234G2787 Erigeron canadensis HOM05D002658 ORTHO05D003000 7.6e-08 61.6 168 27.4
FAN08G3096 Fragaria x ananassa HOM05D002658 ORTHO05D003000 7.6e-08 61.6 174 29.3
A05p31010 Brassica napus HOM05D002658 ORTHO05D003000 9.9e-08 61.2 148 32.4
CARHR038910 Cardamine hirsuta HOM05D002658 ORTHO05D003000 9.9e-08 61.2 149 32.9
Thhalv10020940m.g Eutrema salsugineum HOM05D002658 ORTHO05D003000 9.9e-08 61.2 189 30.2
HanXRQChr01g0028031 Helianthus annuus HOM05D002658 ORTHO05D003000 9.9e-08 61.2 144 31.9
PGR142G2595 Punica granatum HOM05D002658 ORTHO05D003000 9.9e-08 61.2 149 28.2
QL03p044151 Quercus lobata HOM05D002658 ORTHO05D003000 1.3e-07 60.8 146 32.2
Haze_11751 Corylus avellana HOM05D002658 ORTHO05D003000 2.2e-07 60.1 144 32.6
MD13G1006400 Malus domestica HOM05D002658 ORTHO05D003000 2.2e-07 60.1 123 34.1
Medtr4g074930 Medicago truncatula HOM05D002658 ORTHO05D003000 2.2e-07 60.1 172 30.8
Phvul.011G030600 Phaseolus vulgaris HOM05D002658 ORTHO05D003000 2.2e-07 60.1 150 30.0
CANSAT56G2059 Cannabis sativa HOM05D000604 ORTHO05D004856 2.9e-07 59.7 119 29.4
Lj3g0010214 Lotus japonicus HOM05D002658 ORTHO05D003000 2.9e-07 59.7 156 30.1
CANSAT35G1381 Cannabis sativa HOM05D000604 ORTHO05D004856 3.7e-07 59.3 119 30.3
Glyma.11G101500 Glycine max HOM05D002658 ORTHO05D003000 3.7e-07 59.3 189 28.6
Cre06.g275100 Chlamydomonas reinhardtii HOM05D002658 ORTHO05D003000 4.9e-07 58.9 136 28.7
Lsat_1_v5_gn_4_65420 Lactuca sativa HOM05D002658 ORTHO05D003000 6.4e-07 58.5 144 27.1
SalBow6G5085 Salvia bowleyana HOM05D002658 ORTHO05D003000 8.4e-07 58.2 146 32.2
Glyma.12G027400 Glycine max HOM05D002658 ORTHO05D003000 1.1e-06 57.8 147 31.3
Peaxi162Scf00363g00520 Petunia axillaris HOM05D002658 ORTHO05D003000 1.1e-06 57.8 121 33.1
SEGI_11850 Sequoiadendron giganteum HOM05D002658 ORTHO05D003000 1.1e-06 57.8 131 31.3
BolC8t47262H Brassica oleracea HOM05D002658 ORTHO05D003000 1.4e-06 57.4 137 29.9
TWI74G1649 Tripterygium wilfordii HOM05D002658 ORTHO05D003000 1.4e-06 57.4 153 29.4
A08p04310 Brassica napus HOM05D002658 ORTHO05D003000 1.9e-06 57.0 156 28.2
Oeu027908.2 Olea europaea HOM05D002658 ORTHO05D003000 1.9e-06 57.0 141 34.8
Pp3c1_36300 Physcomitrium patens HOM05D002658 ORTHO05D003000 1.9e-06 57.0 127 29.9
AagrBONN_evm.TU.Sc2ySwM_368.1668 Anthoceros agrestis HOM05D002658 ORTHO05D003000 2.4e-06 56.6 132 28.8
Cpa.g.sc183.5 Carica papaya HOM05D002658 ORTHO05D003000 2.4e-06 56.6 121 33.1
BolC5t33429H Brassica oleracea HOM05D002658 ORTHO05D003000 3.2e-06 56.2 149 32.9
PSO063G6725 Papaver somniferum HOM05D002658 ORTHO05D003000 3.2e-06 56.2 107 31.8
HPP92_014004 Vanilla planifolia HOM05D002658 ORTHO05D003000 3.2e-06 56.2 203 26.6
Mapoly0084s0037 Marchantia polymorpha HOM05D003897 ORTHO05D005095 4.1e-06 55.8 111 31.5
SGA_v2.0_scaffold88G27231 Striga asiatica HOM05D002658 ORTHO05D003000 4.1e-06 55.8 185 26.5
SMO228G0128 Selaginella moellendorffii HOM05D002658 ORTHO05D003000 5.4e-06 55.5 128 29.7
SEGI_27819 Sequoiadendron giganteum HOM05D002658 ORTHO05D003000 5.4e-06 55.5 107 29.9
Gohir.A13G060000 Gossypium hirsutum HOM05D002658 ORTHO05D003000 7.1e-06 55.1 135 28.9
Lalb_Chr01g0001461 Lupinus albus HOM05D002658 ORTHO05D003000 7.1e-06 55.1 152 29.6
Lalb_Chr03g0024791 Lupinus albus HOM05D002658 ORTHO05D003000 7.1e-06 55.1 144 27.8
BcaC05g28596 Brassica carinata HOM05D002658 ORTHO05D003000 9.2e-06 54.7 149 32.9


User provided reference genes

Program Settings